RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 NISCHQ9Y2I1 1504 aa38.05■■■■□ 3.68
CPSF1-211ENST00000533492 CCDC180Q9P1Z9 1646 aa33.97■■■■□ 3.03
CPSF1-211ENST00000533492 ABCC9O60706 1549 aa33.78■■■■□ 3
CPSF1-211ENST00000533492 RB1CC1Q8TDY2 1594 aa32.26■■■□□ 2.75
CPSF1-211ENST00000533492 DCAF8L2P0C7V8 631 aa32.17■■■□□ 2.74
CPSF1-211ENST00000533492 NACADO15069 1562 aa32.1■■■□□ 2.73
CPSF1-211ENST00000533492 MYO15BQ96JP2 1530 aa31.71■■■□□ 2.67
CPSF1-211ENST00000533492 ZCCHC6Q5VYS8 1495 aaKnown RBP31.56■■■□□ 2.64
CPSF1-211ENST00000533492 PABPN1Q86U42 306 aaKnown RBP eCLIP31.54■■■□□ 2.64
CPSF1-211ENST00000533492 UNC13AQ9UPW8 1703 aa31.46■■■□□ 2.63
CPSF1-211ENST00000533492 DNAJC5BQ9UF47 199 aa31.43■■■□□ 2.62
CPSF1-211ENST00000533492 DCAF1Q9Y4B6 1507 aa31.42■■■□□ 2.62
CPSF1-211ENST00000533492 BICRAQ9NZM4 1560 aa31.25■■■□□ 2.59
CPSF1-211ENST00000533492 SCRIBQ14160 1630 aa31.02■■■□□ 2.56
CPSF1-211ENST00000533492 SHROOM4Q9ULL8 1493 aa30.88■■■□□ 2.53
CPSF1-211ENST00000533492 EIF4G1Q04637 1599 aaKnown RBP30.49■■■□□ 2.47
CPSF1-211ENST00000533492 CC2D2AQ9P2K1 1620 aa30.49■■■□□ 2.47
CPSF1-211ENST00000533492 CECR2Q9BXF3 1484 aa30.39■■■□□ 2.46
CPSF1-211ENST00000533492 NCAPD3P42695 1498 aa29.63■■■□□ 2.33
CPSF1-211ENST00000533492 SMARCA4P51532 1647 aa29.6■■■□□ 2.33
CPSF1-211ENST00000533492 ATAD2BQ9ULI0 1458 aa29.58■■■□□ 2.33
CPSF1-211ENST00000533492 SMARCA2P51531 1590 aa29.52■■■□□ 2.32
CPSF1-211ENST00000533492 BAZ1AQ9NRL2 1556 aaPredicted RBP29.52■■■□□ 2.32
CPSF1-211ENST00000533492 HMGXB3Q12766 1538 aa29.4■■■□□ 2.3
CPSF1-211ENST00000533492 BAZ1BQ9UIG0 1483 aaKnown RBP29.34■■■□□ 2.29
CPSF1-211ENST00000533492 MROH2BQ7Z745 1585 aa29.31■■■□□ 2.28
CPSF1-211ENST00000533492 PEG3Q9GZU2 1588 aa29.28■■■□□ 2.28
CPSF1-211ENST00000533492 ERCC6Q03468 1493 aa29.17■■■□□ 2.26
CPSF1-211ENST00000533492 NESP48681 1621 aa29.07■■■□□ 2.24
CPSF1-211ENST00000533492 WIZO95785 1651 aa28.98■■■□□ 2.23
CPSF1-211ENST00000533492 CUX2O14529 1486 aa28.97■■■□□ 2.23
CPSF1-211ENST00000533492 LAMC3Q9Y6N6 1575 aa28.92■■■□□ 2.22
CPSF1-211ENST00000533492 RSF1Q96T23 1441 aaPredicted RBP28.83■■■□□ 2.21
CPSF1-211ENST00000533492 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
CPSF1-211ENST00000533492 CADPSQ9ULU8 1353 aa28.78■■■□□ 2.2
CPSF1-211ENST00000533492 DNAJC5Q9H3Z4 198 aa28.69■■■□□ 2.18
CPSF1-211ENST00000533492 KIF21AQ7Z4S6 1674 aa28.68■■■□□ 2.18
CPSF1-211ENST00000533492 THOC2Q8NI27 1593 aaKnown RBP28.67■■■□□ 2.18
CPSF1-211ENST00000533492 TOP2AP11388 1531 aaKnown RBP28.63■■■□□ 2.17
CPSF1-211ENST00000533492 MRC2Q9UBG0 1479 aa28.48■■■□□ 2.15
CPSF1-211ENST00000533492 CFTRP13569 1480 aa28.47■■■□□ 2.15
CPSF1-211ENST00000533492 CEP164Q9UPV0 1460 aa28.45■■■□□ 2.14
CPSF1-211ENST00000533492 FANCD2Q9BXW9 1451 aa28.43■■■□□ 2.14
CPSF1-211ENST00000533492 WDR62O43379 1518 aa28.37■■■□□ 2.13
CPSF1-211ENST00000533492 CCDC88BA6NC98 1476 aa28.33■■■□□ 2.13
CPSF1-211ENST00000533492 PRDM2Q13029 1718 aa28.17■■■□□ 2.1
CPSF1-211ENST00000533492 URB2Q14146 1524 aaKnown RBP28.15■■■□□ 2.1
CPSF1-211ENST00000533492 ABCC8Q09428 1581 aa27.92■■■□□ 2.06
CPSF1-211ENST00000533492 TOPBP1Q92547 1522 aa27.92■■■□□ 2.06
CPSF1-211ENST00000533492 SUPT5HO00267 1087 aaKnown RBP27.89■■■□□ 2.06
CPSF1-211ENST00000533492 IFT140Q96RY7 1462 aa27.86■■■□□ 2.05
CPSF1-211ENST00000533492 DNMBPQ6XZF7 1577 aa27.82■■■□□ 2.04
CPSF1-211ENST00000533492 OSCARQ8IYS5 282 aa27.8■■■□□ 2.04
CPSF1-211ENST00000533492 ZNF608Q9ULD9 1512 aaPredicted RBP27.77■■■□□ 2.04
CPSF1-211ENST00000533492 POLA1P09884 1462 aaPredicted RBP27.64■■■□□ 2.02
CPSF1-211ENST00000533492 TRIM41Q8WV44 630 aa27.61■■■□□ 2.01
CPSF1-211ENST00000533492 EIF4G3O43432 1585 aaKnown RBP27.6■■■□□ 2.01
CPSF1-211ENST00000533492 TARBP1Q13395 1621 aaKnown RBP27.6■■■□□ 2.01
CPSF1-211ENST00000533492 AQRO60306 1485 aaKnown RBP eCLIP27.59■■■□□ 2.01
CPSF1-211ENST00000533492 SOGA1O94964 1423 aa27.58■■■□□ 2
CPSF1-211ENST00000533492 RAD54L2Q9Y4B4 1467 aa27.56■■■□□ 2
CPSF1-211ENST00000533492 FGD5Q6ZNL6 1462 aa27.52■■■□□ 2
CPSF1-211ENST00000533492 CUX1P39880 1505 aa27.51■■■□□ 2
CPSF1-211ENST00000533492 TDRD9Q8NDG6 1382 aaKnown RBP27.48■■□□□ 1.99
CPSF1-211ENST00000533492 FBLN2P98095 1184 aa27.45■■□□□ 1.98
CPSF1-211ENST00000533492 WDR97A6NE52 1622 aa27.36■■□□□ 1.97
CPSF1-211ENST00000533492 CHD1O14646 1710 aa27.36■■□□□ 1.97
CPSF1-211ENST00000533492 SNAPC4Q5SXM2 1469 aa27.3■■□□□ 1.96
CPSF1-211ENST00000533492 RIMBP3CA6NJZ7 1639 aa27.29■■□□□ 1.96
CPSF1-211ENST00000533492 RIMBP3BA6NNM3 1639 aa27.29■■□□□ 1.96
CPSF1-211ENST00000533492 RIMBP3Q9UFD9 1639 aa27.29■■□□□ 1.96
CPSF1-211ENST00000533492 GRIN2BQ13224 1484 aa27.28■■□□□ 1.96
CPSF1-211ENST00000533492 CHMP7Q8WUX9 453 aaPredicted RBP27.28■■□□□ 1.96
CPSF1-211ENST00000533492 ARHGEF11O15085 1522 aa27.25■■□□□ 1.95
CPSF1-211ENST00000533492 MAGI1Q96QZ7 1491 aaPredicted RBP27.24■■□□□ 1.95
CPSF1-211ENST00000533492 GAPVD1Q14C86 1478 aa27.23■■□□□ 1.95
CPSF1-211ENST00000533492 WRNQ14191 1432 aaPredicted RBP eCLIP27.22■■□□□ 1.95
CPSF1-211ENST00000533492 ABCA10Q8WWZ4 1543 aa27.21■■□□□ 1.95
CPSF1-211ENST00000533492 TOP2BQ02880 1626 aa27.16■■□□□ 1.94
CPSF1-211ENST00000533492 PBRM1Q86U86 1689 aa27.14■■□□□ 1.94
CPSF1-211ENST00000533492 SYNJ2O15056 1496 aa27.14■■□□□ 1.94
CPSF1-211ENST00000533492 CYB5RLQ6IPT4 315 aa27.14■■□□□ 1.94
CPSF1-211ENST00000533492 BIVM-ERCC5R4GMW8 1640 aa27.14■■□□□ 1.94
CPSF1-211ENST00000533492 SYNJ1O43426 1573 aa27.12■■□□□ 1.93
CPSF1-211ENST00000533492 ABCA5Q8WWZ7 1642 aa27.11■■□□□ 1.93
CPSF1-211ENST00000533492 CLASP1Q7Z460 1538 aa27.02■■□□□ 1.92
CPSF1-211ENST00000533492 ARAP1Q96P48 1450 aa26.99■■□□□ 1.91
CPSF1-211ENST00000533492 GRIN2AQ12879 1464 aa26.91■■□□□ 1.9
CPSF1-211ENST00000533492 FHAD1B1AJZ9 1412 aa26.9■■□□□ 1.9
CPSF1-211ENST00000533492 ADAMTS12P58397 1594 aa26.89■■□□□ 1.9
CPSF1-211ENST00000533492 ERICH3Q5RHP9 1530 aa26.88■■□□□ 1.89
CPSF1-211ENST00000533492 NUP160Q12769 1436 aa26.8■■□□□ 1.88
CPSF1-211ENST00000533492 TRHP20396 242 aaPredicted RBP26.78■■□□□ 1.88
CPSF1-211ENST00000533492 CEP170Q5SW79 1584 aa26.77■■□□□ 1.88
CPSF1-211ENST00000533492 KIF27Q86VH2 1401 aa26.71■■□□□ 1.87
CPSF1-211ENST00000533492 ERCC6L2Q5T890 1561 aa26.64■■□□□ 1.86
CPSF1-211ENST00000533492 IGF1RP08069 1367 aa26.64■■□□□ 1.86
CPSF1-211ENST00000533492 JPH4Q96JJ6 628 aa26.62■■□□□ 1.85
CPSF1-211ENST00000533492 SHROOM2Q13796 1616 aa26.61■■□□□ 1.85
CPSF1-211ENST00000533492 PRG4Q92954 1404 aaPredicted RBP26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms