RNA–Protein interactions for RNA: ENST00000533752.1

TSKU-204, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

TSL 4

Gene TSKU, Length 643 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-204ENST00000533752 NISCHQ9Y2I1 1504 aa38.54■■■■□ 3.76
TSKU-204ENST00000533752 CCDC180Q9P1Z9 1646 aa34.35■■■■□ 3.09
TSKU-204ENST00000533752 ABCC9O60706 1549 aa33.57■■■□□ 2.96
TSKU-204ENST00000533752 RB1CC1Q8TDY2 1594 aa32.35■■■□□ 2.77
TSKU-204ENST00000533752 NACADO15069 1562 aa32.31■■■□□ 2.76
TSKU-204ENST00000533752 MYO15BQ96JP2 1530 aa32.14■■■□□ 2.74
TSKU-204ENST00000533752 DCAF8L2P0C7V8 631 aa32.13■■■□□ 2.73
TSKU-204ENST00000533752 ZCCHC6Q5VYS8 1495 aaKnown RBP32.13■■■□□ 2.73
TSKU-204ENST00000533752 DCAF1Q9Y4B6 1507 aa31.95■■■□□ 2.71
TSKU-204ENST00000533752 UNC13AQ9UPW8 1703 aa31.51■■■□□ 2.63
TSKU-204ENST00000533752 PABPN1Q86U42 306 aaKnown RBP eCLIP31.31■■■□□ 2.6
TSKU-204ENST00000533752 BICRAQ9NZM4 1560 aa31.3■■■□□ 2.6
TSKU-204ENST00000533752 SCRIBQ14160 1630 aa31.27■■■□□ 2.6
TSKU-204ENST00000533752 SHROOM4Q9ULL8 1493 aa31.14■■■□□ 2.57
TSKU-204ENST00000533752 DNAJC5BQ9UF47 199 aa30.77■■■□□ 2.52
TSKU-204ENST00000533752 EIF4G1Q04637 1599 aaKnown RBP30.52■■■□□ 2.48
TSKU-204ENST00000533752 CC2D2AQ9P2K1 1620 aa30.38■■■□□ 2.45
TSKU-204ENST00000533752 CECR2Q9BXF3 1484 aa30.21■■■□□ 2.43
TSKU-204ENST00000533752 SMARCA4P51532 1647 aa29.93■■■□□ 2.38
TSKU-204ENST00000533752 BAZ1AQ9NRL2 1556 aaPredicted RBP29.92■■■□□ 2.38
TSKU-204ENST00000533752 SMARCA2P51531 1590 aa29.79■■■□□ 2.36
TSKU-204ENST00000533752 NCAPD3P42695 1498 aa29.79■■■□□ 2.36
TSKU-204ENST00000533752 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
TSKU-204ENST00000533752 PEG3Q9GZU2 1588 aa29.68■■■□□ 2.34
TSKU-204ENST00000533752 HMGXB3Q12766 1538 aa29.67■■■□□ 2.34
TSKU-204ENST00000533752 MROH2BQ7Z745 1585 aa29.66■■■□□ 2.34
TSKU-204ENST00000533752 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
TSKU-204ENST00000533752 WIZO95785 1651 aa29.33■■■□□ 2.29
TSKU-204ENST00000533752 RSF1Q96T23 1441 aaPredicted RBP29.32■■■□□ 2.28
TSKU-204ENST00000533752 TOP2AP11388 1531 aaKnown RBP29.1■■■□□ 2.25
TSKU-204ENST00000533752 LAMC3Q9Y6N6 1575 aa29.03■■■□□ 2.24
TSKU-204ENST00000533752 ERCC6Q03468 1493 aa29.01■■■□□ 2.23
TSKU-204ENST00000533752 NESP48681 1621 aa29.01■■■□□ 2.23
TSKU-204ENST00000533752 CADPSQ9ULU8 1353 aa28.9■■■□□ 2.22
TSKU-204ENST00000533752 PDS5BQ9NTI5 1447 aa28.85■■■□□ 2.21
TSKU-204ENST00000533752 CUX2O14529 1486 aa28.75■■■□□ 2.19
TSKU-204ENST00000533752 CFTRP13569 1480 aa28.73■■■□□ 2.19
TSKU-204ENST00000533752 CCDC88BA6NC98 1476 aa28.7■■■□□ 2.18
TSKU-204ENST00000533752 KIF21AQ7Z4S6 1674 aa28.69■■■□□ 2.18
TSKU-204ENST00000533752 THOC2Q8NI27 1593 aaKnown RBP28.65■■■□□ 2.18
TSKU-204ENST00000533752 FANCD2Q9BXW9 1451 aa28.58■■■□□ 2.17
TSKU-204ENST00000533752 CEP164Q9UPV0 1460 aa28.57■■■□□ 2.16
TSKU-204ENST00000533752 MRC2Q9UBG0 1479 aa28.54■■■□□ 2.16
TSKU-204ENST00000533752 PRDM2Q13029 1718 aa28.52■■■□□ 2.16
TSKU-204ENST00000533752 SUPT5HO00267 1087 aaKnown RBP28.47■■■□□ 2.15
TSKU-204ENST00000533752 WDR62O43379 1518 aa28.45■■■□□ 2.15
TSKU-204ENST00000533752 URB2Q14146 1524 aaKnown RBP28.27■■■□□ 2.12
TSKU-204ENST00000533752 ABCC8Q09428 1581 aa28.16■■■□□ 2.1
TSKU-204ENST00000533752 TOPBP1Q92547 1522 aa28.11■■■□□ 2.09
TSKU-204ENST00000533752 DNMBPQ6XZF7 1577 aa28.09■■■□□ 2.09
TSKU-204ENST00000533752 IFT140Q96RY7 1462 aa27.98■■■□□ 2.07
TSKU-204ENST00000533752 POLA1P09884 1462 aaPredicted RBP27.86■■■□□ 2.05
TSKU-204ENST00000533752 CUX1P39880 1505 aa27.85■■■□□ 2.05
TSKU-204ENST00000533752 DNAJC5Q9H3Z4 198 aa27.84■■■□□ 2.05
TSKU-204ENST00000533752 TARBP1Q13395 1621 aaKnown RBP27.79■■■□□ 2.04
TSKU-204ENST00000533752 FGD5Q6ZNL6 1462 aa27.78■■■□□ 2.04
TSKU-204ENST00000533752 ZNF608Q9ULD9 1512 aaPredicted RBP27.77■■■□□ 2.04
TSKU-204ENST00000533752 SOGA1O94964 1423 aa27.74■■■□□ 2.03
TSKU-204ENST00000533752 EIF4G3O43432 1585 aaKnown RBP27.72■■■□□ 2.03
TSKU-204ENST00000533752 RAD54L2Q9Y4B4 1467 aa27.7■■■□□ 2.02
TSKU-204ENST00000533752 WRNQ14191 1432 aaPredicted RBP eCLIP27.68■■■□□ 2.02
TSKU-204ENST00000533752 WDR97A6NE52 1622 aa27.67■■■□□ 2.02
TSKU-204ENST00000533752 TOP2BQ02880 1626 aa27.63■■■□□ 2.01
TSKU-204ENST00000533752 BIVM-ERCC5R4GMW8 1640 aa27.63■■■□□ 2.01
TSKU-204ENST00000533752 AQRO60306 1485 aaKnown RBP eCLIP27.61■■■□□ 2.01
TSKU-204ENST00000533752 SYNJ1O43426 1573 aa27.58■■■□□ 2.01
TSKU-204ENST00000533752 TDRD9Q8NDG6 1382 aaKnown RBP27.55■■■□□ 2
TSKU-204ENST00000533752 ABCA10Q8WWZ4 1543 aa27.54■■■□□ 2
TSKU-204ENST00000533752 OSCARQ8IYS5 282 aa27.48■■□□□ 1.99
TSKU-204ENST00000533752 GRIN2BQ13224 1484 aa27.46■■□□□ 1.99
TSKU-204ENST00000533752 GAPVD1Q14C86 1478 aa27.44■■□□□ 1.98
TSKU-204ENST00000533752 ABCA5Q8WWZ7 1642 aa27.42■■□□□ 1.98
TSKU-204ENST00000533752 MAGI1Q96QZ7 1491 aaPredicted RBP27.42■■□□□ 1.98
TSKU-204ENST00000533752 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
TSKU-204ENST00000533752 PBRM1Q86U86 1689 aa27.36■■□□□ 1.97
TSKU-204ENST00000533752 CHD1O14646 1710 aa27.34■■□□□ 1.97
TSKU-204ENST00000533752 FBLN2P98095 1184 aa27.29■■□□□ 1.96
TSKU-204ENST00000533752 SYNJ2O15056 1496 aa27.29■■□□□ 1.96
TSKU-204ENST00000533752 CHMP7Q8WUX9 453 aaPredicted RBP27.25■■□□□ 1.95
TSKU-204ENST00000533752 ERICH3Q5RHP9 1530 aa27.23■■□□□ 1.95
TSKU-204ENST00000533752 ADAMTS12P58397 1594 aa27.18■■□□□ 1.94
TSKU-204ENST00000533752 FHAD1B1AJZ9 1412 aa27.14■■□□□ 1.93
TSKU-204ENST00000533752 KIF27Q86VH2 1401 aa27.14■■□□□ 1.93
TSKU-204ENST00000533752 GRIN2AQ12879 1464 aa27.1■■□□□ 1.93
TSKU-204ENST00000533752 CLASP1Q7Z460 1538 aa27.09■■□□□ 1.93
TSKU-204ENST00000533752 ARHGEF11O15085 1522 aa27.06■■□□□ 1.92
TSKU-204ENST00000533752 RIMBP3CA6NJZ7 1639 aa27.04■■□□□ 1.92
TSKU-204ENST00000533752 RIMBP3BA6NNM3 1639 aa27.04■■□□□ 1.92
TSKU-204ENST00000533752 RIMBP3Q9UFD9 1639 aa27.04■■□□□ 1.92
TSKU-204ENST00000533752 NUP160Q12769 1436 aa26.99■■□□□ 1.91
TSKU-204ENST00000533752 CUL7Q14999 1698 aa26.98■■□□□ 1.91
TSKU-204ENST00000533752 IGF1RP08069 1367 aa26.97■■□□□ 1.91
TSKU-204ENST00000533752 TRIM41Q8WV44 630 aa26.95■■□□□ 1.9
TSKU-204ENST00000533752 CEP170Q5SW79 1584 aa26.93■■□□□ 1.9
TSKU-204ENST00000533752 CARMIL1Q5VZK9 1371 aa26.83■■□□□ 1.88
TSKU-204ENST00000533752 ARAP1Q96P48 1450 aa26.82■■□□□ 1.88
TSKU-204ENST00000533752 RUSC2Q8N2Y8 1516 aa26.78■■□□□ 1.88
TSKU-204ENST00000533752 SHROOM2Q13796 1616 aa26.78■■□□□ 1.88
TSKU-204ENST00000533752 CYB5RLQ6IPT4 315 aa26.75■■□□□ 1.87
TSKU-204ENST00000533752 KIAA0586Q9BVV6 1533 aa26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms