RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 NISCHQ9Y2I1 1504 aa23.98■■□□□ 1.43
SSBP3-215ENST00000533946 CCDC180Q9P1Z9 1646 aa21.29■■□□□ 1
SSBP3-215ENST00000533946 ABCC9O60706 1549 aa21.28■■□□□ 1
SSBP3-215ENST00000533946 DCAF8L2P0C7V8 631 aa20.23■□□□□ 0.83
SSBP3-215ENST00000533946 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
SSBP3-215ENST00000533946 NACADO15069 1562 aa20.08■□□□□ 0.8
SSBP3-215ENST00000533946 UNC13AQ9UPW8 1703 aa19.91■□□□□ 0.78
SSBP3-215ENST00000533946 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
SSBP3-215ENST00000533946 DNAJC5BQ9UF47 199 aa19.91■□□□□ 0.78
SSBP3-215ENST00000533946 ZCCHC6Q5VYS8 1495 aaKnown RBP19.91■□□□□ 0.78
SSBP3-215ENST00000533946 MYO15BQ96JP2 1530 aa19.81■□□□□ 0.76
SSBP3-215ENST00000533946 BICRAQ9NZM4 1560 aa19.76■□□□□ 0.75
SSBP3-215ENST00000533946 DCAF1Q9Y4B6 1507 aa19.69■□□□□ 0.74
SSBP3-215ENST00000533946 SCRIBQ14160 1630 aa19.6■□□□□ 0.73
SSBP3-215ENST00000533946 CC2D2AQ9P2K1 1620 aa19.18■□□□□ 0.66
SSBP3-215ENST00000533946 SHROOM4Q9ULL8 1493 aa19.17■□□□□ 0.66
SSBP3-215ENST00000533946 EIF4G1Q04637 1599 aaKnown RBP19.17■□□□□ 0.66
SSBP3-215ENST00000533946 CECR2Q9BXF3 1484 aa19.06■□□□□ 0.64
SSBP3-215ENST00000533946 SMARCA4P51532 1647 aa18.66■□□□□ 0.58
SSBP3-215ENST00000533946 ATAD2BQ9ULI0 1458 aa18.63■□□□□ 0.57
SSBP3-215ENST00000533946 NCAPD3P42695 1498 aa18.58■□□□□ 0.57
SSBP3-215ENST00000533946 MROH2BQ7Z745 1585 aa18.58■□□□□ 0.56
SSBP3-215ENST00000533946 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
SSBP3-215ENST00000533946 SMARCA2P51531 1590 aa18.47■□□□□ 0.55
SSBP3-215ENST00000533946 HMGXB3Q12766 1538 aa18.43■□□□□ 0.54
SSBP3-215ENST00000533946 NESP48681 1621 aa18.41■□□□□ 0.54
SSBP3-215ENST00000533946 BAZ1BQ9UIG0 1483 aaKnown RBP18.4■□□□□ 0.54
SSBP3-215ENST00000533946 PEG3Q9GZU2 1588 aa18.4■□□□□ 0.54
SSBP3-215ENST00000533946 WIZO95785 1651 aa18.38■□□□□ 0.53
SSBP3-215ENST00000533946 RSF1Q96T23 1441 aaPredicted RBP18.23■□□□□ 0.51
SSBP3-215ENST00000533946 ERCC6Q03468 1493 aa18.21■□□□□ 0.51
SSBP3-215ENST00000533946 KIF21AQ7Z4S6 1674 aa18.12■□□□□ 0.49
SSBP3-215ENST00000533946 LAMC3Q9Y6N6 1575 aa18.08■□□□□ 0.49
SSBP3-215ENST00000533946 THOC2Q8NI27 1593 aaKnown RBP18.06■□□□□ 0.48
SSBP3-215ENST00000533946 CADPSQ9ULU8 1353 aa18.04■□□□□ 0.48
SSBP3-215ENST00000533946 CUX2O14529 1486 aa18.03■□□□□ 0.48
SSBP3-215ENST00000533946 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
SSBP3-215ENST00000533946 PDS5BQ9NTI5 1447 aa17.95■□□□□ 0.46
SSBP3-215ENST00000533946 CCDC88BA6NC98 1476 aa17.91■□□□□ 0.46
SSBP3-215ENST00000533946 CFTRP13569 1480 aa17.89■□□□□ 0.45
SSBP3-215ENST00000533946 DNAJC5Q9H3Z4 198 aa17.89■□□□□ 0.45
SSBP3-215ENST00000533946 FANCD2Q9BXW9 1451 aa17.86■□□□□ 0.45
SSBP3-215ENST00000533946 MRC2Q9UBG0 1479 aa17.85■□□□□ 0.45
SSBP3-215ENST00000533946 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
SSBP3-215ENST00000533946 WDR62O43379 1518 aa17.81■□□□□ 0.44
SSBP3-215ENST00000533946 URB2Q14146 1524 aaKnown RBP17.78■□□□□ 0.44
SSBP3-215ENST00000533946 PRDM2Q13029 1718 aa17.7■□□□□ 0.42
SSBP3-215ENST00000533946 SUPT5HO00267 1087 aaKnown RBP17.68■□□□□ 0.42
SSBP3-215ENST00000533946 TOPBP1Q92547 1522 aa17.57■□□□□ 0.4
SSBP3-215ENST00000533946 ZNF608Q9ULD9 1512 aaPredicted RBP17.57■□□□□ 0.4
SSBP3-215ENST00000533946 DNMBPQ6XZF7 1577 aa17.48■□□□□ 0.39
SSBP3-215ENST00000533946 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
SSBP3-215ENST00000533946 IFT140Q96RY7 1462 aa17.43■□□□□ 0.38
SSBP3-215ENST00000533946 TARBP1Q13395 1621 aaKnown RBP17.43■□□□□ 0.38
SSBP3-215ENST00000533946 CUX1P39880 1505 aa17.42■□□□□ 0.38
SSBP3-215ENST00000533946 POLA1P09884 1462 aaPredicted RBP17.42■□□□□ 0.38
SSBP3-215ENST00000533946 AQRO60306 1485 aaKnown RBP eCLIP17.41■□□□□ 0.381e-7■■■■■ 27.3
SSBP3-215ENST00000533946 EIF4G3O43432 1585 aaKnown RBP17.38■□□□□ 0.37
SSBP3-215ENST00000533946 ABCC8Q09428 1581 aa17.36■□□□□ 0.37
SSBP3-215ENST00000533946 FGD5Q6ZNL6 1462 aa17.35■□□□□ 0.37
SSBP3-215ENST00000533946 TDRD9Q8NDG6 1382 aaKnown RBP17.34■□□□□ 0.37
SSBP3-215ENST00000533946 SOGA1O94964 1423 aa17.31■□□□□ 0.36
SSBP3-215ENST00000533946 OSCARQ8IYS5 282 aa17.31■□□□□ 0.36
SSBP3-215ENST00000533946 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
SSBP3-215ENST00000533946 CHD1O14646 1710 aa17.24■□□□□ 0.35
SSBP3-215ENST00000533946 WDR97A6NE52 1622 aa17.21■□□□□ 0.35
SSBP3-215ENST00000533946 SYNJ1O43426 1573 aa17.21■□□□□ 0.35
SSBP3-215ENST00000533946 FBLN2P98095 1184 aa17.2■□□□□ 0.34
SSBP3-215ENST00000533946 SNAPC4Q5SXM2 1469 aa17.18■□□□□ 0.34
SSBP3-215ENST00000533946 RIMBP3CA6NJZ7 1639 aa17.16■□□□□ 0.34
SSBP3-215ENST00000533946 RIMBP3BA6NNM3 1639 aa17.16■□□□□ 0.34
SSBP3-215ENST00000533946 RIMBP3Q9UFD9 1639 aa17.16■□□□□ 0.34
SSBP3-215ENST00000533946 BIVM-ERCC5R4GMW8 1640 aa17.12■□□□□ 0.33
SSBP3-215ENST00000533946 WRNQ14191 1432 aaPredicted RBP eCLIP17.12■□□□□ 0.337e-6■■■■■ 31.3
SSBP3-215ENST00000533946 ABCA10Q8WWZ4 1543 aa17.11■□□□□ 0.33
SSBP3-215ENST00000533946 TOP2BQ02880 1626 aa17.1■□□□□ 0.33
SSBP3-215ENST00000533946 PBRM1Q86U86 1689 aa17.1■□□□□ 0.33
SSBP3-215ENST00000533946 GAPVD1Q14C86 1478 aa17.1■□□□□ 0.33
SSBP3-215ENST00000533946 ARHGEF11O15085 1522 aa17.1■□□□□ 0.33
SSBP3-215ENST00000533946 ABCA5Q8WWZ7 1642 aa17.1■□□□□ 0.33
SSBP3-215ENST00000533946 GRIN2BQ13224 1484 aa17.08■□□□□ 0.32
SSBP3-215ENST00000533946 CHMP7Q8WUX9 453 aaPredicted RBP17.03■□□□□ 0.32
SSBP3-215ENST00000533946 MAGI1Q96QZ7 1491 aaPredicted RBP17.03■□□□□ 0.32
SSBP3-215ENST00000533946 CLASP1Q7Z460 1538 aa17.01■□□□□ 0.31
SSBP3-215ENST00000533946 SYNJ2O15056 1496 aa17■□□□□ 0.31
SSBP3-215ENST00000533946 CYB5RLQ6IPT4 315 aa17■□□□□ 0.31
SSBP3-215ENST00000533946 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
SSBP3-215ENST00000533946 ADAMTS12P58397 1594 aa16.94■□□□□ 0.3
SSBP3-215ENST00000533946 ERCC6L2Q5T890 1561 aa16.93■□□□□ 0.3
SSBP3-215ENST00000533946 CEP170Q5SW79 1584 aa16.91■□□□□ 0.3
SSBP3-215ENST00000533946 GRIN2AQ12879 1464 aa16.91■□□□□ 0.3
SSBP3-215ENST00000533946 FHAD1B1AJZ9 1412 aa16.85■□□□□ 0.29
SSBP3-215ENST00000533946 ERICH3Q5RHP9 1530 aa16.85■□□□□ 0.29
SSBP3-215ENST00000533946 NUP160Q12769 1436 aa16.84■□□□□ 0.29
SSBP3-215ENST00000533946 IGF1RP08069 1367 aa16.81■□□□□ 0.28
SSBP3-215ENST00000533946 RUSC2Q8N2Y8 1516 aa16.79■□□□□ 0.28
SSBP3-215ENST00000533946 SHROOM2Q13796 1616 aa16.74■□□□□ 0.27
SSBP3-215ENST00000533946 KIF27Q86VH2 1401 aa16.72■□□□□ 0.27
SSBP3-215ENST00000533946 JPH4Q96JJ6 628 aa16.69■□□□□ 0.26
SSBP3-215ENST00000533946 PRG4Q92954 1404 aaPredicted RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms