RNA–Protein interactions for RNA: ENST00000534602.5

GSDMD-216, Transcript of gasdermin D, humanhuman

TSL 2

Gene GSDMD, Length 480 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GSDMD-216ENST00000534602 NISCHQ9Y2I1 1504 aa53.3■■■■■ 6.12
GSDMD-216ENST00000534602 CCDC180Q9P1Z9 1646 aa47.68■■■■■ 5.22
GSDMD-216ENST00000534602 ABCC9O60706 1549 aa47.24■■■■■ 5.15
GSDMD-216ENST00000534602 RB1CC1Q8TDY2 1594 aa45.2■■■■■ 4.83
GSDMD-216ENST00000534602 NACADO15069 1562 aa45.02■■■■■ 4.8
GSDMD-216ENST00000534602 DCAF8L2P0C7V8 631 aa44.74■■■■■ 4.75
GSDMD-216ENST00000534602 MYO15BQ96JP2 1530 aa44.59■■■■■ 4.73
GSDMD-216ENST00000534602 ZCCHC6Q5VYS8 1495 aaKnown RBP44.25■■■■■ 4.67
GSDMD-216ENST00000534602 DCAF1Q9Y4B6 1507 aa44.13■■■■■ 4.65
GSDMD-216ENST00000534602 UNC13AQ9UPW8 1703 aa44.1■■■■■ 4.65
GSDMD-216ENST00000534602 PABPN1Q86U42 306 aaKnown RBP eCLIP44.03■■■■■ 4.645e-7■■■■□ 25.8
GSDMD-216ENST00000534602 DNAJC5BQ9UF47 199 aa43.98■■■■■ 4.63
GSDMD-216ENST00000534602 BICRAQ9NZM4 1560 aa43.84■■■■■ 4.61
GSDMD-216ENST00000534602 SHROOM4Q9ULL8 1493 aa43.42■■■■■ 4.54
GSDMD-216ENST00000534602 SCRIBQ14160 1630 aa43.37■■■■■ 4.53
GSDMD-216ENST00000534602 EIF4G1Q04637 1599 aaKnown RBP42.74■■■■■ 4.43
GSDMD-216ENST00000534602 CC2D2AQ9P2K1 1620 aa42.71■■■■■ 4.43
GSDMD-216ENST00000534602 CECR2Q9BXF3 1484 aa42.55■■■■■ 4.4
GSDMD-216ENST00000534602 NCAPD3P42695 1498 aa41.56■■■■■ 4.24
GSDMD-216ENST00000534602 SMARCA4P51532 1647 aa41.47■■■■■ 4.23
GSDMD-216ENST00000534602 ATAD2BQ9ULI0 1458 aa41.45■■■■■ 4.23
GSDMD-216ENST00000534602 SMARCA2P51531 1590 aa41.37■■■■■ 4.21
GSDMD-216ENST00000534602 BAZ1AQ9NRL2 1556 aaPredicted RBP41.37■■■■■ 4.21
GSDMD-216ENST00000534602 HMGXB3Q12766 1538 aa41.27■■■■■ 4.2
GSDMD-216ENST00000534602 PEG3Q9GZU2 1588 aa41.13■■■■■ 4.18
GSDMD-216ENST00000534602 BAZ1BQ9UIG0 1483 aaKnown RBP41.05■■■■■ 4.16
GSDMD-216ENST00000534602 MROH2BQ7Z745 1585 aa41.03■■■■■ 4.16
GSDMD-216ENST00000534602 ERCC6Q03468 1493 aa40.79■■■■■ 4.12
GSDMD-216ENST00000534602 NESP48681 1621 aa40.67■■■■■ 4.1
GSDMD-216ENST00000534602 CUX2O14529 1486 aa40.65■■■■■ 4.1
GSDMD-216ENST00000534602 LAMC3Q9Y6N6 1575 aa40.54■■■■■ 4.08
GSDMD-216ENST00000534602 WIZO95785 1651 aa40.53■■■■■ 4.08
GSDMD-216ENST00000534602 RSF1Q96T23 1441 aaPredicted RBP40.35■■■■■ 4.05
GSDMD-216ENST00000534602 PDS5BQ9NTI5 1447 aa40.31■■■■■ 4.04
GSDMD-216ENST00000534602 CADPSQ9ULU8 1353 aa40.3■■■■■ 4.04
GSDMD-216ENST00000534602 THOC2Q8NI27 1593 aaKnown RBP40.22■■■■■ 4.03
GSDMD-216ENST00000534602 DNAJC5Q9H3Z4 198 aa40.2■■■■■ 4.03
GSDMD-216ENST00000534602 KIF21AQ7Z4S6 1674 aa40.16■■■■■ 4.02
GSDMD-216ENST00000534602 TOP2AP11388 1531 aaKnown RBP40.11■■■■■ 4.01
GSDMD-216ENST00000534602 CFTRP13569 1480 aa39.92■■■■□ 3.98
GSDMD-216ENST00000534602 MRC2Q9UBG0 1479 aa39.9■■■■□ 3.98
GSDMD-216ENST00000534602 CEP164Q9UPV0 1460 aa39.81■■■■□ 3.96
GSDMD-216ENST00000534602 FANCD2Q9BXW9 1451 aa39.81■■■■□ 3.96
GSDMD-216ENST00000534602 WDR62O43379 1518 aa39.8■■■■□ 3.96
GSDMD-216ENST00000534602 CCDC88BA6NC98 1476 aa39.63■■■■□ 3.94
GSDMD-216ENST00000534602 PRDM2Q13029 1718 aa39.5■■■■□ 3.91
GSDMD-216ENST00000534602 URB2Q14146 1524 aaKnown RBP39.43■■■■□ 3.9
GSDMD-216ENST00000534602 ABCC8Q09428 1581 aa39.12■■■■□ 3.85
GSDMD-216ENST00000534602 TOPBP1Q92547 1522 aa39.09■■■■□ 3.85
GSDMD-216ENST00000534602 IFT140Q96RY7 1462 aa39.04■■■■□ 3.84
GSDMD-216ENST00000534602 DNMBPQ6XZF7 1577 aa38.99■■■■□ 3.83
GSDMD-216ENST00000534602 ZNF608Q9ULD9 1512 aaPredicted RBP38.87■■■■□ 3.81
GSDMD-216ENST00000534602 OSCARQ8IYS5 282 aa38.86■■■■□ 3.81
GSDMD-216ENST00000534602 SUPT5HO00267 1087 aaKnown RBP38.76■■■■□ 3.8
GSDMD-216ENST00000534602 TARBP1Q13395 1621 aaKnown RBP38.71■■■■□ 3.79
GSDMD-216ENST00000534602 POLA1P09884 1462 aaPredicted RBP38.71■■■■□ 3.79
GSDMD-216ENST00000534602 EIF4G3O43432 1585 aaKnown RBP38.68■■■■□ 3.78
GSDMD-216ENST00000534602 AQRO60306 1485 aaKnown RBP eCLIP38.57■■■■□ 3.76
GSDMD-216ENST00000534602 SOGA1O94964 1423 aa38.56■■■■□ 3.76
GSDMD-216ENST00000534602 CUX1P39880 1505 aa38.53■■■■□ 3.76
GSDMD-216ENST00000534602 RAD54L2Q9Y4B4 1467 aa38.53■■■■□ 3.76
GSDMD-216ENST00000534602 FGD5Q6ZNL6 1462 aa38.51■■■■□ 3.76
GSDMD-216ENST00000534602 TRIM41Q8WV44 630 aa38.48■■■■□ 3.75
GSDMD-216ENST00000534602 WDR97A6NE52 1622 aa38.43■■■■□ 3.74
GSDMD-216ENST00000534602 TDRD9Q8NDG6 1382 aaKnown RBP38.41■■■■□ 3.74
GSDMD-216ENST00000534602 CHD1O14646 1710 aa38.29■■■■□ 3.72
GSDMD-216ENST00000534602 RIMBP3CA6NJZ7 1639 aa38.23■■■■□ 3.71
GSDMD-216ENST00000534602 RIMBP3BA6NNM3 1639 aa38.23■■■■□ 3.71
GSDMD-216ENST00000534602 RIMBP3Q9UFD9 1639 aa38.23■■■■□ 3.71
GSDMD-216ENST00000534602 FBLN2P98095 1184 aa38.23■■■■□ 3.71
GSDMD-216ENST00000534602 GRIN2BQ13224 1484 aa38.2■■■■□ 3.71
GSDMD-216ENST00000534602 SNAPC4Q5SXM2 1469 aa38.19■■■■□ 3.7
GSDMD-216ENST00000534602 ARHGEF11O15085 1522 aa38.18■■■■□ 3.7
GSDMD-216ENST00000534602 MAGI1Q96QZ7 1491 aaPredicted RBP38.17■■■■□ 3.7
GSDMD-216ENST00000534602 ABCA10Q8WWZ4 1543 aa38.14■■■■□ 3.7
GSDMD-216ENST00000534602 GAPVD1Q14C86 1478 aa38.09■■■■□ 3.69
GSDMD-216ENST00000534602 WRNQ14191 1432 aaPredicted RBP eCLIP38.07■■■■□ 3.69
GSDMD-216ENST00000534602 CHMP7Q8WUX9 453 aaPredicted RBP38.07■■■■□ 3.68
GSDMD-216ENST00000534602 TOP2BQ02880 1626 aa38.05■■■■□ 3.68
GSDMD-216ENST00000534602 BIVM-ERCC5R4GMW8 1640 aa38.04■■■■□ 3.68
GSDMD-216ENST00000534602 SYNJ2O15056 1496 aa38.03■■■■□ 3.68
GSDMD-216ENST00000534602 ABCA5Q8WWZ7 1642 aa38.01■■■■□ 3.68
GSDMD-216ENST00000534602 PBRM1Q86U86 1689 aa38■■■■□ 3.67
GSDMD-216ENST00000534602 SYNJ1O43426 1573 aa37.96■■■■□ 3.67
GSDMD-216ENST00000534602 CLASP1Q7Z460 1538 aa37.92■■■■□ 3.66
GSDMD-216ENST00000534602 CYB5RLQ6IPT4 315 aa37.87■■■■□ 3.65
GSDMD-216ENST00000534602 ARAP1Q96P48 1450 aa37.82■■■■□ 3.64
GSDMD-216ENST00000534602 ADAMTS12P58397 1594 aa37.69■■■■□ 3.62
GSDMD-216ENST00000534602 GRIN2AQ12879 1464 aa37.69■■■■□ 3.62
GSDMD-216ENST00000534602 ERICH3Q5RHP9 1530 aa37.68■■■■□ 3.62
GSDMD-216ENST00000534602 FHAD1B1AJZ9 1412 aa37.65■■■■□ 3.62
GSDMD-216ENST00000534602 NUP160Q12769 1436 aa37.57■■■■□ 3.6
GSDMD-216ENST00000534602 CEP170Q5SW79 1584 aa37.5■■■■□ 3.59
GSDMD-216ENST00000534602 SHROOM2Q13796 1616 aa37.35■■■■□ 3.57
GSDMD-216ENST00000534602 KIF27Q86VH2 1401 aa37.34■■■■□ 3.57
GSDMD-216ENST00000534602 TRHP20396 242 aaPredicted RBP37.31■■■■□ 3.56
GSDMD-216ENST00000534602 ERCC6L2Q5T890 1561 aa37.29■■■■□ 3.56
GSDMD-216ENST00000534602 IGF1RP08069 1367 aa37.28■■■■□ 3.56
GSDMD-216ENST00000534602 CUL7Q14999 1698 aa37.18■■■■□ 3.54
GSDMD-216ENST00000534602 JPH4Q96JJ6 628 aa37.18■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms