RNA–Protein interactions for RNA: ENST00000535527.5

CHFR-210, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 746 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-210ENST00000535527 NISCHQ9Y2I1 1504 aa32■■■□□ 2.71
CHFR-210ENST00000535527 CCDC180Q9P1Z9 1646 aa28.43■■■□□ 2.14
CHFR-210ENST00000535527 ABCC9O60706 1549 aa28.36■■■□□ 2.13
CHFR-210ENST00000535527 DNAJC5BQ9UF47 199 aa27.1■■□□□ 1.93
CHFR-210ENST00000535527 RB1CC1Q8TDY2 1594 aa26.84■■□□□ 1.89
CHFR-210ENST00000535527 ZCCHC6Q5VYS8 1495 aaKnown RBP26.75■■□□□ 1.87
CHFR-210ENST00000535527 NACADO15069 1562 aa26.55■■□□□ 1.84
CHFR-210ENST00000535527 MYO15BQ96JP2 1530 aa26.45■■□□□ 1.83
CHFR-210ENST00000535527 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
CHFR-210ENST00000535527 DCAF8L2P0C7V8 631 aa26.38■■□□□ 1.81
CHFR-210ENST00000535527 PABPN1Q86U42 306 aaKnown RBP eCLIP26.33■■□□□ 1.81
CHFR-210ENST00000535527 UNC13AQ9UPW8 1703 aa26.28■■□□□ 1.8
CHFR-210ENST00000535527 BICRAQ9NZM4 1560 aa26.03■■□□□ 1.76
CHFR-210ENST00000535527 SCRIBQ14160 1630 aa25.99■■□□□ 1.75
CHFR-210ENST00000535527 SHROOM4Q9ULL8 1493 aa25.73■■□□□ 1.71
CHFR-210ENST00000535527 CECR2Q9BXF3 1484 aa25.65■■□□□ 1.7
CHFR-210ENST00000535527 CC2D2AQ9P2K1 1620 aa25.62■■□□□ 1.69
CHFR-210ENST00000535527 EIF4G1Q04637 1599 aaKnown RBP25.44■■□□□ 1.66
CHFR-210ENST00000535527 DNAJC5Q9H3Z4 198 aa25.36■■□□□ 1.65
CHFR-210ENST00000535527 SMARCA4P51532 1647 aa24.86■■□□□ 1.57
CHFR-210ENST00000535527 CUX2O14529 1486 aa24.76■■□□□ 1.55
CHFR-210ENST00000535527 MROH2BQ7Z745 1585 aa24.74■■□□□ 1.55
CHFR-210ENST00000535527 BAZ1AQ9NRL2 1556 aaPredicted RBP24.74■■□□□ 1.55
CHFR-210ENST00000535527 PEG3Q9GZU2 1588 aa24.59■■□□□ 1.53
CHFR-210ENST00000535527 ATAD2BQ9ULI0 1458 aa24.58■■□□□ 1.53
CHFR-210ENST00000535527 ERCC6Q03468 1493 aa24.57■■□□□ 1.52
CHFR-210ENST00000535527 WIZO95785 1651 aa24.54■■□□□ 1.52
CHFR-210ENST00000535527 NCAPD3P42695 1498 aa24.52■■□□□ 1.52
CHFR-210ENST00000535527 SMARCA2P51531 1590 aa24.5■■□□□ 1.51
CHFR-210ENST00000535527 HMGXB3Q12766 1538 aa24.46■■□□□ 1.51
CHFR-210ENST00000535527 RSF1Q96T23 1441 aaPredicted RBP24.44■■□□□ 1.5
CHFR-210ENST00000535527 BAZ1BQ9UIG0 1483 aaKnown RBP24.35■■□□□ 1.49
CHFR-210ENST00000535527 NESP48681 1621 aa24.2■■□□□ 1.46
CHFR-210ENST00000535527 TOP2AP11388 1531 aaKnown RBP24.19■■□□□ 1.46
CHFR-210ENST00000535527 THOC2Q8NI27 1593 aaKnown RBP24.08■■□□□ 1.44
CHFR-210ENST00000535527 LAMC3Q9Y6N6 1575 aa24.03■■□□□ 1.44
CHFR-210ENST00000535527 PDS5BQ9NTI5 1447 aa23.94■■□□□ 1.42
CHFR-210ENST00000535527 TRIM41Q8WV44 630 aa23.93■■□□□ 1.42
CHFR-210ENST00000535527 CCDC88BA6NC98 1476 aa23.87■■□□□ 1.41
CHFR-210ENST00000535527 KIF21AQ7Z4S6 1674 aa23.86■■□□□ 1.41
CHFR-210ENST00000535527 SUPT5HO00267 1087 aaKnown RBP23.81■■□□□ 1.4
CHFR-210ENST00000535527 PRDM2Q13029 1718 aa23.76■■□□□ 1.39
CHFR-210ENST00000535527 CADPSQ9ULU8 1353 aa23.75■■□□□ 1.39
CHFR-210ENST00000535527 CFTRP13569 1480 aa23.71■■□□□ 1.39
CHFR-210ENST00000535527 MRC2Q9UBG0 1479 aa23.71■■□□□ 1.39
CHFR-210ENST00000535527 WDR62O43379 1518 aa23.67■■□□□ 1.38
CHFR-210ENST00000535527 OSCARQ8IYS5 282 aa23.56■■□□□ 1.36
CHFR-210ENST00000535527 FANCD2Q9BXW9 1451 aa23.53■■□□□ 1.36
CHFR-210ENST00000535527 CEP164Q9UPV0 1460 aa23.51■■□□□ 1.35
CHFR-210ENST00000535527 URB2Q14146 1524 aaKnown RBP23.39■■□□□ 1.34
CHFR-210ENST00000535527 TOPBP1Q92547 1522 aa23.23■■□□□ 1.31
CHFR-210ENST00000535527 DNMBPQ6XZF7 1577 aa23.23■■□□□ 1.31
CHFR-210ENST00000535527 RIMBP3CA6NJZ7 1639 aa23.21■■□□□ 1.31
CHFR-210ENST00000535527 RIMBP3BA6NNM3 1639 aa23.21■■□□□ 1.31
CHFR-210ENST00000535527 RIMBP3Q9UFD9 1639 aa23.21■■□□□ 1.31
CHFR-210ENST00000535527 CUX1P39880 1505 aa23.2■■□□□ 1.3
CHFR-210ENST00000535527 ABCC8Q09428 1581 aa23.18■■□□□ 1.3
CHFR-210ENST00000535527 SYNJ1O43426 1573 aa23.11■■□□□ 1.29
CHFR-210ENST00000535527 ARHGEF11O15085 1522 aa23.1■■□□□ 1.29
CHFR-210ENST00000535527 IFT140Q96RY7 1462 aa23.09■■□□□ 1.29
CHFR-210ENST00000535527 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.28
CHFR-210ENST00000535527 TARBP1Q13395 1621 aaKnown RBP23.06■■□□□ 1.28
CHFR-210ENST00000535527 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
CHFR-210ENST00000535527 ZNF608Q9ULD9 1512 aaPredicted RBP23.03■■□□□ 1.28
CHFR-210ENST00000535527 FGD5Q6ZNL6 1462 aa23.03■■□□□ 1.28
CHFR-210ENST00000535527 WDR97A6NE52 1622 aa23.01■■□□□ 1.27
CHFR-210ENST00000535527 TOP2BQ02880 1626 aa23.01■■□□□ 1.27
CHFR-210ENST00000535527 CYB5RLQ6IPT4 315 aa22.99■■□□□ 1.27
CHFR-210ENST00000535527 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.27
CHFR-210ENST00000535527 RAD54L2Q9Y4B4 1467 aa22.97■■□□□ 1.27
CHFR-210ENST00000535527 EIF4G3O43432 1585 aaKnown RBP22.93■■□□□ 1.26
CHFR-210ENST00000535527 TRHP20396 242 aaPredicted RBP22.9■■□□□ 1.26
CHFR-210ENST00000535527 ARAP1Q96P48 1450 aa22.83■■□□□ 1.25
CHFR-210ENST00000535527 SOGA1O94964 1423 aa22.82■■□□□ 1.24
CHFR-210ENST00000535527 ABCA5Q8WWZ7 1642 aa22.8■■□□□ 1.24
CHFR-210ENST00000535527 CHD1O14646 1710 aa22.79■■□□□ 1.24
CHFR-210ENST00000535527 AQRO60306 1485 aaKnown RBP eCLIP22.79■■□□□ 1.241e-7■■■■■ 54.6
CHFR-210ENST00000535527 ABCA10Q8WWZ4 1543 aa22.77■■□□□ 1.24
CHFR-210ENST00000535527 PBRM1Q86U86 1689 aa22.77■■□□□ 1.24
CHFR-210ENST00000535527 FBLN2P98095 1184 aa22.75■■□□□ 1.23
CHFR-210ENST00000535527 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
CHFR-210ENST00000535527 AEBP2Q6ZN18 517 aaPredicted RBP22.66■■□□□ 1.22
CHFR-210ENST00000535527 GAPVD1Q14C86 1478 aa22.61■■□□□ 1.21
CHFR-210ENST00000535527 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
CHFR-210ENST00000535527 GRIN2BQ13224 1484 aa22.57■■□□□ 1.2
CHFR-210ENST00000535527 CLASP1Q7Z460 1538 aa22.57■■□□□ 1.2
CHFR-210ENST00000535527 ADAMTS12P58397 1594 aa22.55■■□□□ 1.2
CHFR-210ENST00000535527 CHMP7Q8WUX9 453 aaPredicted RBP22.54■■□□□ 1.2
CHFR-210ENST00000535527 RUSC2Q8N2Y8 1516 aa22.51■■□□□ 1.19
CHFR-210ENST00000535527 MAGI1Q96QZ7 1491 aaPredicted RBP22.5■■□□□ 1.19
CHFR-210ENST00000535527 ERICH3Q5RHP9 1530 aa22.48■■□□□ 1.19
CHFR-210ENST00000535527 SYNJ2O15056 1496 aa22.42■■□□□ 1.18
CHFR-210ENST00000535527 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
CHFR-210ENST00000535527 CHIC1Q5VXU3 224 aa22.4■■□□□ 1.18
CHFR-210ENST00000535527 CUL7Q14999 1698 aa22.37■■□□□ 1.17
CHFR-210ENST00000535527 GRIN2AQ12879 1464 aa22.34■■□□□ 1.17
CHFR-210ENST00000535527 CEP170Q5SW79 1584 aa22.34■■□□□ 1.17
CHFR-210ENST00000535527 IGF1RP08069 1367 aa22.34■■□□□ 1.17
CHFR-210ENST00000535527 FHAD1B1AJZ9 1412 aa22.32■■□□□ 1.16
CHFR-210ENST00000535527 NUP160Q12769 1436 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 295.8 ms