RNA–Protein interactions for RNA: ENST00000534307.1

SF3B2-215, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 3

Gene SF3B2, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-215ENST00000534307 NISCHQ9Y2I1 1504 aa34.93■■■■□ 3.18
SF3B2-215ENST00000534307 ABCC9O60706 1549 aa31.44■■■□□ 2.62
SF3B2-215ENST00000534307 CCDC180Q9P1Z9 1646 aa31.21■■■□□ 2.59
SF3B2-215ENST00000534307 DNAJC5BQ9UF47 199 aa29.96■■■□□ 2.39
SF3B2-215ENST00000534307 RB1CC1Q8TDY2 1594 aa29.7■■■□□ 2.35
SF3B2-215ENST00000534307 NACADO15069 1562 aa29.4■■■□□ 2.3
SF3B2-215ENST00000534307 UNC13AQ9UPW8 1703 aa29.24■■■□□ 2.27
SF3B2-215ENST00000534307 MYO15BQ96JP2 1530 aa29.16■■■□□ 2.26
SF3B2-215ENST00000534307 DCAF8L2P0C7V8 631 aa29.14■■■□□ 2.26
SF3B2-215ENST00000534307 PABPN1Q86U42 306 aaKnown RBP eCLIP29.07■■■□□ 2.24
SF3B2-215ENST00000534307 ZCCHC6Q5VYS8 1495 aaKnown RBP29.04■■■□□ 2.24
SF3B2-215ENST00000534307 BICRAQ9NZM4 1560 aa28.94■■■□□ 2.22
SF3B2-215ENST00000534307 DCAF1Q9Y4B6 1507 aa28.91■■■□□ 2.22
SF3B2-215ENST00000534307 CC2D2AQ9P2K1 1620 aa28.44■■■□□ 2.14
SF3B2-215ENST00000534307 SHROOM4Q9ULL8 1493 aa28.41■■■□□ 2.14
SF3B2-215ENST00000534307 SCRIBQ14160 1630 aa28.41■■■□□ 2.14
SF3B2-215ENST00000534307 CECR2Q9BXF3 1484 aa28.37■■■□□ 2.13
SF3B2-215ENST00000534307 EIF4G1Q04637 1599 aaKnown RBP28.23■■■□□ 2.11
SF3B2-215ENST00000534307 DNAJC5Q9H3Z4 198 aa27.88■■■□□ 2.05
SF3B2-215ENST00000534307 CUX2O14529 1486 aa27.34■■□□□ 1.97
SF3B2-215ENST00000534307 SMARCA4P51532 1647 aa27.17■■□□□ 1.94
SF3B2-215ENST00000534307 NCAPD3P42695 1498 aa27.14■■□□□ 1.94
SF3B2-215ENST00000534307 ERCC6Q03468 1493 aa27.14■■□□□ 1.94
SF3B2-215ENST00000534307 ATAD2BQ9ULI0 1458 aa27.1■■□□□ 1.93
SF3B2-215ENST00000534307 BAZ1AQ9NRL2 1556 aaPredicted RBP27.07■■□□□ 1.92
SF3B2-215ENST00000534307 SMARCA2P51531 1590 aa27.04■■□□□ 1.92
SF3B2-215ENST00000534307 HMGXB3Q12766 1538 aa26.99■■□□□ 1.91
SF3B2-215ENST00000534307 PEG3Q9GZU2 1588 aa26.95■■□□□ 1.9
SF3B2-215ENST00000534307 MROH2BQ7Z745 1585 aa26.92■■□□□ 1.9
SF3B2-215ENST00000534307 NESP48681 1621 aa26.87■■□□□ 1.89
SF3B2-215ENST00000534307 BAZ1BQ9UIG0 1483 aaKnown RBP26.82■■□□□ 1.88
SF3B2-215ENST00000534307 THOC2Q8NI27 1593 aaKnown RBP26.82■■□□□ 1.88
SF3B2-215ENST00000534307 KIF21AQ7Z4S6 1674 aa26.63■■□□□ 1.85
SF3B2-215ENST00000534307 LAMC3Q9Y6N6 1575 aa26.6■■□□□ 1.85
SF3B2-215ENST00000534307 WIZO95785 1651 aa26.6■■□□□ 1.85
SF3B2-215ENST00000534307 RSF1Q96T23 1441 aaPredicted RBP26.48■■□□□ 1.83
SF3B2-215ENST00000534307 TRIM41Q8WV44 630 aa26.4■■□□□ 1.82
SF3B2-215ENST00000534307 PDS5BQ9NTI5 1447 aa26.36■■□□□ 1.81
SF3B2-215ENST00000534307 CADPSQ9ULU8 1353 aa26.31■■□□□ 1.8
SF3B2-215ENST00000534307 TOP2AP11388 1531 aaKnown RBP26.29■■□□□ 1.8
SF3B2-215ENST00000534307 WDR62O43379 1518 aa26.26■■□□□ 1.79
SF3B2-215ENST00000534307 MRC2Q9UBG0 1479 aa26.24■■□□□ 1.79
SF3B2-215ENST00000534307 CFTRP13569 1480 aa26.11■■□□□ 1.77
SF3B2-215ENST00000534307 CEP164Q9UPV0 1460 aa26.01■■□□□ 1.75
SF3B2-215ENST00000534307 FANCD2Q9BXW9 1451 aa26■■□□□ 1.75
SF3B2-215ENST00000534307 CCDC88BA6NC98 1476 aa25.98■■□□□ 1.75
SF3B2-215ENST00000534307 PRDM2Q13029 1718 aa25.89■■□□□ 1.74
SF3B2-215ENST00000534307 OSCARQ8IYS5 282 aa25.84■■□□□ 1.73
SF3B2-215ENST00000534307 RIMBP3CA6NJZ7 1639 aa25.8■■□□□ 1.72
SF3B2-215ENST00000534307 RIMBP3BA6NNM3 1639 aa25.8■■□□□ 1.72
SF3B2-215ENST00000534307 RIMBP3Q9UFD9 1639 aa25.8■■□□□ 1.72
SF3B2-215ENST00000534307 URB2Q14146 1524 aaKnown RBP25.79■■□□□ 1.72
SF3B2-215ENST00000534307 ARHGEF11O15085 1522 aa25.61■■□□□ 1.69
SF3B2-215ENST00000534307 TOPBP1Q92547 1522 aa25.57■■□□□ 1.68
SF3B2-215ENST00000534307 ZNF608Q9ULD9 1512 aaPredicted RBP25.56■■□□□ 1.68
SF3B2-215ENST00000534307 ABCC8Q09428 1581 aa25.52■■□□□ 1.68
SF3B2-215ENST00000534307 DNMBPQ6XZF7 1577 aa25.51■■□□□ 1.67
SF3B2-215ENST00000534307 IFT140Q96RY7 1462 aa25.49■■□□□ 1.67
SF3B2-215ENST00000534307 EIF4G3O43432 1585 aaKnown RBP25.47■■□□□ 1.67
SF3B2-215ENST00000534307 CHD1O14646 1710 aa25.44■■□□□ 1.66
SF3B2-215ENST00000534307 SUPT5HO00267 1087 aaKnown RBP25.43■■□□□ 1.66
SF3B2-215ENST00000534307 TARBP1Q13395 1621 aaKnown RBP25.34■■□□□ 1.65
SF3B2-215ENST00000534307 POLA1P09884 1462 aaPredicted RBP25.33■■□□□ 1.65
SF3B2-215ENST00000534307 ARAP1Q96P48 1450 aa25.33■■□□□ 1.65
SF3B2-215ENST00000534307 CYB5RLQ6IPT4 315 aa25.29■■□□□ 1.64
SF3B2-215ENST00000534307 CUX1P39880 1505 aa25.27■■□□□ 1.64
SF3B2-215ENST00000534307 FGD5Q6ZNL6 1462 aa25.21■■□□□ 1.63
SF3B2-215ENST00000534307 RAD54L2Q9Y4B4 1467 aa25.21■■□□□ 1.63
SF3B2-215ENST00000534307 AQRO60306 1485 aaKnown RBP eCLIP25.2■■□□□ 1.62
SF3B2-215ENST00000534307 SOGA1O94964 1423 aa25.18■■□□□ 1.62
SF3B2-215ENST00000534307 TRHP20396 242 aaPredicted RBP25.16■■□□□ 1.62
SF3B2-215ENST00000534307 WDR97A6NE52 1622 aa25.12■■□□□ 1.61
SF3B2-215ENST00000534307 TDRD9Q8NDG6 1382 aaKnown RBP25.08■■□□□ 1.61
SF3B2-215ENST00000534307 CLASP1Q7Z460 1538 aa25.06■■□□□ 1.6
SF3B2-215ENST00000534307 FBLN2P98095 1184 aa25.02■■□□□ 1.6
SF3B2-215ENST00000534307 BIVM-ERCC5R4GMW8 1640 aa24.97■■□□□ 1.59
SF3B2-215ENST00000534307 SNAPC4Q5SXM2 1469 aa24.97■■□□□ 1.59
SF3B2-215ENST00000534307 ABCA10Q8WWZ4 1543 aa24.96■■□□□ 1.59
SF3B2-215ENST00000534307 TOP2BQ02880 1626 aa24.96■■□□□ 1.59
SF3B2-215ENST00000534307 WRNQ14191 1432 aaPredicted RBP eCLIP24.95■■□□□ 1.58
SF3B2-215ENST00000534307 SYNJ1O43426 1573 aa24.94■■□□□ 1.58
SF3B2-215ENST00000534307 GRIN2BQ13224 1484 aa24.94■■□□□ 1.58
SF3B2-215ENST00000534307 MAGI1Q96QZ7 1491 aaPredicted RBP24.92■■□□□ 1.58
SF3B2-215ENST00000534307 ABCA5Q8WWZ7 1642 aa24.92■■□□□ 1.58
SF3B2-215ENST00000534307 GAPVD1Q14C86 1478 aa24.89■■□□□ 1.58
SF3B2-215ENST00000534307 PBRM1Q86U86 1689 aa24.89■■□□□ 1.58
SF3B2-215ENST00000534307 AEBP2Q6ZN18 517 aaPredicted RBP24.84■■□□□ 1.57
SF3B2-215ENST00000534307 SYNJ2O15056 1496 aa24.83■■□□□ 1.57
SF3B2-215ENST00000534307 CHMP7Q8WUX9 453 aaPredicted RBP24.77■■□□□ 1.56
SF3B2-215ENST00000534307 ADAMTS12P58397 1594 aa24.69■■□□□ 1.54
SF3B2-215ENST00000534307 ERICH3Q5RHP9 1530 aa24.66■■□□□ 1.54
SF3B2-215ENST00000534307 ERCC6L2Q5T890 1561 aa24.63■■□□□ 1.53
SF3B2-215ENST00000534307 GRIN2AQ12879 1464 aa24.63■■□□□ 1.53
SF3B2-215ENST00000534307 FHAD1B1AJZ9 1412 aa24.6■■□□□ 1.53
SF3B2-215ENST00000534307 NUP160Q12769 1436 aa24.56■■□□□ 1.52
SF3B2-215ENST00000534307 KIF13AQ9H1H9 1805 aa24.56■■□□□ 1.52
SF3B2-215ENST00000534307 CEP170Q5SW79 1584 aa24.54■■□□□ 1.52
SF3B2-215ENST00000534307 SHROOM2Q13796 1616 aa24.49■■□□□ 1.51
SF3B2-215ENST00000534307 KIF27Q86VH2 1401 aa24.44■■□□□ 1.5
SF3B2-215ENST00000534307 IGF1RP08069 1367 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms