RNA–Protein interactions for RNA: ENST00000533438.1

CLCF1-202, Transcript of cardiotrophin like cytokine factor 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CLCF1, Length 967 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1-202ENST00000533438 NISCHQ9Y2I1 1504 aa28.26■■■□□ 2.11
CLCF1-202ENST00000533438 CCDC180Q9P1Z9 1646 aa25.34■■□□□ 1.65
CLCF1-202ENST00000533438 ABCC9O60706 1549 aa25.17■■□□□ 1.62
CLCF1-202ENST00000533438 DNAJC5BQ9UF47 199 aa24.03■■□□□ 1.44
CLCF1-202ENST00000533438 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
CLCF1-202ENST00000533438 NACADO15069 1562 aa23.87■■□□□ 1.41
CLCF1-202ENST00000533438 DCAF8L2P0C7V8 631 aa23.65■■□□□ 1.38
CLCF1-202ENST00000533438 MYO15BQ96JP2 1530 aa23.64■■□□□ 1.37
CLCF1-202ENST00000533438 UNC13AQ9UPW8 1703 aa23.53■■□□□ 1.36
CLCF1-202ENST00000533438 ZCCHC6Q5VYS8 1495 aaKnown RBP23.48■■□□□ 1.35
CLCF1-202ENST00000533438 PABPN1Q86U42 306 aaKnown RBP eCLIP23.43■■□□□ 1.34
CLCF1-202ENST00000533438 DCAF1Q9Y4B6 1507 aa23.39■■□□□ 1.34
CLCF1-202ENST00000533438 BICRAQ9NZM4 1560 aa23.32■■□□□ 1.32
CLCF1-202ENST00000533438 SCRIBQ14160 1630 aa23.04■■□□□ 1.28
CLCF1-202ENST00000533438 SHROOM4Q9ULL8 1493 aa23.02■■□□□ 1.28
CLCF1-202ENST00000533438 CECR2Q9BXF3 1484 aa22.76■■□□□ 1.23
CLCF1-202ENST00000533438 CC2D2AQ9P2K1 1620 aa22.74■■□□□ 1.23
CLCF1-202ENST00000533438 EIF4G1Q04637 1599 aaKnown RBP22.71■■□□□ 1.23
CLCF1-202ENST00000533438 DNAJC5Q9H3Z4 198 aa22.31■■□□□ 1.16
CLCF1-202ENST00000533438 NCAPD3P42695 1498 aa22.03■■□□□ 1.12
CLCF1-202ENST00000533438 SMARCA4P51532 1647 aa22.03■■□□□ 1.12
CLCF1-202ENST00000533438 ATAD2BQ9ULI0 1458 aa21.98■■□□□ 1.11
CLCF1-202ENST00000533438 SMARCA2P51531 1590 aa21.94■■□□□ 1.1
CLCF1-202ENST00000533438 BAZ1AQ9NRL2 1556 aaPredicted RBP21.93■■□□□ 1.1
CLCF1-202ENST00000533438 HMGXB3Q12766 1538 aa21.91■■□□□ 1.1
CLCF1-202ENST00000533438 CUX2O14529 1486 aa21.91■■□□□ 1.1
CLCF1-202ENST00000533438 PEG3Q9GZU2 1588 aa21.84■■□□□ 1.09
CLCF1-202ENST00000533438 MROH2BQ7Z745 1585 aa21.78■■□□□ 1.08
CLCF1-202ENST00000533438 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.07
CLCF1-202ENST00000533438 ERCC6Q03468 1493 aa21.72■■□□□ 1.07
CLCF1-202ENST00000533438 NESP48681 1621 aa21.62■■□□□ 1.05
CLCF1-202ENST00000533438 WIZO95785 1651 aa21.54■■□□□ 1.04
CLCF1-202ENST00000533438 LAMC3Q9Y6N6 1575 aa21.53■■□□□ 1.04
CLCF1-202ENST00000533438 THOC2Q8NI27 1593 aaKnown RBP21.42■■□□□ 1.02
CLCF1-202ENST00000533438 KIF21AQ7Z4S6 1674 aa21.4■■□□□ 1.02
CLCF1-202ENST00000533438 RSF1Q96T23 1441 aaPredicted RBP21.37■■□□□ 1.01
CLCF1-202ENST00000533438 PDS5BQ9NTI5 1447 aa21.35■■□□□ 1.01
CLCF1-202ENST00000533438 CADPSQ9ULU8 1353 aa21.35■■□□□ 1.01
CLCF1-202ENST00000533438 TOP2AP11388 1531 aaKnown RBP21.27■■□□□ 1
CLCF1-202ENST00000533438 MRC2Q9UBG0 1479 aa21.17■□□□□ 0.98
CLCF1-202ENST00000533438 CFTRP13569 1480 aa21.16■□□□□ 0.98
CLCF1-202ENST00000533438 WDR62O43379 1518 aa21.14■□□□□ 0.98
CLCF1-202ENST00000533438 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
CLCF1-202ENST00000533438 FANCD2Q9BXW9 1451 aa21.11■□□□□ 0.97
CLCF1-202ENST00000533438 PRDM2Q13029 1718 aa21.05■□□□□ 0.96
CLCF1-202ENST00000533438 CCDC88BA6NC98 1476 aa21.01■□□□□ 0.95
CLCF1-202ENST00000533438 TRIM41Q8WV44 630 aa20.97■□□□□ 0.95
CLCF1-202ENST00000533438 URB2Q14146 1524 aaKnown RBP20.94■□□□□ 0.94
CLCF1-202ENST00000533438 OSCARQ8IYS5 282 aa20.91■□□□□ 0.94
CLCF1-202ENST00000533438 TOPBP1Q92547 1522 aa20.74■□□□□ 0.91
CLCF1-202ENST00000533438 ABCC8Q09428 1581 aa20.7■□□□□ 0.9
CLCF1-202ENST00000533438 DNMBPQ6XZF7 1577 aa20.69■□□□□ 0.9
CLCF1-202ENST00000533438 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
CLCF1-202ENST00000533438 ZNF608Q9ULD9 1512 aaPredicted RBP20.63■□□□□ 0.89
CLCF1-202ENST00000533438 TARBP1Q13395 1621 aaKnown RBP20.58■□□□□ 0.89
CLCF1-202ENST00000533438 EIF4G3O43432 1585 aaKnown RBP20.57■□□□□ 0.88
CLCF1-202ENST00000533438 POLA1P09884 1462 aaPredicted RBP20.54■□□□□ 0.88
CLCF1-202ENST00000533438 RIMBP3CA6NJZ7 1639 aa20.51■□□□□ 0.87
CLCF1-202ENST00000533438 RIMBP3BA6NNM3 1639 aa20.51■□□□□ 0.87
CLCF1-202ENST00000533438 RIMBP3Q9UFD9 1639 aa20.51■□□□□ 0.87
CLCF1-202ENST00000533438 ARHGEF11O15085 1522 aa20.46■□□□□ 0.87
CLCF1-202ENST00000533438 AQRO60306 1485 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLCF1-202ENST00000533438 CUX1P39880 1505 aa20.45■□□□□ 0.86
CLCF1-202ENST00000533438 SUPT5HO00267 1087 aaKnown RBP20.45■□□□□ 0.86
CLCF1-202ENST00000533438 RAD54L2Q9Y4B4 1467 aa20.44■□□□□ 0.86
CLCF1-202ENST00000533438 FGD5Q6ZNL6 1462 aa20.43■□□□□ 0.86
CLCF1-202ENST00000533438 SOGA1O94964 1423 aa20.42■□□□□ 0.86
CLCF1-202ENST00000533438 CHD1O14646 1710 aa20.4■□□□□ 0.86
CLCF1-202ENST00000533438 WDR97A6NE52 1622 aa20.39■□□□□ 0.86
CLCF1-202ENST00000533438 CYB5RLQ6IPT4 315 aa20.36■□□□□ 0.85
CLCF1-202ENST00000533438 TDRD9Q8NDG6 1382 aaKnown RBP20.34■□□□□ 0.85
CLCF1-202ENST00000533438 SNAPC4Q5SXM2 1469 aa20.27■□□□□ 0.84
CLCF1-202ENST00000533438 ARAP1Q96P48 1450 aa20.25■□□□□ 0.83
CLCF1-202ENST00000533438 GRIN2BQ13224 1484 aa20.24■□□□□ 0.83
CLCF1-202ENST00000533438 MAGI1Q96QZ7 1491 aaPredicted RBP20.24■□□□□ 0.83
CLCF1-202ENST00000533438 PBRM1Q86U86 1689 aa20.23■□□□□ 0.83
CLCF1-202ENST00000533438 ABCA10Q8WWZ4 1543 aa20.22■□□□□ 0.83
CLCF1-202ENST00000533438 FBLN2P98095 1184 aa20.22■□□□□ 0.83
CLCF1-202ENST00000533438 BIVM-ERCC5R4GMW8 1640 aa20.21■□□□□ 0.83
CLCF1-202ENST00000533438 ABCA5Q8WWZ7 1642 aa20.2■□□□□ 0.82
CLCF1-202ENST00000533438 TOP2BQ02880 1626 aa20.19■□□□□ 0.82
CLCF1-202ENST00000533438 GAPVD1Q14C86 1478 aa20.18■□□□□ 0.82
CLCF1-202ENST00000533438 CLASP1Q7Z460 1538 aa20.17■□□□□ 0.82
CLCF1-202ENST00000533438 SYNJ2O15056 1496 aa20.16■□□□□ 0.82
CLCF1-202ENST00000533438 SYNJ1O43426 1573 aa20.16■□□□□ 0.82
CLCF1-202ENST00000533438 WRNQ14191 1432 aaPredicted RBP eCLIP20.15■□□□□ 0.82
CLCF1-202ENST00000533438 TRHP20396 242 aaPredicted RBP20.14■□□□□ 0.81
CLCF1-202ENST00000533438 CHMP7Q8WUX9 453 aaPredicted RBP20.12■□□□□ 0.81
CLCF1-202ENST00000533438 ADAMTS12P58397 1594 aa20.03■□□□□ 0.8
CLCF1-202ENST00000533438 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
CLCF1-202ENST00000533438 ERICH3Q5RHP9 1530 aa19.97■□□□□ 0.79
CLCF1-202ENST00000533438 FHAD1B1AJZ9 1412 aa19.93■□□□□ 0.78
CLCF1-202ENST00000533438 CEP170Q5SW79 1584 aa19.93■□□□□ 0.78
CLCF1-202ENST00000533438 NUP160Q12769 1436 aa19.93■□□□□ 0.78
CLCF1-202ENST00000533438 SHROOM2Q13796 1616 aa19.86■□□□□ 0.77
CLCF1-202ENST00000533438 ERCC6L2Q5T890 1561 aa19.84■□□□□ 0.77
CLCF1-202ENST00000533438 AEBP2Q6ZN18 517 aaPredicted RBP19.75■□□□□ 0.75
CLCF1-202ENST00000533438 RUSC2Q8N2Y8 1516 aa19.74■□□□□ 0.75
CLCF1-202ENST00000533438 KIF27Q86VH2 1401 aa19.74■□□□□ 0.75
CLCF1-202ENST00000533438 CUL7Q14999 1698 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms