RNA–Protein interactions for RNA: ENST00000535927.5

VAMP1-205, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 578 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-205ENST00000535927 NISCHQ9Y2I1 1504 aa38.17■■■■□ 3.7
VAMP1-205ENST00000535927 CCDC180Q9P1Z9 1646 aa33.72■■■□□ 2.99
VAMP1-205ENST00000535927 ABCC9O60706 1549 aa32.5■■■□□ 2.79
VAMP1-205ENST00000535927 ZCCHC6Q5VYS8 1495 aaKnown RBP31.9■■■□□ 2.7
VAMP1-205ENST00000535927 DCAF1Q9Y4B6 1507 aa31.74■■■□□ 2.67
VAMP1-205ENST00000535927 MYO15BQ96JP2 1530 aa31.7■■■□□ 2.66
VAMP1-205ENST00000535927 NACADO15069 1562 aa31.59■■■□□ 2.65
VAMP1-205ENST00000535927 DCAF8L2P0C7V8 631 aa31.53■■■□□ 2.64
VAMP1-205ENST00000535927 RB1CC1Q8TDY2 1594 aa31.43■■■□□ 2.62
VAMP1-205ENST00000535927 DNAJC5BQ9UF47 199 aa30.82■■■□□ 2.52
VAMP1-205ENST00000535927 SCRIBQ14160 1630 aa30.61■■■□□ 2.49
VAMP1-205ENST00000535927 UNC13AQ9UPW8 1703 aa30.59■■■□□ 2.49
VAMP1-205ENST00000535927 BICRAQ9NZM4 1560 aa30.33■■■□□ 2.45
VAMP1-205ENST00000535927 SHROOM4Q9ULL8 1493 aa30.33■■■□□ 2.45
VAMP1-205ENST00000535927 PABPN1Q86U42 306 aaKnown RBP eCLIP30.19■■■□□ 2.42
VAMP1-205ENST00000535927 BAZ1AQ9NRL2 1556 aaPredicted RBP29.57■■■□□ 2.32
VAMP1-205ENST00000535927 CECR2Q9BXF3 1484 aa29.54■■■□□ 2.32
VAMP1-205ENST00000535927 EIF4G1Q04637 1599 aaKnown RBP29.52■■■□□ 2.32
VAMP1-205ENST00000535927 SMARCA4P51532 1647 aa29.44■■■□□ 2.3
VAMP1-205ENST00000535927 CC2D2AQ9P2K1 1620 aa29.34■■■□□ 2.29
VAMP1-205ENST00000535927 MROH2BQ7Z745 1585 aa29.32■■■□□ 2.28
VAMP1-205ENST00000535927 RSF1Q96T23 1441 aaPredicted RBP29.28■■■□□ 2.28
VAMP1-205ENST00000535927 PEG3Q9GZU2 1588 aa29.25■■■□□ 2.27
VAMP1-205ENST00000535927 SMARCA2P51531 1590 aa29.23■■■□□ 2.27
VAMP1-205ENST00000535927 ATAD2BQ9ULI0 1458 aa29.16■■■□□ 2.26
VAMP1-205ENST00000535927 NCAPD3P42695 1498 aa29.13■■■□□ 2.25
VAMP1-205ENST00000535927 WIZO95785 1651 aa29.02■■■□□ 2.24
VAMP1-205ENST00000535927 HMGXB3Q12766 1538 aa29.02■■■□□ 2.24
VAMP1-205ENST00000535927 BAZ1BQ9UIG0 1483 aaKnown RBP28.95■■■□□ 2.22
VAMP1-205ENST00000535927 SUPT5HO00267 1087 aaKnown RBP28.91■■■□□ 2.22
VAMP1-205ENST00000535927 TOP2AP11388 1531 aaKnown RBP28.85■■■□□ 2.21
VAMP1-205ENST00000535927 DNAJC5Q9H3Z4 198 aa28.69■■■□□ 2.18
VAMP1-205ENST00000535927 CCDC88BA6NC98 1476 aa28.48■■■□□ 2.15
VAMP1-205ENST00000535927 CADPSQ9ULU8 1353 aa28.29■■■□□ 2.12
VAMP1-205ENST00000535927 LAMC3Q9Y6N6 1575 aa28.24■■■□□ 2.11
VAMP1-205ENST00000535927 CFTRP13569 1480 aa28.24■■■□□ 2.11
VAMP1-205ENST00000535927 CUX2O14529 1486 aa28.21■■■□□ 2.11
VAMP1-205ENST00000535927 ERCC6Q03468 1493 aa28.15■■■□□ 2.1
VAMP1-205ENST00000535927 PRDM2Q13029 1718 aa28.07■■■□□ 2.08
VAMP1-205ENST00000535927 PDS5BQ9NTI5 1447 aa28.07■■■□□ 2.08
VAMP1-205ENST00000535927 NESP48681 1621 aa28.02■■■□□ 2.08
VAMP1-205ENST00000535927 FANCD2Q9BXW9 1451 aa27.89■■■□□ 2.06
VAMP1-205ENST00000535927 CEP164Q9UPV0 1460 aa27.82■■■□□ 2.04
VAMP1-205ENST00000535927 KIF21AQ7Z4S6 1674 aa27.75■■■□□ 2.03
VAMP1-205ENST00000535927 ABCC8Q09428 1581 aa27.74■■■□□ 2.03
VAMP1-205ENST00000535927 MRC2Q9UBG0 1479 aa27.65■■■□□ 2.02
VAMP1-205ENST00000535927 WRNQ14191 1432 aaPredicted RBP eCLIP27.61■■■□□ 2.01
VAMP1-205ENST00000535927 THOC2Q8NI27 1593 aaKnown RBP27.57■■■□□ 2
VAMP1-205ENST00000535927 DNMBPQ6XZF7 1577 aa27.56■■■□□ 2
VAMP1-205ENST00000535927 WDR62O43379 1518 aa27.54■■■□□ 2
VAMP1-205ENST00000535927 URB2Q14146 1524 aaKnown RBP27.52■■■□□ 2
VAMP1-205ENST00000535927 TOPBP1Q92547 1522 aa27.51■■■□□ 2
VAMP1-205ENST00000535927 TOP2BQ02880 1626 aa27.49■■□□□ 1.99
VAMP1-205ENST00000535927 CUX1P39880 1505 aa27.48■■□□□ 1.99
VAMP1-205ENST00000535927 BIVM-ERCC5R4GMW8 1640 aa27.47■■□□□ 1.99
VAMP1-205ENST00000535927 CHIC1Q5VXU3 224 aa27.42■■□□□ 1.98
VAMP1-205ENST00000535927 TRIM41Q8WV44 630 aa27.41■■□□□ 1.98
VAMP1-205ENST00000535927 SYNJ1O43426 1573 aa27.39■■□□□ 1.98
VAMP1-205ENST00000535927 FGD5Q6ZNL6 1462 aa27.32■■□□□ 1.96
VAMP1-205ENST00000535927 POLA1P09884 1462 aaPredicted RBP27.31■■□□□ 1.96
VAMP1-205ENST00000535927 IFT140Q96RY7 1462 aa27.26■■□□□ 1.95
VAMP1-205ENST00000535927 SOGA1O94964 1423 aa27.26■■□□□ 1.95
VAMP1-205ENST00000535927 ABCA10Q8WWZ4 1543 aa27.17■■□□□ 1.94
VAMP1-205ENST00000535927 WDR97A6NE52 1622 aa27.16■■□□□ 1.94
VAMP1-205ENST00000535927 TARBP1Q13395 1621 aaKnown RBP27.16■■□□□ 1.94
VAMP1-205ENST00000535927 RAD54L2Q9Y4B4 1467 aa27.11■■□□□ 1.93
VAMP1-205ENST00000535927 KIF27Q86VH2 1401 aa27.05■■□□□ 1.92
VAMP1-205ENST00000535927 EEA1Q15075 1411 aa27.03■■□□□ 1.92
VAMP1-205ENST00000535927 TDRD9Q8NDG6 1382 aaKnown RBP26.95■■□□□ 1.9
VAMP1-205ENST00000535927 GAPVD1Q14C86 1478 aa26.94■■□□□ 1.9
VAMP1-205ENST00000535927 ABCA5Q8WWZ7 1642 aa26.94■■□□□ 1.9
VAMP1-205ENST00000535927 ZNF608Q9ULD9 1512 aaPredicted RBP26.92■■□□□ 1.9
VAMP1-205ENST00000535927 AQRO60306 1485 aaKnown RBP eCLIP26.89■■□□□ 1.9
VAMP1-205ENST00000535927 OSCARQ8IYS5 282 aa26.89■■□□□ 1.9
VAMP1-205ENST00000535927 GRIN2BQ13224 1484 aa26.88■■□□□ 1.89
VAMP1-205ENST00000535927 ERICH3Q5RHP9 1530 aa26.88■■□□□ 1.89
VAMP1-205ENST00000535927 EIF4G3O43432 1585 aaKnown RBP26.88■■□□□ 1.89
VAMP1-205ENST00000535927 IGF1RP08069 1367 aa26.83■■□□□ 1.88
VAMP1-205ENST00000535927 CSRNP3Q8WYN3 585 aa26.81■■□□□ 1.88
VAMP1-205ENST00000535927 PBRM1Q86U86 1689 aa26.79■■□□□ 1.88
VAMP1-205ENST00000535927 MAGI1Q96QZ7 1491 aaPredicted RBP26.78■■□□□ 1.88
VAMP1-205ENST00000535927 RUSC2Q8N2Y8 1516 aa26.78■■□□□ 1.88
VAMP1-205ENST00000535927 CUL7Q14999 1698 aa26.74■■□□□ 1.87
VAMP1-205ENST00000535927 FHAD1B1AJZ9 1412 aa26.7■■□□□ 1.86
VAMP1-205ENST00000535927 CARMIL1Q5VZK9 1371 aa26.69■■□□□ 1.86
VAMP1-205ENST00000535927 SNAPC4Q5SXM2 1469 aa26.66■■□□□ 1.86
VAMP1-205ENST00000535927 PRXQ9BXM0 1461 aa26.64■■□□□ 1.86
VAMP1-205ENST00000535927 SYNJ2O15056 1496 aa26.63■■□□□ 1.85
VAMP1-205ENST00000535927 FAM9AQ8IZU1 332 aaPredicted RBP26.63■■□□□ 1.85
VAMP1-205ENST00000535927 ADAMTS12P58397 1594 aa26.62■■□□□ 1.85
VAMP1-205ENST00000535927 RAPGEF2Q9Y4G8 1499 aa26.6■■□□□ 1.85
VAMP1-205ENST00000535927 CHMP7Q8WUX9 453 aaPredicted RBP26.58■■□□□ 1.85
VAMP1-205ENST00000535927 KIF21BO75037 1637 aa26.57■■□□□ 1.84
VAMP1-205ENST00000535927 RIMBP3CA6NJZ7 1639 aa26.54■■□□□ 1.84
VAMP1-205ENST00000535927 RIMBP3BA6NNM3 1639 aa26.54■■□□□ 1.84
VAMP1-205ENST00000535927 RIMBP3Q9UFD9 1639 aa26.54■■□□□ 1.84
VAMP1-205ENST00000535927 GRIN2AQ12879 1464 aa26.49■■□□□ 1.83
VAMP1-205ENST00000535927 FBLN2P98095 1184 aa26.46■■□□□ 1.83
VAMP1-205ENST00000535927 GOLGA3Q08378 1498 aa26.46■■□□□ 1.83
VAMP1-205ENST00000535927 CHD1O14646 1710 aa26.42■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms