RNA–Protein interactions for RNA: ENST00000533678.1

RDX-214, Transcript of radixin, humanhuman

TSL 4

Gene RDX, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDX-214ENST00000533678 NISCHQ9Y2I1 1504 aa39.99■■■■□ 3.99
RDX-214ENST00000533678 CCDC180Q9P1Z9 1646 aa35.67■■■■□ 3.3
RDX-214ENST00000533678 ABCC9O60706 1549 aa35.38■■■■□ 3.25
RDX-214ENST00000533678 RB1CC1Q8TDY2 1594 aa33.61■■■□□ 2.97
RDX-214ENST00000533678 NACADO15069 1562 aa33.55■■■□□ 2.96
RDX-214ENST00000533678 DCAF8L2P0C7V8 631 aa33.4■■■□□ 2.94
RDX-214ENST00000533678 DNAJC5BQ9UF47 199 aa33.39■■■□□ 2.94
RDX-214ENST00000533678 MYO15BQ96JP2 1530 aa33.35■■■□□ 2.93
RDX-214ENST00000533678 ZCCHC6Q5VYS8 1495 aaKnown RBP33.27■■■□□ 2.92
RDX-214ENST00000533678 DCAF1Q9Y4B6 1507 aa33.14■■■□□ 2.9
RDX-214ENST00000533678 UNC13AQ9UPW8 1703 aa32.83■■■□□ 2.85
RDX-214ENST00000533678 PABPN1Q86U42 306 aaKnown RBP eCLIP32.74■■■□□ 2.83
RDX-214ENST00000533678 BICRAQ9NZM4 1560 aa32.56■■■□□ 2.8
RDX-214ENST00000533678 SCRIBQ14160 1630 aa32.43■■■□□ 2.78
RDX-214ENST00000533678 SHROOM4Q9ULL8 1493 aa32.29■■■□□ 2.76
RDX-214ENST00000533678 CC2D2AQ9P2K1 1620 aa31.99■■■□□ 2.71
RDX-214ENST00000533678 CECR2Q9BXF3 1484 aa31.92■■■□□ 2.7
RDX-214ENST00000533678 EIF4G1Q04637 1599 aaKnown RBP31.83■■■□□ 2.69
RDX-214ENST00000533678 SMARCA4P51532 1647 aa31.06■■■□□ 2.56
RDX-214ENST00000533678 BAZ1AQ9NRL2 1556 aaPredicted RBP31.03■■■□□ 2.56
RDX-214ENST00000533678 DNAJC5Q9H3Z4 198 aa31■■■□□ 2.55
RDX-214ENST00000533678 NCAPD3P42695 1498 aa30.94■■■□□ 2.54
RDX-214ENST00000533678 SMARCA2P51531 1590 aa30.91■■■□□ 2.54
RDX-214ENST00000533678 ATAD2BQ9ULI0 1458 aa30.9■■■□□ 2.54
RDX-214ENST00000533678 PEG3Q9GZU2 1588 aa30.79■■■□□ 2.52
RDX-214ENST00000533678 HMGXB3Q12766 1538 aa30.78■■■□□ 2.52
RDX-214ENST00000533678 MROH2BQ7Z745 1585 aa30.77■■■□□ 2.52
RDX-214ENST00000533678 CUX2O14529 1486 aa30.72■■■□□ 2.51
RDX-214ENST00000533678 BAZ1BQ9UIG0 1483 aaKnown RBP30.65■■■□□ 2.5
RDX-214ENST00000533678 ERCC6Q03468 1493 aa30.63■■■□□ 2.49
RDX-214ENST00000533678 WIZO95785 1651 aa30.45■■■□□ 2.46
RDX-214ENST00000533678 RSF1Q96T23 1441 aaPredicted RBP30.39■■■□□ 2.46
RDX-214ENST00000533678 NESP48681 1621 aa30.25■■■□□ 2.43
RDX-214ENST00000533678 THOC2Q8NI27 1593 aaKnown RBP30.18■■■□□ 2.42
RDX-214ENST00000533678 LAMC3Q9Y6N6 1575 aa30.16■■■□□ 2.42
RDX-214ENST00000533678 TOP2AP11388 1531 aaKnown RBP30.15■■■□□ 2.42
RDX-214ENST00000533678 CADPSQ9ULU8 1353 aa30.02■■■□□ 2.4
RDX-214ENST00000533678 KIF21AQ7Z4S6 1674 aa29.97■■■□□ 2.39
RDX-214ENST00000533678 PDS5BQ9NTI5 1447 aa29.96■■■□□ 2.39
RDX-214ENST00000533678 CFTRP13569 1480 aa29.81■■■□□ 2.36
RDX-214ENST00000533678 CCDC88BA6NC98 1476 aa29.77■■■□□ 2.36
RDX-214ENST00000533678 PRDM2Q13029 1718 aa29.65■■■□□ 2.34
RDX-214ENST00000533678 FANCD2Q9BXW9 1451 aa29.65■■■□□ 2.34
RDX-214ENST00000533678 MRC2Q9UBG0 1479 aa29.65■■■□□ 2.34
RDX-214ENST00000533678 CEP164Q9UPV0 1460 aa29.64■■■□□ 2.34
RDX-214ENST00000533678 WDR62O43379 1518 aa29.63■■■□□ 2.33
RDX-214ENST00000533678 TRIM41Q8WV44 630 aa29.52■■■□□ 2.32
RDX-214ENST00000533678 SUPT5HO00267 1087 aaKnown RBP29.49■■■□□ 2.31
RDX-214ENST00000533678 URB2Q14146 1524 aaKnown RBP29.34■■■□□ 2.29
RDX-214ENST00000533678 ABCC8Q09428 1581 aa29.26■■■□□ 2.27
RDX-214ENST00000533678 TOPBP1Q92547 1522 aa29.16■■■□□ 2.26
RDX-214ENST00000533678 DNMBPQ6XZF7 1577 aa29.14■■■□□ 2.26
RDX-214ENST00000533678 OSCARQ8IYS5 282 aa29.05■■■□□ 2.24
RDX-214ENST00000533678 IFT140Q96RY7 1462 aa29.04■■■□□ 2.24
RDX-214ENST00000533678 RIMBP3CA6NJZ7 1639 aa28.94■■■□□ 2.22
RDX-214ENST00000533678 RIMBP3BA6NNM3 1639 aa28.94■■■□□ 2.22
RDX-214ENST00000533678 RIMBP3Q9UFD9 1639 aa28.94■■■□□ 2.22
RDX-214ENST00000533678 POLA1P09884 1462 aaPredicted RBP28.9■■■□□ 2.22
RDX-214ENST00000533678 CUX1P39880 1505 aa28.88■■■□□ 2.21
RDX-214ENST00000533678 TARBP1Q13395 1621 aaKnown RBP28.87■■■□□ 2.21
RDX-214ENST00000533678 ZNF608Q9ULD9 1512 aaPredicted RBP28.84■■■□□ 2.21
RDX-214ENST00000533678 FGD5Q6ZNL6 1462 aa28.81■■■□□ 2.2
RDX-214ENST00000533678 SOGA1O94964 1423 aa28.8■■■□□ 2.2
RDX-214ENST00000533678 ARHGEF11O15085 1522 aa28.79■■■□□ 2.2
RDX-214ENST00000533678 EIF4G3O43432 1585 aaKnown RBP28.77■■■□□ 2.2
RDX-214ENST00000533678 RAD54L2Q9Y4B4 1467 aa28.74■■■□□ 2.19
RDX-214ENST00000533678 WDR97A6NE52 1622 aa28.72■■■□□ 2.19
RDX-214ENST00000533678 AQRO60306 1485 aaKnown RBP eCLIP28.68■■■□□ 2.18
RDX-214ENST00000533678 WRNQ14191 1432 aaPredicted RBP eCLIP28.68■■■□□ 2.18
RDX-214ENST00000533678 BIVM-ERCC5R4GMW8 1640 aa28.65■■■□□ 2.18
RDX-214ENST00000533678 TOP2BQ02880 1626 aa28.65■■■□□ 2.18
RDX-214ENST00000533678 CHD1O14646 1710 aa28.62■■■□□ 2.17
RDX-214ENST00000533678 TDRD9Q8NDG6 1382 aaKnown RBP28.61■■■□□ 2.17
RDX-214ENST00000533678 SYNJ1O43426 1573 aa28.58■■■□□ 2.17
RDX-214ENST00000533678 ABCA10Q8WWZ4 1543 aa28.56■■■□□ 2.16
RDX-214ENST00000533678 GRIN2BQ13224 1484 aa28.49■■■□□ 2.15
RDX-214ENST00000533678 GAPVD1Q14C86 1478 aa28.46■■■□□ 2.15
RDX-214ENST00000533678 ARAP1Q96P48 1450 aa28.46■■■□□ 2.15
RDX-214ENST00000533678 ABCA5Q8WWZ7 1642 aa28.45■■■□□ 2.14
RDX-214ENST00000533678 MAGI1Q96QZ7 1491 aaPredicted RBP28.45■■■□□ 2.14
RDX-214ENST00000533678 PBRM1Q86U86 1689 aa28.43■■■□□ 2.14
RDX-214ENST00000533678 SNAPC4Q5SXM2 1469 aa28.43■■■□□ 2.14
RDX-214ENST00000533678 CYB5RLQ6IPT4 315 aa28.4■■■□□ 2.14
RDX-214ENST00000533678 FBLN2P98095 1184 aa28.37■■■□□ 2.13
RDX-214ENST00000533678 CHMP7Q8WUX9 453 aaPredicted RBP28.32■■■□□ 2.12
RDX-214ENST00000533678 SYNJ2O15056 1496 aa28.32■■■□□ 2.12
RDX-214ENST00000533678 TRHP20396 242 aaPredicted RBP28.26■■■□□ 2.11
RDX-214ENST00000533678 CLASP1Q7Z460 1538 aa28.26■■■□□ 2.11
RDX-214ENST00000533678 ERICH3Q5RHP9 1530 aa28.24■■■□□ 2.11
RDX-214ENST00000533678 ADAMTS12P58397 1594 aa28.17■■■□□ 2.1
RDX-214ENST00000533678 FHAD1B1AJZ9 1412 aa28.15■■■□□ 2.1
RDX-214ENST00000533678 KIF27Q86VH2 1401 aa28.11■■■□□ 2.09
RDX-214ENST00000533678 GRIN2AQ12879 1464 aa28.1■■■□□ 2.09
RDX-214ENST00000533678 NUP160Q12769 1436 aa28■■■□□ 2.07
RDX-214ENST00000533678 IGF1RP08069 1367 aa27.99■■■□□ 2.07
RDX-214ENST00000533678 CUL7Q14999 1698 aa27.97■■■□□ 2.07
RDX-214ENST00000533678 CEP170Q5SW79 1584 aa27.95■■■□□ 2.07
RDX-214ENST00000533678 CARMIL1Q5VZK9 1371 aa27.83■■■□□ 2.05
RDX-214ENST00000533678 SHROOM2Q13796 1616 aa27.81■■■□□ 2.04
RDX-214ENST00000533678 AEBP2Q6ZN18 517 aaPredicted RBP27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms