RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 NISCHQ9Y2I1 1504 aa40.08■■■■■ 4.01
CLSTN3-204ENST00000535313 CCDC180Q9P1Z9 1646 aa35.84■■■■□ 3.33
CLSTN3-204ENST00000535313 ABCC9O60706 1549 aa35.65■■■■□ 3.3
CLSTN3-204ENST00000535313 RB1CC1Q8TDY2 1594 aa34.04■■■■□ 3.04
CLSTN3-204ENST00000535313 NACADO15069 1562 aa33.87■■■■□ 3.01
CLSTN3-204ENST00000535313 DCAF8L2P0C7V8 631 aa33.82■■■■□ 3
CLSTN3-204ENST00000535313 MYO15BQ96JP2 1530 aa33.47■■■□□ 2.95
CLSTN3-204ENST00000535313 ZCCHC6Q5VYS8 1495 aaKnown RBP33.26■■■□□ 2.92
CLSTN3-204ENST00000535313 PABPN1Q86U42 306 aaKnown RBP eCLIP33.25■■■□□ 2.91
CLSTN3-204ENST00000535313 DNAJC5BQ9UF47 199 aa33.21■■■□□ 2.91
CLSTN3-204ENST00000535313 UNC13AQ9UPW8 1703 aa33.19■■■□□ 2.9
CLSTN3-204ENST00000535313 DCAF1Q9Y4B6 1507 aa33.12■■■□□ 2.89
CLSTN3-204ENST00000535313 BICRAQ9NZM4 1560 aa32.99■■■□□ 2.87
CLSTN3-204ENST00000535313 SCRIBQ14160 1630 aa32.69■■■□□ 2.82
CLSTN3-204ENST00000535313 SHROOM4Q9ULL8 1493 aa32.63■■■□□ 2.81
CLSTN3-204ENST00000535313 CC2D2AQ9P2K1 1620 aa32.2■■■□□ 2.75
CLSTN3-204ENST00000535313 EIF4G1Q04637 1599 aaKnown RBP32.19■■■□□ 2.74
CLSTN3-204ENST00000535313 CECR2Q9BXF3 1484 aa32.1■■■□□ 2.73
CLSTN3-204ENST00000535313 NCAPD3P42695 1498 aa31.26■■■□□ 2.59
CLSTN3-204ENST00000535313 SMARCA4P51532 1647 aa31.2■■■□□ 2.59
CLSTN3-204ENST00000535313 ATAD2BQ9ULI0 1458 aa31.2■■■□□ 2.58
CLSTN3-204ENST00000535313 SMARCA2P51531 1590 aa31.14■■■□□ 2.58
CLSTN3-204ENST00000535313 BAZ1AQ9NRL2 1556 aaPredicted RBP31.11■■■□□ 2.57
CLSTN3-204ENST00000535313 HMGXB3Q12766 1538 aa31.03■■■□□ 2.56
CLSTN3-204ENST00000535313 BAZ1BQ9UIG0 1483 aaKnown RBP30.93■■■□□ 2.54
CLSTN3-204ENST00000535313 PEG3Q9GZU2 1588 aa30.89■■■□□ 2.54
CLSTN3-204ENST00000535313 MROH2BQ7Z745 1585 aa30.87■■■□□ 2.53
CLSTN3-204ENST00000535313 ERCC6Q03468 1493 aa30.82■■■□□ 2.52
CLSTN3-204ENST00000535313 NESP48681 1621 aa30.67■■■□□ 2.5
CLSTN3-204ENST00000535313 CUX2O14529 1486 aa30.64■■■□□ 2.5
CLSTN3-204ENST00000535313 LAMC3Q9Y6N6 1575 aa30.51■■■□□ 2.47
CLSTN3-204ENST00000535313 WIZO95785 1651 aa30.5■■■□□ 2.47
CLSTN3-204ENST00000535313 DNAJC5Q9H3Z4 198 aa30.38■■■□□ 2.45
CLSTN3-204ENST00000535313 PDS5BQ9NTI5 1447 aa30.38■■■□□ 2.45
CLSTN3-204ENST00000535313 RSF1Q96T23 1441 aaPredicted RBP30.34■■■□□ 2.45
CLSTN3-204ENST00000535313 CADPSQ9ULU8 1353 aa30.34■■■□□ 2.45
CLSTN3-204ENST00000535313 THOC2Q8NI27 1593 aaKnown RBP30.29■■■□□ 2.44
CLSTN3-204ENST00000535313 KIF21AQ7Z4S6 1674 aa30.26■■■□□ 2.43
CLSTN3-204ENST00000535313 TOP2AP11388 1531 aaKnown RBP30.16■■■□□ 2.42
CLSTN3-204ENST00000535313 MRC2Q9UBG0 1479 aa30.06■■■□□ 2.4
CLSTN3-204ENST00000535313 CFTRP13569 1480 aa30.03■■■□□ 2.4
CLSTN3-204ENST00000535313 CEP164Q9UPV0 1460 aa30■■■□□ 2.39
CLSTN3-204ENST00000535313 FANCD2Q9BXW9 1451 aa29.99■■■□□ 2.39
CLSTN3-204ENST00000535313 WDR62O43379 1518 aa29.96■■■□□ 2.39
CLSTN3-204ENST00000535313 CCDC88BA6NC98 1476 aa29.82■■■□□ 2.36
CLSTN3-204ENST00000535313 URB2Q14146 1524 aaKnown RBP29.7■■■□□ 2.34
CLSTN3-204ENST00000535313 PRDM2Q13029 1718 aa29.69■■■□□ 2.34
CLSTN3-204ENST00000535313 TOPBP1Q92547 1522 aa29.44■■■□□ 2.3
CLSTN3-204ENST00000535313 ABCC8Q09428 1581 aa29.43■■■□□ 2.3
CLSTN3-204ENST00000535313 IFT140Q96RY7 1462 aa29.41■■■□□ 2.3
CLSTN3-204ENST00000535313 DNMBPQ6XZF7 1577 aa29.35■■■□□ 2.29
CLSTN3-204ENST00000535313 OSCARQ8IYS5 282 aa29.33■■■□□ 2.29
CLSTN3-204ENST00000535313 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
CLSTN3-204ENST00000535313 SUPT5HO00267 1087 aaKnown RBP29.23■■■□□ 2.27
CLSTN3-204ENST00000535313 TRIM41Q8WV44 630 aa29.17■■■□□ 2.26
CLSTN3-204ENST00000535313 POLA1P09884 1462 aaPredicted RBP29.15■■■□□ 2.26
CLSTN3-204ENST00000535313 EIF4G3O43432 1585 aaKnown RBP29.13■■■□□ 2.25
CLSTN3-204ENST00000535313 TARBP1Q13395 1621 aaKnown RBP29.12■■■□□ 2.25
CLSTN3-204ENST00000535313 AQRO60306 1485 aaKnown RBP eCLIP29.08■■■□□ 2.25
CLSTN3-204ENST00000535313 SOGA1O94964 1423 aa29.05■■■□□ 2.24
CLSTN3-204ENST00000535313 RAD54L2Q9Y4B4 1467 aa29.04■■■□□ 2.24
CLSTN3-204ENST00000535313 FGD5Q6ZNL6 1462 aa29■■■□□ 2.23
CLSTN3-204ENST00000535313 CUX1P39880 1505 aa28.99■■■□□ 2.23
CLSTN3-204ENST00000535313 TDRD9Q8NDG6 1382 aaKnown RBP28.96■■■□□ 2.23
CLSTN3-204ENST00000535313 FBLN2P98095 1184 aa28.91■■■□□ 2.22
CLSTN3-204ENST00000535313 WDR97A6NE52 1622 aa28.88■■■□□ 2.21
CLSTN3-204ENST00000535313 CHD1O14646 1710 aa28.86■■■□□ 2.21
CLSTN3-204ENST00000535313 RIMBP3CA6NJZ7 1639 aa28.84■■■□□ 2.21
CLSTN3-204ENST00000535313 RIMBP3BA6NNM3 1639 aa28.84■■■□□ 2.21
CLSTN3-204ENST00000535313 RIMBP3Q9UFD9 1639 aa28.84■■■□□ 2.21
CLSTN3-204ENST00000535313 ARHGEF11O15085 1522 aa28.79■■■□□ 2.2
CLSTN3-204ENST00000535313 SNAPC4Q5SXM2 1469 aa28.79■■■□□ 2.2
CLSTN3-204ENST00000535313 GRIN2BQ13224 1484 aa28.77■■■□□ 2.2
CLSTN3-204ENST00000535313 MAGI1Q96QZ7 1491 aaPredicted RBP28.74■■■□□ 2.19
CLSTN3-204ENST00000535313 CHMP7Q8WUX9 453 aaPredicted RBP28.73■■■□□ 2.19
CLSTN3-204ENST00000535313 GAPVD1Q14C86 1478 aa28.7■■■□□ 2.18
CLSTN3-204ENST00000535313 ABCA10Q8WWZ4 1543 aa28.69■■■□□ 2.18
CLSTN3-204ENST00000535313 WRNQ14191 1432 aaPredicted RBP eCLIP28.65■■■□□ 2.18
CLSTN3-204ENST00000535313 SYNJ2O15056 1496 aa28.64■■■□□ 2.17
CLSTN3-204ENST00000535313 CYB5RLQ6IPT4 315 aa28.62■■■□□ 2.17
CLSTN3-204ENST00000535313 PBRM1Q86U86 1689 aa28.61■■■□□ 2.17
CLSTN3-204ENST00000535313 SYNJ1O43426 1573 aa28.6■■■□□ 2.17
CLSTN3-204ENST00000535313 TOP2BQ02880 1626 aa28.6■■■□□ 2.17
CLSTN3-204ENST00000535313 ABCA5Q8WWZ7 1642 aa28.59■■■□□ 2.17
CLSTN3-204ENST00000535313 BIVM-ERCC5R4GMW8 1640 aa28.58■■■□□ 2.17
CLSTN3-204ENST00000535313 CLASP1Q7Z460 1538 aa28.55■■■□□ 2.16
CLSTN3-204ENST00000535313 ARAP1Q96P48 1450 aa28.53■■■□□ 2.16
CLSTN3-204ENST00000535313 GRIN2AQ12879 1464 aa28.38■■■□□ 2.13
CLSTN3-204ENST00000535313 ADAMTS12P58397 1594 aa28.37■■■□□ 2.13
CLSTN3-204ENST00000535313 FHAD1B1AJZ9 1412 aa28.35■■■□□ 2.13
CLSTN3-204ENST00000535313 ERICH3Q5RHP9 1530 aa28.34■■■□□ 2.13
CLSTN3-204ENST00000535313 NUP160Q12769 1436 aa28.27■■■□□ 2.12
CLSTN3-204ENST00000535313 TRHP20396 242 aaPredicted RBP28.25■■■□□ 2.11
CLSTN3-204ENST00000535313 CEP170Q5SW79 1584 aa28.24■■■□□ 2.11
CLSTN3-204ENST00000535313 ERCC6L2Q5T890 1561 aa28.11■■■□□ 2.09
CLSTN3-204ENST00000535313 KIF27Q86VH2 1401 aa28.1■■■□□ 2.09
CLSTN3-204ENST00000535313 SHROOM2Q13796 1616 aa28.08■■■□□ 2.09
CLSTN3-204ENST00000535313 IGF1RP08069 1367 aa28.04■■■□□ 2.08
CLSTN3-204ENST00000535313 JPH4Q96JJ6 628 aa28.03■■■□□ 2.08
CLSTN3-204ENST00000535313 PRG4Q92954 1404 aaPredicted RBP28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 888 ms