RNA–Protein interactions for RNA: ENST00000535143.1

MSRB3-204, Transcript of methionine sulfoxide reductase B3, humanhuman

TSL 3

Gene MSRB3, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSRB3-204ENST00000535143 NISCHQ9Y2I1 1504 aa43.43■■■■■ 4.54
MSRB3-204ENST00000535143 ABCC9O60706 1549 aa39.58■■■■□ 3.93
MSRB3-204ENST00000535143 CCDC180Q9P1Z9 1646 aa39.13■■■■□ 3.85
MSRB3-204ENST00000535143 DNAJC5BQ9UF47 199 aa37.42■■■■□ 3.58
MSRB3-204ENST00000535143 RB1CC1Q8TDY2 1594 aa37.42■■■■□ 3.58
MSRB3-204ENST00000535143 NACADO15069 1562 aa37.04■■■■□ 3.52
MSRB3-204ENST00000535143 DCAF8L2P0C7V8 631 aa36.88■■■■□ 3.49
MSRB3-204ENST00000535143 PABPN1Q86U42 306 aaKnown RBP eCLIP36.79■■■■□ 3.48
MSRB3-204ENST00000535143 UNC13AQ9UPW8 1703 aa36.7■■■■□ 3.47
MSRB3-204ENST00000535143 BICRAQ9NZM4 1560 aa36.4■■■■□ 3.42
MSRB3-204ENST00000535143 MYO15BQ96JP2 1530 aa36.34■■■■□ 3.41
MSRB3-204ENST00000535143 ZCCHC6Q5VYS8 1495 aaKnown RBP35.94■■■■□ 3.34
MSRB3-204ENST00000535143 DCAF1Q9Y4B6 1507 aa35.78■■■■□ 3.32
MSRB3-204ENST00000535143 SCRIBQ14160 1630 aa35.75■■■■□ 3.31
MSRB3-204ENST00000535143 SHROOM4Q9ULL8 1493 aa35.73■■■■□ 3.31
MSRB3-204ENST00000535143 CC2D2AQ9P2K1 1620 aa35.72■■■■□ 3.31
MSRB3-204ENST00000535143 CECR2Q9BXF3 1484 aa35.65■■■■□ 3.3
MSRB3-204ENST00000535143 EIF4G1Q04637 1599 aaKnown RBP35.53■■■■□ 3.28
MSRB3-204ENST00000535143 DNAJC5Q9H3Z4 198 aa34.53■■■■□ 3.12
MSRB3-204ENST00000535143 NCAPD3P42695 1498 aa34.19■■■■□ 3.06
MSRB3-204ENST00000535143 ERCC6Q03468 1493 aa34.16■■■■□ 3.06
MSRB3-204ENST00000535143 CUX2O14529 1486 aa34.15■■■■□ 3.06
MSRB3-204ENST00000535143 ATAD2BQ9ULI0 1458 aa34.09■■■■□ 3.05
MSRB3-204ENST00000535143 SMARCA4P51532 1647 aa34.01■■■■□ 3.03
MSRB3-204ENST00000535143 HMGXB3Q12766 1538 aa33.94■■■■□ 3.02
MSRB3-204ENST00000535143 SMARCA2P51531 1590 aa33.94■■■■□ 3.02
MSRB3-204ENST00000535143 NESP48681 1621 aa33.91■■■■□ 3.02
MSRB3-204ENST00000535143 BAZ1BQ9UIG0 1483 aaKnown RBP33.76■■■■□ 3
MSRB3-204ENST00000535143 BAZ1AQ9NRL2 1556 aaPredicted RBP33.72■■■□□ 2.99
MSRB3-204ENST00000535143 THOC2Q8NI27 1593 aaKnown RBP33.63■■■□□ 2.97
MSRB3-204ENST00000535143 PEG3Q9GZU2 1588 aa33.6■■■□□ 2.97
MSRB3-204ENST00000535143 MROH2BQ7Z745 1585 aa33.51■■■□□ 2.96
MSRB3-204ENST00000535143 LAMC3Q9Y6N6 1575 aa33.51■■■□□ 2.96
MSRB3-204ENST00000535143 KIF21AQ7Z4S6 1674 aa33.48■■■□□ 2.95
MSRB3-204ENST00000535143 PDS5BQ9NTI5 1447 aa33.3■■■□□ 2.92
MSRB3-204ENST00000535143 CADPSQ9ULU8 1353 aa33.15■■■□□ 2.9
MSRB3-204ENST00000535143 WIZO95785 1651 aa33.13■■■□□ 2.89
MSRB3-204ENST00000535143 MRC2Q9UBG0 1479 aa33.1■■■□□ 2.89
MSRB3-204ENST00000535143 WDR62O43379 1518 aa33.04■■■□□ 2.88
MSRB3-204ENST00000535143 TRIM41Q8WV44 630 aa33■■■□□ 2.87
MSRB3-204ENST00000535143 CEP164Q9UPV0 1460 aa32.89■■■□□ 2.86
MSRB3-204ENST00000535143 FANCD2Q9BXW9 1451 aa32.83■■■□□ 2.85
MSRB3-204ENST00000535143 CFTRP13569 1480 aa32.71■■■□□ 2.83
MSRB3-204ENST00000535143 RSF1Q96T23 1441 aaPredicted RBP32.65■■■□□ 2.82
MSRB3-204ENST00000535143 TOP2AP11388 1531 aaKnown RBP32.63■■■□□ 2.81
MSRB3-204ENST00000535143 URB2Q14146 1524 aaKnown RBP32.61■■■□□ 2.81
MSRB3-204ENST00000535143 OSCARQ8IYS5 282 aa32.51■■■□□ 2.79
MSRB3-204ENST00000535143 PRDM2Q13029 1718 aa32.43■■■□□ 2.78
MSRB3-204ENST00000535143 ZNF608Q9ULD9 1512 aaPredicted RBP32.3■■■□□ 2.76
MSRB3-204ENST00000535143 CCDC88BA6NC98 1476 aa32.26■■■□□ 2.75
MSRB3-204ENST00000535143 RIMBP3CA6NJZ7 1639 aa32.26■■■□□ 2.75
MSRB3-204ENST00000535143 RIMBP3BA6NNM3 1639 aa32.26■■■□□ 2.75
MSRB3-204ENST00000535143 RIMBP3Q9UFD9 1639 aa32.26■■■□□ 2.75
MSRB3-204ENST00000535143 IFT140Q96RY7 1462 aa32.23■■■□□ 2.75
MSRB3-204ENST00000535143 TOPBP1Q92547 1522 aa32.18■■■□□ 2.74
MSRB3-204ENST00000535143 EIF4G3O43432 1585 aaKnown RBP32.11■■■□□ 2.73
MSRB3-204ENST00000535143 ARHGEF11O15085 1522 aa32.09■■■□□ 2.73
MSRB3-204ENST00000535143 DNMBPQ6XZF7 1577 aa32.02■■■□□ 2.72
MSRB3-204ENST00000535143 ABCC8Q09428 1581 aa31.97■■■□□ 2.71
MSRB3-204ENST00000535143 CHD1O14646 1710 aa31.96■■■□□ 2.71
MSRB3-204ENST00000535143 AQRO60306 1485 aaKnown RBP eCLIP31.93■■■□□ 2.7
MSRB3-204ENST00000535143 TARBP1Q13395 1621 aaKnown RBP31.92■■■□□ 2.7
MSRB3-204ENST00000535143 CYB5RLQ6IPT4 315 aa31.85■■■□□ 2.69
MSRB3-204ENST00000535143 POLA1P09884 1462 aaPredicted RBP31.83■■■□□ 2.69
MSRB3-204ENST00000535143 FBLN2P98095 1184 aa31.79■■■□□ 2.68
MSRB3-204ENST00000535143 ARAP1Q96P48 1450 aa31.77■■■□□ 2.68
MSRB3-204ENST00000535143 RAD54L2Q9Y4B4 1467 aa31.77■■■□□ 2.68
MSRB3-204ENST00000535143 TDRD9Q8NDG6 1382 aaKnown RBP31.67■■■□□ 2.66
MSRB3-204ENST00000535143 TRHP20396 242 aaPredicted RBP31.63■■■□□ 2.65
MSRB3-204ENST00000535143 SOGA1O94964 1423 aa31.63■■■□□ 2.65
MSRB3-204ENST00000535143 SNAPC4Q5SXM2 1469 aa31.61■■■□□ 2.65
MSRB3-204ENST00000535143 FGD5Q6ZNL6 1462 aa31.6■■■□□ 2.65
MSRB3-204ENST00000535143 CLASP1Q7Z460 1538 aa31.52■■■□□ 2.64
MSRB3-204ENST00000535143 CUX1P39880 1505 aa31.51■■■□□ 2.63
MSRB3-204ENST00000535143 WDR97A6NE52 1622 aa31.48■■■□□ 2.63
MSRB3-204ENST00000535143 SYNJ1O43426 1573 aa31.44■■■□□ 2.62
MSRB3-204ENST00000535143 CHMP7Q8WUX9 453 aaPredicted RBP31.44■■■□□ 2.62
MSRB3-204ENST00000535143 MAGI1Q96QZ7 1491 aaPredicted RBP31.43■■■□□ 2.62
MSRB3-204ENST00000535143 GRIN2BQ13224 1484 aa31.4■■■□□ 2.62
MSRB3-204ENST00000535143 PBRM1Q86U86 1689 aa31.35■■■□□ 2.61
MSRB3-204ENST00000535143 SYNJ2O15056 1496 aa31.35■■■□□ 2.61
MSRB3-204ENST00000535143 GAPVD1Q14C86 1478 aa31.26■■■□□ 2.59
MSRB3-204ENST00000535143 ABCA5Q8WWZ7 1642 aa31.2■■■□□ 2.58
MSRB3-204ENST00000535143 ABCA10Q8WWZ4 1543 aa31.17■■■□□ 2.58
MSRB3-204ENST00000535143 ERCC6L2Q5T890 1561 aa31.08■■■□□ 2.57
MSRB3-204ENST00000535143 GRIN2AQ12879 1464 aa31.02■■■□□ 2.56
MSRB3-204ENST00000535143 ADAMTS12P58397 1594 aa31.01■■■□□ 2.56
MSRB3-204ENST00000535143 SUPT5HO00267 1087 aaKnown RBP31■■■□□ 2.55
MSRB3-204ENST00000535143 CEP170Q5SW79 1584 aa30.99■■■□□ 2.55
MSRB3-204ENST00000535143 WRNQ14191 1432 aaPredicted RBP eCLIP30.94■■■□□ 2.54
MSRB3-204ENST00000535143 AEBP2Q6ZN18 517 aaPredicted RBP30.94■■■□□ 2.54
MSRB3-204ENST00000535143 NUP160Q12769 1436 aa30.92■■■□□ 2.54
MSRB3-204ENST00000535143 BIVM-ERCC5R4GMW8 1640 aa30.89■■■□□ 2.54
MSRB3-204ENST00000535143 TOP2BQ02880 1626 aa30.87■■■□□ 2.53
MSRB3-204ENST00000535143 SHROOM2Q13796 1616 aa30.84■■■□□ 2.53
MSRB3-204ENST00000535143 FHAD1B1AJZ9 1412 aa30.82■■■□□ 2.52
MSRB3-204ENST00000535143 ERICH3Q5RHP9 1530 aa30.75■■■□□ 2.51
MSRB3-204ENST00000535143 KIF13AQ9H1H9 1805 aa30.69■■■□□ 2.5
MSRB3-204ENST00000535143 PRG4Q92954 1404 aaPredicted RBP30.67■■■□□ 2.5
MSRB3-204ENST00000535143 RUSC2Q8N2Y8 1516 aa30.58■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 131.6 ms