RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 NISCHQ9Y2I1 1504 aa37.17■■■■□ 3.54
TRIM3-213ENST00000533309 CCDC180Q9P1Z9 1646 aa32.65■■■□□ 2.82
TRIM3-213ENST00000533309 ZCCHC6Q5VYS8 1495 aaKnown RBP31.18■■■□□ 2.58
TRIM3-213ENST00000533309 ABCC9O60706 1549 aa31.06■■■□□ 2.56
TRIM3-213ENST00000533309 DCAF1Q9Y4B6 1507 aa30.77■■■□□ 2.52
TRIM3-213ENST00000533309 DCAF8L2P0C7V8 631 aa30.61■■■□□ 2.49
TRIM3-213ENST00000533309 MYO15BQ96JP2 1530 aa30.54■■■□□ 2.48
TRIM3-213ENST00000533309 NACADO15069 1562 aa30.43■■■□□ 2.46
TRIM3-213ENST00000533309 RB1CC1Q8TDY2 1594 aa30.25■■■□□ 2.43
TRIM3-213ENST00000533309 SHROOM4Q9ULL8 1493 aa29.96■■■□□ 2.39
TRIM3-213ENST00000533309 SCRIBQ14160 1630 aa29.9■■■□□ 2.38
TRIM3-213ENST00000533309 UNC13AQ9UPW8 1703 aa29.73■■■□□ 2.35
TRIM3-213ENST00000533309 BICRAQ9NZM4 1560 aa29.39■■■□□ 2.3
TRIM3-213ENST00000533309 PABPN1Q86U42 306 aaKnown RBP eCLIP29.16■■■□□ 2.26
TRIM3-213ENST00000533309 CECR2Q9BXF3 1484 aa28.89■■■□□ 2.22
TRIM3-213ENST00000533309 BAZ1AQ9NRL2 1556 aaPredicted RBP28.72■■■□□ 2.19
TRIM3-213ENST00000533309 MROH2BQ7Z745 1585 aa28.7■■■□□ 2.19
TRIM3-213ENST00000533309 SMARCA4P51532 1647 aa28.68■■■□□ 2.18
TRIM3-213ENST00000533309 RSF1Q96T23 1441 aaPredicted RBP28.67■■■□□ 2.18
TRIM3-213ENST00000533309 SUPT5HO00267 1087 aaKnown RBP28.61■■■□□ 2.17
TRIM3-213ENST00000533309 EIF4G1Q04637 1599 aaKnown RBP28.5■■■□□ 2.15
TRIM3-213ENST00000533309 WIZO95785 1651 aa28.46■■■□□ 2.15
TRIM3-213ENST00000533309 PEG3Q9GZU2 1588 aa28.37■■■□□ 2.13
TRIM3-213ENST00000533309 ATAD2BQ9ULI0 1458 aa28.25■■■□□ 2.11
TRIM3-213ENST00000533309 SMARCA2P51531 1590 aa28.23■■■□□ 2.11
TRIM3-213ENST00000533309 CC2D2AQ9P2K1 1620 aa28.16■■■□□ 2.1
TRIM3-213ENST00000533309 TOP2AP11388 1531 aaKnown RBP28.16■■■□□ 2.1
TRIM3-213ENST00000533309 NCAPD3P42695 1498 aa28.07■■■□□ 2.08
TRIM3-213ENST00000533309 BAZ1BQ9UIG0 1483 aaKnown RBP28.05■■■□□ 2.08
TRIM3-213ENST00000533309 HMGXB3Q12766 1538 aa28.04■■■□□ 2.08
TRIM3-213ENST00000533309 CCDC88BA6NC98 1476 aa27.82■■■□□ 2.04
TRIM3-213ENST00000533309 DNAJC5BQ9UF47 199 aa27.69■■■□□ 2.02
TRIM3-213ENST00000533309 CFTRP13569 1480 aa27.35■■□□□ 1.97
TRIM3-213ENST00000533309 PRDM2Q13029 1718 aa27.3■■□□□ 1.96
TRIM3-213ENST00000533309 CADPSQ9ULU8 1353 aa27.28■■□□□ 1.96
TRIM3-213ENST00000533309 CHIC1Q5VXU3 224 aa27.26■■□□□ 1.95
TRIM3-213ENST00000533309 LAMC3Q9Y6N6 1575 aa27.2■■□□□ 1.94
TRIM3-213ENST00000533309 NESP48681 1621 aa27.19■■□□□ 1.94
TRIM3-213ENST00000533309 ABCC8Q09428 1581 aa27.15■■□□□ 1.94
TRIM3-213ENST00000533309 FANCD2Q9BXW9 1451 aa27.01■■□□□ 1.91
TRIM3-213ENST00000533309 WRNQ14191 1432 aaPredicted RBP eCLIP26.98■■□□□ 1.91
TRIM3-213ENST00000533309 SYNJ1O43426 1573 aa26.95■■□□□ 1.9
TRIM3-213ENST00000533309 TRIM41Q8WV44 630 aa26.94■■□□□ 1.9
TRIM3-213ENST00000533309 KIF21AQ7Z4S6 1674 aa26.93■■□□□ 1.9
TRIM3-213ENST00000533309 PDS5BQ9NTI5 1447 aa26.92■■□□□ 1.9
TRIM3-213ENST00000533309 BIVM-ERCC5R4GMW8 1640 aa26.87■■□□□ 1.89
TRIM3-213ENST00000533309 CEP164Q9UPV0 1460 aa26.87■■□□□ 1.89
TRIM3-213ENST00000533309 CUX1P39880 1505 aa26.87■■□□□ 1.89
TRIM3-213ENST00000533309 TOP2BQ02880 1626 aa26.87■■□□□ 1.89
TRIM3-213ENST00000533309 DNMBPQ6XZF7 1577 aa26.74■■□□□ 1.87
TRIM3-213ENST00000533309 URB2Q14146 1524 aaKnown RBP26.72■■□□□ 1.87
TRIM3-213ENST00000533309 TOPBP1Q92547 1522 aa26.7■■□□□ 1.86
TRIM3-213ENST00000533309 ERCC6Q03468 1493 aa26.64■■□□□ 1.86
TRIM3-213ENST00000533309 MRC2Q9UBG0 1479 aa26.64■■□□□ 1.86
TRIM3-213ENST00000533309 FGD5Q6ZNL6 1462 aa26.61■■□□□ 1.85
TRIM3-213ENST00000533309 THOC2Q8NI27 1593 aaKnown RBP26.59■■□□□ 1.85
TRIM3-213ENST00000533309 WDR62O43379 1518 aa26.55■■□□□ 1.84
TRIM3-213ENST00000533309 POLA1P09884 1462 aaPredicted RBP26.54■■□□□ 1.84
TRIM3-213ENST00000533309 SOGA1O94964 1423 aa26.53■■□□□ 1.84
TRIM3-213ENST00000533309 RUSC2Q8N2Y8 1516 aa26.47■■□□□ 1.83
TRIM3-213ENST00000533309 RAD54L2Q9Y4B4 1467 aa26.42■■□□□ 1.82
TRIM3-213ENST00000533309 WDR97A6NE52 1622 aa26.41■■□□□ 1.82
TRIM3-213ENST00000533309 FAM9AQ8IZU1 332 aaPredicted RBP26.41■■□□□ 1.82
TRIM3-213ENST00000533309 EEA1Q15075 1411 aa26.4■■□□□ 1.82
TRIM3-213ENST00000533309 ABCA10Q8WWZ4 1543 aa26.38■■□□□ 1.81
TRIM3-213ENST00000533309 TARBP1Q13395 1621 aaKnown RBP26.37■■□□□ 1.81
TRIM3-213ENST00000533309 CUX2O14529 1486 aa26.37■■□□□ 1.81
TRIM3-213ENST00000533309 KIF27Q86VH2 1401 aa26.31■■□□□ 1.8
TRIM3-213ENST00000533309 IFT140Q96RY7 1462 aa26.25■■□□□ 1.79
TRIM3-213ENST00000533309 ABCA5Q8WWZ7 1642 aa26.24■■□□□ 1.79
TRIM3-213ENST00000533309 CSRNP3Q8WYN3 585 aa26.24■■□□□ 1.79
TRIM3-213ENST00000533309 TDRD9Q8NDG6 1382 aaKnown RBP26.16■■□□□ 1.78
TRIM3-213ENST00000533309 LOC105371045A0A1W2PR82 267 aa26.16■■□□□ 1.78
TRIM3-213ENST00000533309 KIF21BO75037 1637 aa26.15■■□□□ 1.78
TRIM3-213ENST00000533309 ZNF608Q9ULD9 1512 aaPredicted RBP26.13■■□□□ 1.77
TRIM3-213ENST00000533309 IGF1RP08069 1367 aa26.12■■□□□ 1.77
TRIM3-213ENST00000533309 GAPVD1Q14C86 1478 aa26.12■■□□□ 1.77
TRIM3-213ENST00000533309 PRXQ9BXM0 1461 aa26.1■■□□□ 1.77
TRIM3-213ENST00000533309 PBRM1Q86U86 1689 aa26.09■■□□□ 1.77
TRIM3-213ENST00000533309 EIF4G3O43432 1585 aaKnown RBP26.08■■□□□ 1.77
TRIM3-213ENST00000533309 AQRO60306 1485 aaKnown RBP eCLIP26.07■■□□□ 1.76
TRIM3-213ENST00000533309 ERICH3Q5RHP9 1530 aa26.07■■□□□ 1.76
TRIM3-213ENST00000533309 GOLGA3Q08378 1498 aa26.03■■□□□ 1.76
TRIM3-213ENST00000533309 CUL7Q14999 1698 aa26.03■■□□□ 1.76
TRIM3-213ENST00000533309 RAPGEF2Q9Y4G8 1499 aa26.02■■□□□ 1.76
TRIM3-213ENST00000533309 EHMT2Q96KQ7 1210 aa26.02■■□□□ 1.76
TRIM3-213ENST00000533309 GRIN2BQ13224 1484 aa25.98■■□□□ 1.75
TRIM3-213ENST00000533309 CARMIL1Q5VZK9 1371 aa25.97■■□□□ 1.75
TRIM3-213ENST00000533309 ADAMTS12P58397 1594 aa25.91■■□□□ 1.74
TRIM3-213ENST00000533309 TNIKQ9UKE5 1360 aa25.86■■□□□ 1.73
TRIM3-213ENST00000533309 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
TRIM3-213ENST00000533309 FHAD1B1AJZ9 1412 aa25.83■■□□□ 1.73
TRIM3-213ENST00000533309 UBTFP17480 764 aaKnown RBP25.82■■□□□ 1.72
TRIM3-213ENST00000533309 MAGI1Q96QZ7 1491 aaPredicted RBP25.81■■□□□ 1.72
TRIM3-213ENST00000533309 CTTNBP2Q8WZ74 1663 aa25.72■■□□□ 1.71
TRIM3-213ENST00000533309 CEP162Q5TB80 1403 aa25.72■■□□□ 1.71
TRIM3-213ENST00000533309 SYNJ2O15056 1496 aa25.71■■□□□ 1.71
TRIM3-213ENST00000533309 GRIN2AQ12879 1464 aa25.68■■□□□ 1.7
TRIM3-213ENST00000533309 CHD1O14646 1710 aa25.6■■□□□ 1.69
TRIM3-213ENST00000533309 CLIP1P30622 1438 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms