RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 NISCHQ9Y2I1 1504 aa28.51■■■□□ 2.15
CLSTN3-206ENST00000535668 CCDC180Q9P1Z9 1646 aa25.63■■□□□ 1.69
CLSTN3-206ENST00000535668 ABCC9O60706 1549 aa25.47■■□□□ 1.67
CLSTN3-206ENST00000535668 RB1CC1Q8TDY2 1594 aa24.37■■□□□ 1.49
CLSTN3-206ENST00000535668 NACADO15069 1562 aa24.28■■□□□ 1.48
CLSTN3-206ENST00000535668 MYO15BQ96JP2 1530 aa24.1■■□□□ 1.45
CLSTN3-206ENST00000535668 DNAJC5BQ9UF47 199 aa24.04■■□□□ 1.44
CLSTN3-206ENST00000535668 DCAF8L2P0C7V8 631 aa23.73■■□□□ 1.39
CLSTN3-206ENST00000535668 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
CLSTN3-206ENST00000535668 DCAF1Q9Y4B6 1507 aa23.71■■□□□ 1.39
CLSTN3-206ENST00000535668 BICRAQ9NZM4 1560 aa23.69■■□□□ 1.38
CLSTN3-206ENST00000535668 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.387e-7■■■■□ 25.6
CLSTN3-206ENST00000535668 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
CLSTN3-206ENST00000535668 SHROOM4Q9ULL8 1493 aa23.57■■□□□ 1.36
CLSTN3-206ENST00000535668 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
CLSTN3-206ENST00000535668 CC2D2AQ9P2K1 1620 aa23.09■■□□□ 1.29
CLSTN3-206ENST00000535668 EIF4G1Q04637 1599 aaKnown RBP23.07■■□□□ 1.28
CLSTN3-206ENST00000535668 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
CLSTN3-206ENST00000535668 NCAPD3P42695 1498 aa22.46■■□□□ 1.19
CLSTN3-206ENST00000535668 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
CLSTN3-206ENST00000535668 HMGXB3Q12766 1538 aa22.24■■□□□ 1.15
CLSTN3-206ENST00000535668 SMARCA2P51531 1590 aa22.23■■□□□ 1.15
CLSTN3-206ENST00000535668 DNAJC5Q9H3Z4 198 aa22.22■■□□□ 1.15
CLSTN3-206ENST00000535668 SMARCA4P51532 1647 aa22.19■■□□□ 1.14
CLSTN3-206ENST00000535668 CUX2O14529 1486 aa22.18■■□□□ 1.14
CLSTN3-206ENST00000535668 PEG3Q9GZU2 1588 aa22.16■■□□□ 1.14
CLSTN3-206ENST00000535668 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
CLSTN3-206ENST00000535668 ERCC6Q03468 1493 aa22■■□□□ 1.11
CLSTN3-206ENST00000535668 BAZ1BQ9UIG0 1483 aaKnown RBP21.98■■□□□ 1.11
CLSTN3-206ENST00000535668 NESP48681 1621 aa21.88■■□□□ 1.09
CLSTN3-206ENST00000535668 MROH2BQ7Z745 1585 aa21.88■■□□□ 1.09
CLSTN3-206ENST00000535668 LAMC3Q9Y6N6 1575 aa21.87■■□□□ 1.09
CLSTN3-206ENST00000535668 THOC2Q8NI27 1593 aaKnown RBP21.77■■□□□ 1.08
CLSTN3-206ENST00000535668 PDS5BQ9NTI5 1447 aa21.74■■□□□ 1.07
CLSTN3-206ENST00000535668 CADPSQ9ULU8 1353 aa21.7■■□□□ 1.06
CLSTN3-206ENST00000535668 KIF21AQ7Z4S6 1674 aa21.59■■□□□ 1.05
CLSTN3-206ENST00000535668 WIZO95785 1651 aa21.54■■□□□ 1.04
CLSTN3-206ENST00000535668 MRC2Q9UBG0 1479 aa21.52■■□□□ 1.03
CLSTN3-206ENST00000535668 WDR62O43379 1518 aa21.51■■□□□ 1.03
CLSTN3-206ENST00000535668 CFTRP13569 1480 aa21.47■■□□□ 1.03
CLSTN3-206ENST00000535668 RSF1Q96T23 1441 aaPredicted RBP21.46■■□□□ 1.03
CLSTN3-206ENST00000535668 CEP164Q9UPV0 1460 aa21.39■■□□□ 1.01
CLSTN3-206ENST00000535668 TOP2AP11388 1531 aaKnown RBP21.38■■□□□ 1.01
CLSTN3-206ENST00000535668 FANCD2Q9BXW9 1451 aa21.37■■□□□ 1.01
CLSTN3-206ENST00000535668 URB2Q14146 1524 aaKnown RBP21.2■□□□□ 0.98
CLSTN3-206ENST00000535668 PRDM2Q13029 1718 aa21.13■□□□□ 0.97
CLSTN3-206ENST00000535668 CCDC88BA6NC98 1476 aa21.12■□□□□ 0.97
CLSTN3-206ENST00000535668 OSCARQ8IYS5 282 aa21.09■□□□□ 0.97
CLSTN3-206ENST00000535668 ABCC8Q09428 1581 aa21.04■□□□□ 0.96
CLSTN3-206ENST00000535668 IFT140Q96RY7 1462 aa21.03■□□□□ 0.96
CLSTN3-206ENST00000535668 TOPBP1Q92547 1522 aa20.97■□□□□ 0.95
CLSTN3-206ENST00000535668 DNMBPQ6XZF7 1577 aa20.9■□□□□ 0.94
CLSTN3-206ENST00000535668 ZNF608Q9ULD9 1512 aaPredicted RBP20.9■□□□□ 0.94
CLSTN3-206ENST00000535668 TRIM41Q8WV44 630 aa20.9■□□□□ 0.94
CLSTN3-206ENST00000535668 TARBP1Q13395 1621 aaKnown RBP20.82■□□□□ 0.92
CLSTN3-206ENST00000535668 EIF4G3O43432 1585 aaKnown RBP20.78■□□□□ 0.92
CLSTN3-206ENST00000535668 POLA1P09884 1462 aaPredicted RBP20.76■□□□□ 0.91
CLSTN3-206ENST00000535668 RIMBP3CA6NJZ7 1639 aa20.74■□□□□ 0.91
CLSTN3-206ENST00000535668 RIMBP3BA6NNM3 1639 aa20.74■□□□□ 0.91
CLSTN3-206ENST00000535668 RIMBP3Q9UFD9 1639 aa20.74■□□□□ 0.91
CLSTN3-206ENST00000535668 WDR97A6NE52 1622 aa20.73■□□□□ 0.91
CLSTN3-206ENST00000535668 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
CLSTN3-206ENST00000535668 AQRO60306 1485 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLSTN3-206ENST00000535668 SOGA1O94964 1423 aa20.64■□□□□ 0.89
CLSTN3-206ENST00000535668 RAD54L2Q9Y4B4 1467 aa20.59■□□□□ 0.89
CLSTN3-206ENST00000535668 CHD1O14646 1710 aa20.58■□□□□ 0.88
CLSTN3-206ENST00000535668 FGD5Q6ZNL6 1462 aa20.57■□□□□ 0.88
CLSTN3-206ENST00000535668 CUX1P39880 1505 aa20.57■□□□□ 0.88
CLSTN3-206ENST00000535668 TDRD9Q8NDG6 1382 aaKnown RBP20.56■□□□□ 0.88
CLSTN3-206ENST00000535668 MAGI1Q96QZ7 1491 aaPredicted RBP20.56■□□□□ 0.88
CLSTN3-206ENST00000535668 GRIN2BQ13224 1484 aa20.51■□□□□ 0.87
CLSTN3-206ENST00000535668 ARAP1Q96P48 1450 aa20.5■□□□□ 0.87
CLSTN3-206ENST00000535668 CLASP1Q7Z460 1538 aa20.5■□□□□ 0.87
CLSTN3-206ENST00000535668 SNAPC4Q5SXM2 1469 aa20.48■□□□□ 0.87
CLSTN3-206ENST00000535668 CYB5RLQ6IPT4 315 aa20.47■□□□□ 0.87
CLSTN3-206ENST00000535668 SYNJ2O15056 1496 aa20.46■□□□□ 0.87
CLSTN3-206ENST00000535668 ABCA10Q8WWZ4 1543 aa20.45■□□□□ 0.86
CLSTN3-206ENST00000535668 SYNJ1O43426 1573 aa20.42■□□□□ 0.86
CLSTN3-206ENST00000535668 FBLN2P98095 1184 aa20.42■□□□□ 0.86
CLSTN3-206ENST00000535668 GAPVD1Q14C86 1478 aa20.4■□□□□ 0.86
CLSTN3-206ENST00000535668 CHMP7Q8WUX9 453 aaPredicted RBP20.4■□□□□ 0.86
CLSTN3-206ENST00000535668 ABCA5Q8WWZ7 1642 aa20.37■□□□□ 0.85
CLSTN3-206ENST00000535668 WRNQ14191 1432 aaPredicted RBP eCLIP20.31■□□□□ 0.84
CLSTN3-206ENST00000535668 PBRM1Q86U86 1689 aa20.3■□□□□ 0.84
CLSTN3-206ENST00000535668 TOP2BQ02880 1626 aa20.27■□□□□ 0.83
CLSTN3-206ENST00000535668 BIVM-ERCC5R4GMW8 1640 aa20.26■□□□□ 0.83
CLSTN3-206ENST00000535668 NUP160Q12769 1436 aa20.25■□□□□ 0.83
CLSTN3-206ENST00000535668 GRIN2AQ12879 1464 aa20.23■□□□□ 0.83
CLSTN3-206ENST00000535668 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
CLSTN3-206ENST00000535668 FHAD1B1AJZ9 1412 aa20.19■□□□□ 0.82
CLSTN3-206ENST00000535668 SUPT5HO00267 1087 aaKnown RBP20.18■□□□□ 0.82
CLSTN3-206ENST00000535668 ADAMTS12P58397 1594 aa20.17■□□□□ 0.82
CLSTN3-206ENST00000535668 TRHP20396 242 aaPredicted RBP20.16■□□□□ 0.82
CLSTN3-206ENST00000535668 SHROOM2Q13796 1616 aa20.14■□□□□ 0.81
CLSTN3-206ENST00000535668 CEP170Q5SW79 1584 aa20.11■□□□□ 0.81
CLSTN3-206ENST00000535668 ERCC6L2Q5T890 1561 aa20.04■□□□□ 0.8
CLSTN3-206ENST00000535668 JPH4Q96JJ6 628 aa19.95■□□□□ 0.78
CLSTN3-206ENST00000535668 PRG4Q92954 1404 aaPredicted RBP19.93■□□□□ 0.78
CLSTN3-206ENST00000535668 IGF1RP08069 1367 aa19.91■□□□□ 0.78
CLSTN3-206ENST00000535668 RUSC2Q8N2Y8 1516 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms