RNA–Protein interactions for RNA: ENST00000533789.5

HIF3A-216, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-216ENST00000533789 NISCHQ9Y2I1 1504 aa46.07■■■■■ 4.97
HIF3A-216ENST00000533789 CCDC180Q9P1Z9 1646 aa41.44■■■■■ 4.22
HIF3A-216ENST00000533789 ABCC9O60706 1549 aa40.9■■■■■ 4.14
HIF3A-216ENST00000533789 RB1CC1Q8TDY2 1594 aa39.19■■■■□ 3.86
HIF3A-216ENST00000533789 NACADO15069 1562 aa38.97■■■■□ 3.83
HIF3A-216ENST00000533789 MYO15BQ96JP2 1530 aa38.53■■■■□ 3.76
HIF3A-216ENST00000533789 UNC13AQ9UPW8 1703 aa38.52■■■■□ 3.76
HIF3A-216ENST00000533789 DCAF8L2P0C7V8 631 aa38.51■■■■□ 3.76
HIF3A-216ENST00000533789 ZCCHC6Q5VYS8 1495 aaKnown RBP38.28■■■■□ 3.72
HIF3A-216ENST00000533789 DCAF1Q9Y4B6 1507 aa38.13■■■■□ 3.69
HIF3A-216ENST00000533789 BICRAQ9NZM4 1560 aa38.03■■■■□ 3.68
HIF3A-216ENST00000533789 PABPN1Q86U42 306 aaKnown RBP eCLIP37.99■■■■□ 3.67
HIF3A-216ENST00000533789 DNAJC5BQ9UF47 199 aa37.99■■■■□ 3.67
HIF3A-216ENST00000533789 SCRIBQ14160 1630 aa37.64■■■■□ 3.62
HIF3A-216ENST00000533789 SHROOM4Q9ULL8 1493 aa37.58■■■■□ 3.61
HIF3A-216ENST00000533789 CC2D2AQ9P2K1 1620 aa37.08■■■■□ 3.53
HIF3A-216ENST00000533789 EIF4G1Q04637 1599 aaKnown RBP37.06■■■■□ 3.52
HIF3A-216ENST00000533789 CECR2Q9BXF3 1484 aa36.83■■■■□ 3.49
HIF3A-216ENST00000533789 SMARCA4P51532 1647 aa35.97■■■■□ 3.35
HIF3A-216ENST00000533789 NCAPD3P42695 1498 aa35.87■■■■□ 3.33
HIF3A-216ENST00000533789 SMARCA2P51531 1590 aa35.81■■■■□ 3.32
HIF3A-216ENST00000533789 ATAD2BQ9ULI0 1458 aa35.81■■■■□ 3.32
HIF3A-216ENST00000533789 BAZ1AQ9NRL2 1556 aaPredicted RBP35.79■■■■□ 3.32
HIF3A-216ENST00000533789 HMGXB3Q12766 1538 aa35.76■■■■□ 3.31
HIF3A-216ENST00000533789 PEG3Q9GZU2 1588 aa35.63■■■■□ 3.29
HIF3A-216ENST00000533789 BAZ1BQ9UIG0 1483 aaKnown RBP35.51■■■■□ 3.28
HIF3A-216ENST00000533789 MROH2BQ7Z745 1585 aa35.48■■■■□ 3.27
HIF3A-216ENST00000533789 ERCC6Q03468 1493 aa35.32■■■■□ 3.24
HIF3A-216ENST00000533789 NESP48681 1621 aa35.24■■■■□ 3.23
HIF3A-216ENST00000533789 CUX2O14529 1486 aa35.22■■■■□ 3.23
HIF3A-216ENST00000533789 WIZO95785 1651 aa35.16■■■■□ 3.22
HIF3A-216ENST00000533789 LAMC3Q9Y6N6 1575 aa35.14■■■■□ 3.22
HIF3A-216ENST00000533789 KIF21AQ7Z4S6 1674 aa35■■■■□ 3.19
HIF3A-216ENST00000533789 THOC2Q8NI27 1593 aaKnown RBP34.98■■■■□ 3.19
HIF3A-216ENST00000533789 PDS5BQ9NTI5 1447 aa34.8■■■■□ 3.16
HIF3A-216ENST00000533789 RSF1Q96T23 1441 aaPredicted RBP34.79■■■■□ 3.16
HIF3A-216ENST00000533789 CADPSQ9ULU8 1353 aa34.75■■■■□ 3.15
HIF3A-216ENST00000533789 TOP2AP11388 1531 aaKnown RBP34.72■■■■□ 3.15
HIF3A-216ENST00000533789 DNAJC5Q9H3Z4 198 aa34.71■■■■□ 3.15
HIF3A-216ENST00000533789 MRC2Q9UBG0 1479 aa34.54■■■■□ 3.12
HIF3A-216ENST00000533789 PRDM2Q13029 1718 aa34.51■■■■□ 3.12
HIF3A-216ENST00000533789 WDR62O43379 1518 aa34.5■■■■□ 3.11
HIF3A-216ENST00000533789 CFTRP13569 1480 aa34.47■■■■□ 3.11
HIF3A-216ENST00000533789 CEP164Q9UPV0 1460 aa34.46■■■■□ 3.11
HIF3A-216ENST00000533789 FANCD2Q9BXW9 1451 aa34.42■■■■□ 3.1
HIF3A-216ENST00000533789 CCDC88BA6NC98 1476 aa34.21■■■■□ 3.07
HIF3A-216ENST00000533789 URB2Q14146 1524 aaKnown RBP34.14■■■■□ 3.06
HIF3A-216ENST00000533789 TOPBP1Q92547 1522 aa33.83■■■■□ 3.01
HIF3A-216ENST00000533789 DNMBPQ6XZF7 1577 aa33.79■■■■□ 3
HIF3A-216ENST00000533789 ABCC8Q09428 1581 aa33.77■■■■□ 3
HIF3A-216ENST00000533789 IFT140Q96RY7 1462 aa33.75■■■□□ 2.99
HIF3A-216ENST00000533789 ZNF608Q9ULD9 1512 aaPredicted RBP33.63■■■□□ 2.97
HIF3A-216ENST00000533789 EIF4G3O43432 1585 aaKnown RBP33.61■■■□□ 2.97
HIF3A-216ENST00000533789 TARBP1Q13395 1621 aaKnown RBP33.58■■■□□ 2.97
HIF3A-216ENST00000533789 POLA1P09884 1462 aaPredicted RBP33.49■■■□□ 2.95
HIF3A-216ENST00000533789 OSCARQ8IYS5 282 aa33.48■■■□□ 2.95
HIF3A-216ENST00000533789 CHD1O14646 1710 aa33.39■■■□□ 2.94
HIF3A-216ENST00000533789 CUX1P39880 1505 aa33.34■■■□□ 2.93
HIF3A-216ENST00000533789 AQRO60306 1485 aaKnown RBP eCLIP33.32■■■□□ 2.92
HIF3A-216ENST00000533789 WDR97A6NE52 1622 aa33.32■■■□□ 2.92
HIF3A-216ENST00000533789 FGD5Q6ZNL6 1462 aa33.31■■■□□ 2.92
HIF3A-216ENST00000533789 SUPT5HO00267 1087 aaKnown RBP33.31■■■□□ 2.92
HIF3A-216ENST00000533789 RAD54L2Q9Y4B4 1467 aa33.3■■■□□ 2.92
HIF3A-216ENST00000533789 TRIM41Q8WV44 630 aa33.27■■■□□ 2.92
HIF3A-216ENST00000533789 RIMBP3CA6NJZ7 1639 aa33.25■■■□□ 2.91
HIF3A-216ENST00000533789 RIMBP3BA6NNM3 1639 aa33.25■■■□□ 2.91
HIF3A-216ENST00000533789 RIMBP3Q9UFD9 1639 aa33.25■■■□□ 2.91
HIF3A-216ENST00000533789 SOGA1O94964 1423 aa33.25■■■□□ 2.91
HIF3A-216ENST00000533789 TDRD9Q8NDG6 1382 aaKnown RBP33.12■■■□□ 2.89
HIF3A-216ENST00000533789 PBRM1Q86U86 1689 aa33.12■■■□□ 2.89
HIF3A-216ENST00000533789 ARHGEF11O15085 1522 aa33.11■■■□□ 2.89
HIF3A-216ENST00000533789 SNAPC4Q5SXM2 1469 aa33.06■■■□□ 2.88
HIF3A-216ENST00000533789 BIVM-ERCC5R4GMW8 1640 aa33.02■■■□□ 2.88
HIF3A-216ENST00000533789 MAGI1Q96QZ7 1491 aaPredicted RBP33.02■■■□□ 2.88
HIF3A-216ENST00000533789 ABCA5Q8WWZ7 1642 aa33■■■□□ 2.87
HIF3A-216ENST00000533789 GRIN2BQ13224 1484 aa32.99■■■□□ 2.87
HIF3A-216ENST00000533789 ABCA10Q8WWZ4 1543 aa32.97■■■□□ 2.87
HIF3A-216ENST00000533789 TOP2BQ02880 1626 aa32.95■■■□□ 2.87
HIF3A-216ENST00000533789 FBLN2P98095 1184 aa32.95■■■□□ 2.87
HIF3A-216ENST00000533789 GAPVD1Q14C86 1478 aa32.92■■■□□ 2.86
HIF3A-216ENST00000533789 SYNJ1O43426 1573 aa32.91■■■□□ 2.86
HIF3A-216ENST00000533789 CLASP1Q7Z460 1538 aa32.9■■■□□ 2.86
HIF3A-216ENST00000533789 SYNJ2O15056 1496 aa32.88■■■□□ 2.85
HIF3A-216ENST00000533789 WRNQ14191 1432 aaPredicted RBP eCLIP32.84■■■□□ 2.85
HIF3A-216ENST00000533789 CHMP7Q8WUX9 453 aaPredicted RBP32.78■■■□□ 2.84
HIF3A-216ENST00000533789 ARAP1Q96P48 1450 aa32.78■■■□□ 2.84
HIF3A-216ENST00000533789 ADAMTS12P58397 1594 aa32.71■■■□□ 2.83
HIF3A-216ENST00000533789 CYB5RLQ6IPT4 315 aa32.65■■■□□ 2.82
HIF3A-216ENST00000533789 GRIN2AQ12879 1464 aa32.61■■■□□ 2.81
HIF3A-216ENST00000533789 ERICH3Q5RHP9 1530 aa32.59■■■□□ 2.81
HIF3A-216ENST00000533789 CEP170Q5SW79 1584 aa32.53■■■□□ 2.8
HIF3A-216ENST00000533789 FHAD1B1AJZ9 1412 aa32.5■■■□□ 2.79
HIF3A-216ENST00000533789 NUP160Q12769 1436 aa32.47■■■□□ 2.79
HIF3A-216ENST00000533789 SHROOM2Q13796 1616 aa32.43■■■□□ 2.78
HIF3A-216ENST00000533789 ERCC6L2Q5T890 1561 aa32.36■■■□□ 2.77
HIF3A-216ENST00000533789 CUL7Q14999 1698 aa32.27■■■□□ 2.76
HIF3A-216ENST00000533789 RUSC2Q8N2Y8 1516 aa32.26■■■□□ 2.75
HIF3A-216ENST00000533789 TRHP20396 242 aaPredicted RBP32.2■■■□□ 2.75
HIF3A-216ENST00000533789 KIF27Q86VH2 1401 aa32.18■■■□□ 2.74
HIF3A-216ENST00000533789 PRG4Q92954 1404 aaPredicted RBP32.08■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms