RNA–Protein interactions for RNA: ENST00000535897.1

CHFR-211, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 4

Gene CHFR, Length 587 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-211ENST00000535897 NISCHQ9Y2I1 1504 aa20.31■□□□□ 0.84
CHFR-211ENST00000535897 ABCC9O60706 1549 aa18.52■□□□□ 0.56
CHFR-211ENST00000535897 CCDC180Q9P1Z9 1646 aa18.33■□□□□ 0.52
CHFR-211ENST00000535897 RB1CC1Q8TDY2 1594 aa17.54■□□□□ 0.4
CHFR-211ENST00000535897 DNAJC5BQ9UF47 199 aa17.46■□□□□ 0.39
CHFR-211ENST00000535897 NACADO15069 1562 aa17.35■□□□□ 0.37
CHFR-211ENST00000535897 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
CHFR-211ENST00000535897 PABPN1Q86U42 306 aaKnown RBP eCLIP17.21■□□□□ 0.35
CHFR-211ENST00000535897 UNC13AQ9UPW8 1703 aa17.14■□□□□ 0.33
CHFR-211ENST00000535897 MYO15BQ96JP2 1530 aa17.01■□□□□ 0.31
CHFR-211ENST00000535897 BICRAQ9NZM4 1560 aa17■□□□□ 0.31
CHFR-211ENST00000535897 ZCCHC6Q5VYS8 1495 aaKnown RBP16.79■□□□□ 0.28
CHFR-211ENST00000535897 SHROOM4Q9ULL8 1493 aa16.75■□□□□ 0.27
CHFR-211ENST00000535897 DCAF1Q9Y4B6 1507 aa16.73■□□□□ 0.27
CHFR-211ENST00000535897 SCRIBQ14160 1630 aa16.73■□□□□ 0.27
CHFR-211ENST00000535897 CC2D2AQ9P2K1 1620 aa16.7■□□□□ 0.26
CHFR-211ENST00000535897 CECR2Q9BXF3 1484 aa16.69■□□□□ 0.26
CHFR-211ENST00000535897 EIF4G1Q04637 1599 aaKnown RBP16.63■□□□□ 0.25
CHFR-211ENST00000535897 DNAJC5Q9H3Z4 198 aa16.18■□□□□ 0.18
CHFR-211ENST00000535897 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
CHFR-211ENST00000535897 CUX2O14529 1486 aa16■□□□□ 0.15
CHFR-211ENST00000535897 NCAPD3P42695 1498 aa15.99■□□□□ 0.15
CHFR-211ENST00000535897 ATAD2BQ9ULI0 1458 aa15.93■□□□□ 0.14
CHFR-211ENST00000535897 SMARCA2P51531 1590 aa15.92■□□□□ 0.14
CHFR-211ENST00000535897 SMARCA4P51532 1647 aa15.9■□□□□ 0.14
CHFR-211ENST00000535897 HMGXB3Q12766 1538 aa15.89■□□□□ 0.13
CHFR-211ENST00000535897 NESP48681 1621 aa15.84■□□□□ 0.13
CHFR-211ENST00000535897 BAZ1BQ9UIG0 1483 aaKnown RBP15.82■□□□□ 0.12
CHFR-211ENST00000535897 BAZ1AQ9NRL2 1556 aaPredicted RBP15.8■□□□□ 0.12
CHFR-211ENST00000535897 THOC2Q8NI27 1593 aaKnown RBP15.71■□□□□ 0.11
CHFR-211ENST00000535897 PEG3Q9GZU2 1588 aa15.7■□□□□ 0.1
CHFR-211ENST00000535897 LAMC3Q9Y6N6 1575 aa15.7■□□□□ 0.1
CHFR-211ENST00000535897 KIF21AQ7Z4S6 1674 aa15.67■□□□□ 0.1
CHFR-211ENST00000535897 MROH2BQ7Z745 1585 aa15.66■□□□□ 0.1
CHFR-211ENST00000535897 PDS5BQ9NTI5 1447 aa15.62■□□□□ 0.09
CHFR-211ENST00000535897 CADPSQ9ULU8 1353 aa15.51■□□□□ 0.07
CHFR-211ENST00000535897 MRC2Q9UBG0 1479 aa15.5■□□□□ 0.07
CHFR-211ENST00000535897 TRIM41Q8WV44 630 aa15.49■□□□□ 0.07
CHFR-211ENST00000535897 WIZO95785 1651 aa15.48■□□□□ 0.07
CHFR-211ENST00000535897 WDR62O43379 1518 aa15.46■□□□□ 0.07
CHFR-211ENST00000535897 CEP164Q9UPV0 1460 aa15.42■□□□□ 0.06
CHFR-211ENST00000535897 FANCD2Q9BXW9 1451 aa15.37■□□□□ 0.05
CHFR-211ENST00000535897 CFTRP13569 1480 aa15.3■□□□□ 0.04
CHFR-211ENST00000535897 OSCARQ8IYS5 282 aa15.26■□□□□ 0.03
CHFR-211ENST00000535897 TOP2AP11388 1531 aaKnown RBP15.26■□□□□ 0.03
CHFR-211ENST00000535897 RSF1Q96T23 1441 aaPredicted RBP15.26■□□□□ 0.03
CHFR-211ENST00000535897 URB2Q14146 1524 aaKnown RBP15.24■□□□□ 0.03
CHFR-211ENST00000535897 PRDM2Q13029 1718 aa15.18■□□□□ 0.02
CHFR-211ENST00000535897 RIMBP3CA6NJZ7 1639 aa15.1■□□□□ 0.01
CHFR-211ENST00000535897 RIMBP3BA6NNM3 1639 aa15.1■□□□□ 0.01
CHFR-211ENST00000535897 RIMBP3Q9UFD9 1639 aa15.1■□□□□ 0.01
CHFR-211ENST00000535897 IFT140Q96RY7 1462 aa15.09■□□□□ 0.01
CHFR-211ENST00000535897 ZNF608Q9ULD9 1512 aaPredicted RBP15.09■□□□□ 0.01
CHFR-211ENST00000535897 CCDC88BA6NC98 1476 aa15.08■□□□□ 0
CHFR-211ENST00000535897 TOPBP1Q92547 1522 aa15.05■□□□□ -0
CHFR-211ENST00000535897 EIF4G3O43432 1585 aaKnown RBP15.02■□□□□ -0
CHFR-211ENST00000535897 ARHGEF11O15085 1522 aa15.02■□□□□ -0
CHFR-211ENST00000535897 ABCC8Q09428 1581 aa15.01□□□□□ -0.01
CHFR-211ENST00000535897 DNMBPQ6XZF7 1577 aa14.99□□□□□ -0.01
CHFR-211ENST00000535897 CHD1O14646 1710 aa14.95□□□□□ -0.02
CHFR-211ENST00000535897 CYB5RLQ6IPT4 315 aa14.94□□□□□ -0.02
CHFR-211ENST00000535897 FBLN2P98095 1184 aa14.93□□□□□ -0.02
CHFR-211ENST00000535897 AQRO60306 1485 aaKnown RBP eCLIP14.93□□□□□ -0.02
CHFR-211ENST00000535897 TARBP1Q13395 1621 aaKnown RBP14.92□□□□□ -0.02
CHFR-211ENST00000535897 POLA1P09884 1462 aaPredicted RBP14.89□□□□□ -0.03
CHFR-211ENST00000535897 TRHP20396 242 aaPredicted RBP14.87□□□□□ -0.03
CHFR-211ENST00000535897 ARAP1Q96P48 1450 aa14.84□□□□□ -0.03
CHFR-211ENST00000535897 RAD54L2Q9Y4B4 1467 aa14.84□□□□□ -0.03
CHFR-211ENST00000535897 TDRD9Q8NDG6 1382 aaKnown RBP14.83□□□□□ -0.04
CHFR-211ENST00000535897 SOGA1O94964 1423 aa14.82□□□□□ -0.04
CHFR-211ENST00000535897 SNAPC4Q5SXM2 1469 aa14.79□□□□□ -0.04
CHFR-211ENST00000535897 FGD5Q6ZNL6 1462 aa14.78□□□□□ -0.04
CHFR-211ENST00000535897 CHMP7Q8WUX9 453 aaPredicted RBP14.76□□□□□ -0.05
CHFR-211ENST00000535897 WDR97A6NE52 1622 aa14.76□□□□□ -0.05
CHFR-211ENST00000535897 SYNJ1O43426 1573 aa14.75□□□□□ -0.05
CHFR-211ENST00000535897 CLASP1Q7Z460 1538 aa14.73□□□□□ -0.05
CHFR-211ENST00000535897 MAGI1Q96QZ7 1491 aaPredicted RBP14.73□□□□□ -0.05
CHFR-211ENST00000535897 CUX1P39880 1505 aa14.72□□□□□ -0.05
CHFR-211ENST00000535897 GRIN2BQ13224 1484 aa14.71□□□□□ -0.05
CHFR-211ENST00000535897 SYNJ2O15056 1496 aa14.69□□□□□ -0.06
CHFR-211ENST00000535897 PBRM1Q86U86 1689 aa14.68□□□□□ -0.06
CHFR-211ENST00000535897 GAPVD1Q14C86 1478 aa14.64□□□□□ -0.07
CHFR-211ENST00000535897 ABCA5Q8WWZ7 1642 aa14.59□□□□□ -0.07
CHFR-211ENST00000535897 AEBP2Q6ZN18 517 aaPredicted RBP14.58□□□□□ -0.08
CHFR-211ENST00000535897 ABCA10Q8WWZ4 1543 aa14.56□□□□□ -0.08
CHFR-211ENST00000535897 GRIN2AQ12879 1464 aa14.53□□□□□ -0.08
CHFR-211ENST00000535897 SUPT5HO00267 1087 aaKnown RBP14.52□□□□□ -0.09
CHFR-211ENST00000535897 WRNQ14191 1432 aaPredicted RBP eCLIP14.5□□□□□ -0.09
CHFR-211ENST00000535897 ADAMTS12P58397 1594 aa14.5□□□□□ -0.09
CHFR-211ENST00000535897 ERCC6L2Q5T890 1561 aa14.5□□□□□ -0.09
CHFR-211ENST00000535897 CEP170Q5SW79 1584 aa14.48□□□□□ -0.09
CHFR-211ENST00000535897 BIVM-ERCC5R4GMW8 1640 aa14.45□□□□□ -0.1
CHFR-211ENST00000535897 NUP160Q12769 1436 aa14.45□□□□□ -0.1
CHFR-211ENST00000535897 TOP2BQ02880 1626 aa14.44□□□□□ -0.1
CHFR-211ENST00000535897 FHAD1B1AJZ9 1412 aa14.43□□□□□ -0.1
CHFR-211ENST00000535897 SHROOM2Q13796 1616 aa14.42□□□□□ -0.1
CHFR-211ENST00000535897 ERICH3Q5RHP9 1530 aa14.4□□□□□ -0.1
CHFR-211ENST00000535897 PRG4Q92954 1404 aaPredicted RBP14.37□□□□□ -0.11
CHFR-211ENST00000535897 KIF13AQ9H1H9 1805 aa14.36□□□□□ -0.11
CHFR-211ENST00000535897 JPH4Q96JJ6 628 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 146.7 ms