RNA–Protein interactions for RNA: ENST00000533346.5

NUP98-220, Transcript of nucleoporin 98, humanhuman

TSL 2

Gene NUP98, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-220ENST00000533346 NISCHQ9Y2I1 1504 aa24.21■■□□□ 1.47
NUP98-220ENST00000533346 CCDC180Q9P1Z9 1646 aa21.62■■□□□ 1.05
NUP98-220ENST00000533346 ABCC9O60706 1549 aa21.04■□□□□ 0.96
NUP98-220ENST00000533346 NACADO15069 1562 aa20.33■□□□□ 0.84
NUP98-220ENST00000533346 RB1CC1Q8TDY2 1594 aa20.33■□□□□ 0.84
NUP98-220ENST00000533346 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
NUP98-220ENST00000533346 ZCCHC6Q5VYS8 1495 aaKnown RBP20.16■□□□□ 0.82
NUP98-220ENST00000533346 DCAF1Q9Y4B6 1507 aa20.14■□□□□ 0.81
NUP98-220ENST00000533346 DNAJC5BQ9UF47 199 aa20.05■□□□□ 0.8
NUP98-220ENST00000533346 DCAF8L2P0C7V8 631 aa20.03■□□□□ 0.8
NUP98-220ENST00000533346 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
NUP98-220ENST00000533346 BICRAQ9NZM4 1560 aa19.73■□□□□ 0.75
NUP98-220ENST00000533346 SHROOM4Q9ULL8 1493 aa19.61■□□□□ 0.73
NUP98-220ENST00000533346 PABPN1Q86U42 306 aaKnown RBP eCLIP19.6■□□□□ 0.73
NUP98-220ENST00000533346 SCRIBQ14160 1630 aa19.55■□□□□ 0.72
NUP98-220ENST00000533346 EIF4G1Q04637 1599 aaKnown RBP19.19■□□□□ 0.66
NUP98-220ENST00000533346 CC2D2AQ9P2K1 1620 aa19.11■□□□□ 0.65
NUP98-220ENST00000533346 CECR2Q9BXF3 1484 aa18.96■□□□□ 0.63
NUP98-220ENST00000533346 SMARCA4P51532 1647 aa18.79■□□□□ 0.6
NUP98-220ENST00000533346 BAZ1AQ9NRL2 1556 aaPredicted RBP18.77■□□□□ 0.6
NUP98-220ENST00000533346 NCAPD3P42695 1498 aa18.77■□□□□ 0.59
NUP98-220ENST00000533346 ATAD2BQ9ULI0 1458 aa18.71■□□□□ 0.59
NUP98-220ENST00000533346 SMARCA2P51531 1590 aa18.7■□□□□ 0.58
NUP98-220ENST00000533346 PEG3Q9GZU2 1588 aa18.7■□□□□ 0.58
NUP98-220ENST00000533346 HMGXB3Q12766 1538 aa18.65■□□□□ 0.58
NUP98-220ENST00000533346 MROH2BQ7Z745 1585 aa18.61■□□□□ 0.57
NUP98-220ENST00000533346 DNAJC5Q9H3Z4 198 aa18.57■□□□□ 0.56
NUP98-220ENST00000533346 BAZ1BQ9UIG0 1483 aaKnown RBP18.51■□□□□ 0.55
NUP98-220ENST00000533346 WIZO95785 1651 aa18.4■□□□□ 0.54
NUP98-220ENST00000533346 RSF1Q96T23 1441 aaPredicted RBP18.39■□□□□ 0.53
NUP98-220ENST00000533346 LAMC3Q9Y6N6 1575 aa18.27■□□□□ 0.52
NUP98-220ENST00000533346 TOP2AP11388 1531 aaKnown RBP18.23■□□□□ 0.51
NUP98-220ENST00000533346 NESP48681 1621 aa18.2■□□□□ 0.5
NUP98-220ENST00000533346 CADPSQ9ULU8 1353 aa18.16■□□□□ 0.5
NUP98-220ENST00000533346 ERCC6Q03468 1493 aa18.13■□□□□ 0.49
NUP98-220ENST00000533346 CUX2O14529 1486 aa18.11■□□□□ 0.49
NUP98-220ENST00000533346 PDS5BQ9NTI5 1447 aa18.1■□□□□ 0.49
NUP98-220ENST00000533346 CFTRP13569 1480 aa18.06■□□□□ 0.48
NUP98-220ENST00000533346 KIF21AQ7Z4S6 1674 aa18.04■□□□□ 0.48
NUP98-220ENST00000533346 THOC2Q8NI27 1593 aaKnown RBP18.03■□□□□ 0.48
NUP98-220ENST00000533346 CCDC88BA6NC98 1476 aa18■□□□□ 0.47
NUP98-220ENST00000533346 PRDM2Q13029 1718 aa17.97■□□□□ 0.47
NUP98-220ENST00000533346 FANCD2Q9BXW9 1451 aa17.91■□□□□ 0.46
NUP98-220ENST00000533346 MRC2Q9UBG0 1479 aa17.9■□□□□ 0.46
NUP98-220ENST00000533346 CEP164Q9UPV0 1460 aa17.89■□□□□ 0.45
NUP98-220ENST00000533346 WDR62O43379 1518 aa17.89■□□□□ 0.45
NUP98-220ENST00000533346 URB2Q14146 1524 aaKnown RBP17.74■□□□□ 0.43
NUP98-220ENST00000533346 ABCC8Q09428 1581 aa17.71■□□□□ 0.43
NUP98-220ENST00000533346 SUPT5HO00267 1087 aaKnown RBP17.69■□□□□ 0.42
NUP98-220ENST00000533346 TOPBP1Q92547 1522 aa17.63■□□□□ 0.41
NUP98-220ENST00000533346 DNMBPQ6XZF7 1577 aa17.63■□□□□ 0.41
NUP98-220ENST00000533346 TRIM41Q8WV44 630 aa17.63■□□□□ 0.41
NUP98-220ENST00000533346 IFT140Q96RY7 1462 aa17.56■□□□□ 0.4
NUP98-220ENST00000533346 TARBP1Q13395 1621 aaKnown RBP17.49■□□□□ 0.39
NUP98-220ENST00000533346 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
NUP98-220ENST00000533346 CUX1P39880 1505 aa17.47■□□□□ 0.39
NUP98-220ENST00000533346 WDR97A6NE52 1622 aa17.43■□□□□ 0.38
NUP98-220ENST00000533346 ZNF608Q9ULD9 1512 aaPredicted RBP17.42■□□□□ 0.38
NUP98-220ENST00000533346 FGD5Q6ZNL6 1462 aa17.4■□□□□ 0.38
NUP98-220ENST00000533346 SOGA1O94964 1423 aa17.39■□□□□ 0.38
NUP98-220ENST00000533346 EIF4G3O43432 1585 aaKnown RBP17.38■□□□□ 0.37
NUP98-220ENST00000533346 BIVM-ERCC5R4GMW8 1640 aa17.36■□□□□ 0.37
NUP98-220ENST00000533346 RAD54L2Q9Y4B4 1467 aa17.35■□□□□ 0.37
NUP98-220ENST00000533346 TOP2BQ02880 1626 aa17.34■□□□□ 0.37
NUP98-220ENST00000533346 WRNQ14191 1432 aaPredicted RBP eCLIP17.32■□□□□ 0.36
NUP98-220ENST00000533346 AQRO60306 1485 aaKnown RBP eCLIP17.31■□□□□ 0.363e-7■■■■■ 37.3
NUP98-220ENST00000533346 ABCA10Q8WWZ4 1543 aa17.29■□□□□ 0.36
NUP98-220ENST00000533346 OSCARQ8IYS5 282 aa17.28■□□□□ 0.36
NUP98-220ENST00000533346 SYNJ1O43426 1573 aa17.28■□□□□ 0.36
NUP98-220ENST00000533346 TDRD9Q8NDG6 1382 aaKnown RBP17.25■□□□□ 0.35
NUP98-220ENST00000533346 ABCA5Q8WWZ7 1642 aa17.23■□□□□ 0.35
NUP98-220ENST00000533346 GRIN2BQ13224 1484 aa17.22■□□□□ 0.35
NUP98-220ENST00000533346 MAGI1Q96QZ7 1491 aaPredicted RBP17.21■□□□□ 0.35
NUP98-220ENST00000533346 GAPVD1Q14C86 1478 aa17.19■□□□□ 0.34
NUP98-220ENST00000533346 PBRM1Q86U86 1689 aa17.19■□□□□ 0.34
NUP98-220ENST00000533346 CHD1O14646 1710 aa17.18■□□□□ 0.34
NUP98-220ENST00000533346 RIMBP3CA6NJZ7 1639 aa17.18■□□□□ 0.34
NUP98-220ENST00000533346 RIMBP3BA6NNM3 1639 aa17.18■□□□□ 0.34
NUP98-220ENST00000533346 RIMBP3Q9UFD9 1639 aa17.18■□□□□ 0.34
NUP98-220ENST00000533346 SNAPC4Q5SXM2 1469 aa17.15■□□□□ 0.34
NUP98-220ENST00000533346 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
NUP98-220ENST00000533346 ERICH3Q5RHP9 1530 aa17.1■□□□□ 0.33
NUP98-220ENST00000533346 CHMP7Q8WUX9 453 aaPredicted RBP17.05■□□□□ 0.32
NUP98-220ENST00000533346 CLASP1Q7Z460 1538 aa17.04■□□□□ 0.32
NUP98-220ENST00000533346 ADAMTS12P58397 1594 aa17.03■□□□□ 0.32
NUP98-220ENST00000533346 ARHGEF11O15085 1522 aa17.02■□□□□ 0.32
NUP98-220ENST00000533346 FBLN2P98095 1184 aa17.02■□□□□ 0.32
NUP98-220ENST00000533346 FHAD1B1AJZ9 1412 aa17.02■□□□□ 0.31
NUP98-220ENST00000533346 GRIN2AQ12879 1464 aa16.99■□□□□ 0.31
NUP98-220ENST00000533346 KIF27Q86VH2 1401 aa16.97■□□□□ 0.31
NUP98-220ENST00000533346 NUP160Q12769 1436 aa16.96■□□□□ 0.3
NUP98-220ENST00000533346 IGF1RP08069 1367 aa16.93■□□□□ 0.3
NUP98-220ENST00000533346 CUL7Q14999 1698 aa16.92■□□□□ 0.3
NUP98-220ENST00000533346 CEP170Q5SW79 1584 aa16.9■□□□□ 0.3
NUP98-220ENST00000533346 SHROOM2Q13796 1616 aa16.87■□□□□ 0.29
NUP98-220ENST00000533346 CYB5RLQ6IPT4 315 aa16.86■□□□□ 0.29
NUP98-220ENST00000533346 ARAP1Q96P48 1450 aa16.86■□□□□ 0.29
NUP98-220ENST00000533346 CARMIL1Q5VZK9 1371 aa16.8■□□□□ 0.28
NUP98-220ENST00000533346 RUSC2Q8N2Y8 1516 aa16.79■□□□□ 0.28
NUP98-220ENST00000533346 TRHP20396 242 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms