RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 NISCHQ9Y2I1 1504 aa48.12■■■■■ 5.29
CPSF1-209ENST00000532725 CCDC180Q9P1Z9 1646 aa42.64■■■■■ 4.42
CPSF1-209ENST00000532725 ABCC9O60706 1549 aa41.8■■■■■ 4.28
CPSF1-209ENST00000532725 DCAF8L2P0C7V8 631 aa40.29■■■■■ 4.04
CPSF1-209ENST00000532725 NACADO15069 1562 aa40.17■■■■■ 4.02
CPSF1-209ENST00000532725 RB1CC1Q8TDY2 1594 aa40.17■■■■■ 4.02
CPSF1-209ENST00000532725 ZCCHC6Q5VYS8 1495 aaKnown RBP40.07■■■■■ 4
CPSF1-209ENST00000532725 MYO15BQ96JP2 1530 aa39.96■■■■□ 3.99
CPSF1-209ENST00000532725 DCAF1Q9Y4B6 1507 aa39.81■■■■□ 3.96
CPSF1-209ENST00000532725 UNC13AQ9UPW8 1703 aa39.21■■■■□ 3.87
CPSF1-209ENST00000532725 PABPN1Q86U42 306 aaKnown RBP eCLIP39.17■■■■□ 3.867e-8■■■■■ 27.7
CPSF1-209ENST00000532725 BICRAQ9NZM4 1560 aa39■■■■□ 3.83
CPSF1-209ENST00000532725 SCRIBQ14160 1630 aa38.94■■■■□ 3.82
CPSF1-209ENST00000532725 SHROOM4Q9ULL8 1493 aa38.54■■■■□ 3.76
CPSF1-209ENST00000532725 DNAJC5BQ9UF47 199 aa38.49■■■■□ 3.75
CPSF1-209ENST00000532725 EIF4G1Q04637 1599 aaKnown RBP37.94■■■■□ 3.66
CPSF1-209ENST00000532725 CC2D2AQ9P2K1 1620 aa37.78■■■■□ 3.64
CPSF1-209ENST00000532725 CECR2Q9BXF3 1484 aa37.56■■■■□ 3.6
CPSF1-209ENST00000532725 SMARCA4P51532 1647 aa37.28■■■■□ 3.56
CPSF1-209ENST00000532725 BAZ1AQ9NRL2 1556 aaPredicted RBP37.25■■■■□ 3.55
CPSF1-209ENST00000532725 NCAPD3P42695 1498 aa37.14■■■■□ 3.54
CPSF1-209ENST00000532725 ATAD2BQ9ULI0 1458 aa37.14■■■■□ 3.54
CPSF1-209ENST00000532725 MROH2BQ7Z745 1585 aa37.1■■■■□ 3.53
CPSF1-209ENST00000532725 SMARCA2P51531 1590 aa37.04■■■■□ 3.52
CPSF1-209ENST00000532725 PEG3Q9GZU2 1588 aa36.94■■■■□ 3.5
CPSF1-209ENST00000532725 HMGXB3Q12766 1538 aa36.85■■■■□ 3.49
CPSF1-209ENST00000532725 BAZ1BQ9UIG0 1483 aaKnown RBP36.78■■■■□ 3.48
CPSF1-209ENST00000532725 RSF1Q96T23 1441 aaPredicted RBP36.73■■■■□ 3.47
CPSF1-209ENST00000532725 WIZO95785 1651 aa36.66■■■■□ 3.46
CPSF1-209ENST00000532725 TOP2AP11388 1531 aaKnown RBP36.25■■■■□ 3.39
CPSF1-209ENST00000532725 NESP48681 1621 aa36.2■■■■□ 3.39
CPSF1-209ENST00000532725 CADPSQ9ULU8 1353 aa36.07■■■■□ 3.36
CPSF1-209ENST00000532725 LAMC3Q9Y6N6 1575 aa36.05■■■■□ 3.36
CPSF1-209ENST00000532725 ERCC6Q03468 1493 aa35.99■■■■□ 3.35
CPSF1-209ENST00000532725 CCDC88BA6NC98 1476 aa35.92■■■■□ 3.34
CPSF1-209ENST00000532725 PDS5BQ9NTI5 1447 aa35.88■■■■□ 3.33
CPSF1-209ENST00000532725 SUPT5HO00267 1087 aaKnown RBP35.87■■■■□ 3.33
CPSF1-209ENST00000532725 CFTRP13569 1480 aa35.83■■■■□ 3.33
CPSF1-209ENST00000532725 KIF21AQ7Z4S6 1674 aa35.66■■■■□ 3.3
CPSF1-209ENST00000532725 CUX2O14529 1486 aa35.6■■■■□ 3.29
CPSF1-209ENST00000532725 FANCD2Q9BXW9 1451 aa35.6■■■■□ 3.29
CPSF1-209ENST00000532725 THOC2Q8NI27 1593 aaKnown RBP35.55■■■■□ 3.28
CPSF1-209ENST00000532725 CEP164Q9UPV0 1460 aa35.51■■■■□ 3.28
CPSF1-209ENST00000532725 MRC2Q9UBG0 1479 aa35.46■■■■□ 3.27
CPSF1-209ENST00000532725 PRDM2Q13029 1718 aa35.37■■■■□ 3.25
CPSF1-209ENST00000532725 WDR62O43379 1518 aa35.33■■■■□ 3.25
CPSF1-209ENST00000532725 URB2Q14146 1524 aaKnown RBP35.24■■■■□ 3.23
CPSF1-209ENST00000532725 TOPBP1Q92547 1522 aa35.03■■■■□ 3.2
CPSF1-209ENST00000532725 ABCC8Q09428 1581 aa35.03■■■■□ 3.2
CPSF1-209ENST00000532725 DNMBPQ6XZF7 1577 aa34.95■■■■□ 3.18
CPSF1-209ENST00000532725 IFT140Q96RY7 1462 aa34.79■■■■□ 3.16
CPSF1-209ENST00000532725 CUX1P39880 1505 aa34.78■■■■□ 3.16
CPSF1-209ENST00000532725 POLA1P09884 1462 aaPredicted RBP34.73■■■■□ 3.15
CPSF1-209ENST00000532725 ZNF608Q9ULD9 1512 aaPredicted RBP34.66■■■■□ 3.14
CPSF1-209ENST00000532725 FGD5Q6ZNL6 1462 aa34.65■■■■□ 3.14
CPSF1-209ENST00000532725 SOGA1O94964 1423 aa34.64■■■■□ 3.14
CPSF1-209ENST00000532725 RAD54L2Q9Y4B4 1467 aa34.63■■■■□ 3.13
CPSF1-209ENST00000532725 TARBP1Q13395 1621 aaKnown RBP34.62■■■■□ 3.13
CPSF1-209ENST00000532725 DNAJC5Q9H3Z4 198 aa34.61■■■■□ 3.13
CPSF1-209ENST00000532725 WRNQ14191 1432 aaPredicted RBP eCLIP34.59■■■■□ 3.13
CPSF1-209ENST00000532725 AQRO60306 1485 aaKnown RBP eCLIP34.51■■■■□ 3.116e-9■■□□□ 14
CPSF1-209ENST00000532725 TDRD9Q8NDG6 1382 aaKnown RBP34.47■■■■□ 3.11
CPSF1-209ENST00000532725 TOP2BQ02880 1626 aa34.46■■■■□ 3.11
CPSF1-209ENST00000532725 SYNJ1O43426 1573 aa34.45■■■■□ 3.11
CPSF1-209ENST00000532725 BIVM-ERCC5R4GMW8 1640 aa34.43■■■■□ 3.1
CPSF1-209ENST00000532725 EIF4G3O43432 1585 aaKnown RBP34.41■■■■□ 3.1
CPSF1-209ENST00000532725 ABCA10Q8WWZ4 1543 aa34.33■■■■□ 3.09
CPSF1-209ENST00000532725 WDR97A6NE52 1622 aa34.3■■■■□ 3.08
CPSF1-209ENST00000532725 OSCARQ8IYS5 282 aa34.26■■■■□ 3.08
CPSF1-209ENST00000532725 GAPVD1Q14C86 1478 aa34.21■■■■□ 3.07
CPSF1-209ENST00000532725 GRIN2BQ13224 1484 aa34.19■■■■□ 3.06
CPSF1-209ENST00000532725 ABCA5Q8WWZ7 1642 aa34.12■■■■□ 3.05
CPSF1-209ENST00000532725 SNAPC4Q5SXM2 1469 aa34.11■■■■□ 3.05
CPSF1-209ENST00000532725 FBLN2P98095 1184 aa34.09■■■■□ 3.05
CPSF1-209ENST00000532725 MAGI1Q96QZ7 1491 aaPredicted RBP34.07■■■■□ 3.04
CPSF1-209ENST00000532725 CHMP7Q8WUX9 453 aaPredicted RBP34.01■■■■□ 3.03
CPSF1-209ENST00000532725 PBRM1Q86U86 1689 aa34■■■■□ 3.03
CPSF1-209ENST00000532725 CHD1O14646 1710 aa33.96■■■■□ 3.03
CPSF1-209ENST00000532725 SYNJ2O15056 1496 aa33.95■■■■□ 3.03
CPSF1-209ENST00000532725 ERICH3Q5RHP9 1530 aa33.89■■■■□ 3.02
CPSF1-209ENST00000532725 TRIM41Q8WV44 630 aa33.88■■■■□ 3.01
CPSF1-209ENST00000532725 KIF27Q86VH2 1401 aa33.87■■■■□ 3.01
CPSF1-209ENST00000532725 FHAD1B1AJZ9 1412 aa33.82■■■■□ 3
CPSF1-209ENST00000532725 IGF1RP08069 1367 aa33.82■■■■□ 3
CPSF1-209ENST00000532725 ADAMTS12P58397 1594 aa33.78■■■■□ 3
CPSF1-209ENST00000532725 GRIN2AQ12879 1464 aa33.74■■■□□ 2.99
CPSF1-209ENST00000532725 CLASP1Q7Z460 1538 aa33.66■■■□□ 2.98
CPSF1-209ENST00000532725 RUSC2Q8N2Y8 1516 aa33.63■■■□□ 2.97
CPSF1-209ENST00000532725 NUP160Q12769 1436 aa33.62■■■□□ 2.97
CPSF1-209ENST00000532725 ARHGEF11O15085 1522 aa33.58■■■□□ 2.97
CPSF1-209ENST00000532725 CARMIL1Q5VZK9 1371 aa33.58■■■□□ 2.97
CPSF1-209ENST00000532725 RIMBP3CA6NJZ7 1639 aa33.56■■■□□ 2.96
CPSF1-209ENST00000532725 RIMBP3BA6NNM3 1639 aa33.56■■■□□ 2.96
CPSF1-209ENST00000532725 RIMBP3Q9UFD9 1639 aa33.56■■■□□ 2.96
CPSF1-209ENST00000532725 CEP170Q5SW79 1584 aa33.55■■■□□ 2.96
CPSF1-209ENST00000532725 CHIC1Q5VXU3 224 aa33.54■■■□□ 2.96
CPSF1-209ENST00000532725 CUL7Q14999 1698 aa33.52■■■□□ 2.96
CPSF1-209ENST00000532725 CYB5RLQ6IPT4 315 aa33.39■■■□□ 2.94
CPSF1-209ENST00000532725 JPH4Q96JJ6 628 aa33.37■■■□□ 2.93
CPSF1-209ENST00000532725 ARAP1Q96P48 1450 aa33.33■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms