RNA–Protein interactions for RNA: ENST00000535789.1

ATL3-202, Transcript of atlastin GTPase 3, humanhuman

TSL 4

Gene ATL3, Length 828 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-202ENST00000535789 NISCHQ9Y2I1 1504 aa40.74■■■■■ 4.11
ATL3-202ENST00000535789 CCDC180Q9P1Z9 1646 aa36.46■■■■□ 3.43
ATL3-202ENST00000535789 ABCC9O60706 1549 aa35.75■■■■□ 3.31
ATL3-202ENST00000535789 RB1CC1Q8TDY2 1594 aa34.3■■■■□ 3.08
ATL3-202ENST00000535789 NACADO15069 1562 aa34.19■■■■□ 3.06
ATL3-202ENST00000535789 ZCCHC6Q5VYS8 1495 aaKnown RBP33.95■■■■□ 3.02
ATL3-202ENST00000535789 MYO15BQ96JP2 1530 aa33.9■■■■□ 3.02
ATL3-202ENST00000535789 UNC13AQ9UPW8 1703 aa33.85■■■■□ 3.01
ATL3-202ENST00000535789 DCAF8L2P0C7V8 631 aa33.82■■■■□ 3
ATL3-202ENST00000535789 DCAF1Q9Y4B6 1507 aa33.69■■■□□ 2.98
ATL3-202ENST00000535789 BICRAQ9NZM4 1560 aa33.43■■■□□ 2.94
ATL3-202ENST00000535789 PABPN1Q86U42 306 aaKnown RBP eCLIP33.25■■■□□ 2.91
ATL3-202ENST00000535789 SCRIBQ14160 1630 aa33.21■■■□□ 2.91
ATL3-202ENST00000535789 DNAJC5BQ9UF47 199 aa33.01■■■□□ 2.87
ATL3-202ENST00000535789 SHROOM4Q9ULL8 1493 aa32.86■■■□□ 2.85
ATL3-202ENST00000535789 EIF4G1Q04637 1599 aaKnown RBP32.48■■■□□ 2.79
ATL3-202ENST00000535789 CC2D2AQ9P2K1 1620 aa32.43■■■□□ 2.78
ATL3-202ENST00000535789 CECR2Q9BXF3 1484 aa32.11■■■□□ 2.73
ATL3-202ENST00000535789 SMARCA4P51532 1647 aa31.75■■■□□ 2.67
ATL3-202ENST00000535789 BAZ1AQ9NRL2 1556 aaPredicted RBP31.57■■■□□ 2.64
ATL3-202ENST00000535789 ATAD2BQ9ULI0 1458 aa31.52■■■□□ 2.64
ATL3-202ENST00000535789 NCAPD3P42695 1498 aa31.51■■■□□ 2.63
ATL3-202ENST00000535789 SMARCA2P51531 1590 aa31.47■■■□□ 2.63
ATL3-202ENST00000535789 MROH2BQ7Z745 1585 aa31.44■■■□□ 2.62
ATL3-202ENST00000535789 PEG3Q9GZU2 1588 aa31.43■■■□□ 2.62
ATL3-202ENST00000535789 HMGXB3Q12766 1538 aa31.43■■■□□ 2.62
ATL3-202ENST00000535789 BAZ1BQ9UIG0 1483 aaKnown RBP31.23■■■□□ 2.59
ATL3-202ENST00000535789 WIZO95785 1651 aa31.16■■■□□ 2.58
ATL3-202ENST00000535789 NESP48681 1621 aa30.95■■■□□ 2.54
ATL3-202ENST00000535789 RSF1Q96T23 1441 aaPredicted RBP30.91■■■□□ 2.54
ATL3-202ENST00000535789 LAMC3Q9Y6N6 1575 aa30.79■■■□□ 2.52
ATL3-202ENST00000535789 TOP2AP11388 1531 aaKnown RBP30.73■■■□□ 2.51
ATL3-202ENST00000535789 ERCC6Q03468 1493 aa30.73■■■□□ 2.51
ATL3-202ENST00000535789 KIF21AQ7Z4S6 1674 aa30.71■■■□□ 2.51
ATL3-202ENST00000535789 THOC2Q8NI27 1593 aaKnown RBP30.64■■■□□ 2.5
ATL3-202ENST00000535789 CUX2O14529 1486 aa30.56■■■□□ 2.48
ATL3-202ENST00000535789 CADPSQ9ULU8 1353 aa30.52■■■□□ 2.48
ATL3-202ENST00000535789 PDS5BQ9NTI5 1447 aa30.42■■■□□ 2.46
ATL3-202ENST00000535789 PRDM2Q13029 1718 aa30.41■■■□□ 2.46
ATL3-202ENST00000535789 CFTRP13569 1480 aa30.37■■■□□ 2.45
ATL3-202ENST00000535789 CCDC88BA6NC98 1476 aa30.31■■■□□ 2.44
ATL3-202ENST00000535789 FANCD2Q9BXW9 1451 aa30.25■■■□□ 2.43
ATL3-202ENST00000535789 MRC2Q9UBG0 1479 aa30.25■■■□□ 2.43
ATL3-202ENST00000535789 WDR62O43379 1518 aa30.24■■■□□ 2.43
ATL3-202ENST00000535789 CEP164Q9UPV0 1460 aa30.22■■■□□ 2.43
ATL3-202ENST00000535789 URB2Q14146 1524 aaKnown RBP30.04■■■□□ 2.4
ATL3-202ENST00000535789 TOPBP1Q92547 1522 aa29.78■■■□□ 2.36
ATL3-202ENST00000535789 DNAJC5Q9H3Z4 198 aa29.78■■■□□ 2.36
ATL3-202ENST00000535789 SUPT5HO00267 1087 aaKnown RBP29.76■■■□□ 2.35
ATL3-202ENST00000535789 DNMBPQ6XZF7 1577 aa29.75■■■□□ 2.35
ATL3-202ENST00000535789 ABCC8Q09428 1581 aa29.62■■■□□ 2.33
ATL3-202ENST00000535789 TARBP1Q13395 1621 aaKnown RBP29.58■■■□□ 2.33
ATL3-202ENST00000535789 IFT140Q96RY7 1462 aa29.57■■■□□ 2.32
ATL3-202ENST00000535789 ZNF608Q9ULD9 1512 aaPredicted RBP29.56■■■□□ 2.32
ATL3-202ENST00000535789 EIF4G3O43432 1585 aaKnown RBP29.52■■■□□ 2.32
ATL3-202ENST00000535789 CUX1P39880 1505 aa29.52■■■□□ 2.32
ATL3-202ENST00000535789 POLA1P09884 1462 aaPredicted RBP29.51■■■□□ 2.31
ATL3-202ENST00000535789 FGD5Q6ZNL6 1462 aa29.41■■■□□ 2.3
ATL3-202ENST00000535789 WDR97A6NE52 1622 aa29.4■■■□□ 2.3
ATL3-202ENST00000535789 RAD54L2Q9Y4B4 1467 aa29.38■■■□□ 2.29
ATL3-202ENST00000535789 AQRO60306 1485 aaKnown RBP eCLIP29.29■■■□□ 2.28
ATL3-202ENST00000535789 BIVM-ERCC5R4GMW8 1640 aa29.27■■■□□ 2.28
ATL3-202ENST00000535789 CHD1O14646 1710 aa29.27■■■□□ 2.28
ATL3-202ENST00000535789 SOGA1O94964 1423 aa29.25■■■□□ 2.27
ATL3-202ENST00000535789 SYNJ1O43426 1573 aa29.24■■■□□ 2.27
ATL3-202ENST00000535789 TOP2BQ02880 1626 aa29.2■■■□□ 2.26
ATL3-202ENST00000535789 PBRM1Q86U86 1689 aa29.18■■■□□ 2.26
ATL3-202ENST00000535789 TDRD9Q8NDG6 1382 aaKnown RBP29.14■■■□□ 2.26
ATL3-202ENST00000535789 ABCA5Q8WWZ7 1642 aa29.13■■■□□ 2.25
ATL3-202ENST00000535789 WRNQ14191 1432 aaPredicted RBP eCLIP29.1■■■□□ 2.25
ATL3-202ENST00000535789 ABCA10Q8WWZ4 1543 aa29.09■■■□□ 2.25
ATL3-202ENST00000535789 SNAPC4Q5SXM2 1469 aa29.05■■■□□ 2.24
ATL3-202ENST00000535789 OSCARQ8IYS5 282 aa29.05■■■□□ 2.24
ATL3-202ENST00000535789 GRIN2BQ13224 1484 aa28.98■■■□□ 2.23
ATL3-202ENST00000535789 GAPVD1Q14C86 1478 aa28.97■■■□□ 2.23
ATL3-202ENST00000535789 MAGI1Q96QZ7 1491 aaPredicted RBP28.96■■■□□ 2.23
ATL3-202ENST00000535789 RIMBP3CA6NJZ7 1639 aa28.95■■■□□ 2.23
ATL3-202ENST00000535789 RIMBP3BA6NNM3 1639 aa28.95■■■□□ 2.23
ATL3-202ENST00000535789 RIMBP3Q9UFD9 1639 aa28.95■■■□□ 2.23
ATL3-202ENST00000535789 SYNJ2O15056 1496 aa28.85■■■□□ 2.21
ATL3-202ENST00000535789 CLASP1Q7Z460 1538 aa28.85■■■□□ 2.21
ATL3-202ENST00000535789 ADAMTS12P58397 1594 aa28.85■■■□□ 2.21
ATL3-202ENST00000535789 ARHGEF11O15085 1522 aa28.84■■■□□ 2.21
ATL3-202ENST00000535789 FBLN2P98095 1184 aa28.79■■■□□ 2.2
ATL3-202ENST00000535789 ERICH3Q5RHP9 1530 aa28.74■■■□□ 2.19
ATL3-202ENST00000535789 TRIM41Q8WV44 630 aa28.68■■■□□ 2.18
ATL3-202ENST00000535789 GRIN2AQ12879 1464 aa28.67■■■□□ 2.18
ATL3-202ENST00000535789 CHMP7Q8WUX9 453 aaPredicted RBP28.67■■■□□ 2.18
ATL3-202ENST00000535789 CEP170Q5SW79 1584 aa28.66■■■□□ 2.18
ATL3-202ENST00000535789 ARAP1Q96P48 1450 aa28.62■■■□□ 2.17
ATL3-202ENST00000535789 FHAD1B1AJZ9 1412 aa28.6■■■□□ 2.17
ATL3-202ENST00000535789 NUP160Q12769 1436 aa28.56■■■□□ 2.16
ATL3-202ENST00000535789 SHROOM2Q13796 1616 aa28.51■■■□□ 2.15
ATL3-202ENST00000535789 CUL7Q14999 1698 aa28.49■■■□□ 2.15
ATL3-202ENST00000535789 ERCC6L2Q5T890 1561 aa28.48■■■□□ 2.15
ATL3-202ENST00000535789 KIF27Q86VH2 1401 aa28.45■■■□□ 2.15
ATL3-202ENST00000535789 RUSC2Q8N2Y8 1516 aa28.45■■■□□ 2.15
ATL3-202ENST00000535789 IGF1RP08069 1367 aa28.39■■■□□ 2.14
ATL3-202ENST00000535789 CYB5RLQ6IPT4 315 aa28.37■■■□□ 2.13
ATL3-202ENST00000535789 CARMIL1Q5VZK9 1371 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms