RNA–Protein interactions for RNA: ENST00000532700.6

SMG1-203, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-203ENST00000532700 NISCHQ9Y2I1 1504 aa44.45■■■■■ 4.71
SMG1-203ENST00000532700 CCDC180Q9P1Z9 1646 aa39.73■■■■□ 3.95
SMG1-203ENST00000532700 ABCC9O60706 1549 aa39.38■■■■□ 3.89
SMG1-203ENST00000532700 RB1CC1Q8TDY2 1594 aa37.55■■■■□ 3.6
SMG1-203ENST00000532700 NACADO15069 1562 aa37.38■■■■□ 3.58
SMG1-203ENST00000532700 DCAF8L2P0C7V8 631 aa37.21■■■■□ 3.55
SMG1-203ENST00000532700 UNC13AQ9UPW8 1703 aa36.97■■■■□ 3.51
SMG1-203ENST00000532700 MYO15BQ96JP2 1530 aa36.96■■■■□ 3.51
SMG1-203ENST00000532700 ZCCHC6Q5VYS8 1495 aaKnown RBP36.95■■■■□ 3.51
SMG1-203ENST00000532700 PABPN1Q86U42 306 aaKnown RBP eCLIP36.68■■■■□ 3.46
SMG1-203ENST00000532700 DCAF1Q9Y4B6 1507 aa36.67■■■■□ 3.46
SMG1-203ENST00000532700 DNAJC5BQ9UF47 199 aa36.64■■■■□ 3.46
SMG1-203ENST00000532700 BICRAQ9NZM4 1560 aa36.63■■■■□ 3.45
SMG1-203ENST00000532700 SCRIBQ14160 1630 aa36.31■■■■□ 3.4
SMG1-203ENST00000532700 SHROOM4Q9ULL8 1493 aa35.91■■■■□ 3.34
SMG1-203ENST00000532700 CC2D2AQ9P2K1 1620 aa35.61■■■■□ 3.29
SMG1-203ENST00000532700 EIF4G1Q04637 1599 aaKnown RBP35.6■■■■□ 3.29
SMG1-203ENST00000532700 CECR2Q9BXF3 1484 aa35.36■■■■□ 3.25
SMG1-203ENST00000532700 SMARCA4P51532 1647 aa34.64■■■■□ 3.14
SMG1-203ENST00000532700 ATAD2BQ9ULI0 1458 aa34.52■■■■□ 3.12
SMG1-203ENST00000532700 NCAPD3P42695 1498 aa34.51■■■■□ 3.11
SMG1-203ENST00000532700 BAZ1AQ9NRL2 1556 aaPredicted RBP34.43■■■■□ 3.1
SMG1-203ENST00000532700 SMARCA2P51531 1590 aa34.37■■■■□ 3.09
SMG1-203ENST00000532700 MROH2BQ7Z745 1585 aa34.34■■■■□ 3.09
SMG1-203ENST00000532700 HMGXB3Q12766 1538 aa34.34■■■■□ 3.09
SMG1-203ENST00000532700 PEG3Q9GZU2 1588 aa34.26■■■■□ 3.07
SMG1-203ENST00000532700 BAZ1BQ9UIG0 1483 aaKnown RBP34.17■■■■□ 3.06
SMG1-203ENST00000532700 NESP48681 1621 aa34.01■■■■□ 3.04
SMG1-203ENST00000532700 WIZO95785 1651 aa33.98■■■■□ 3.03
SMG1-203ENST00000532700 ERCC6Q03468 1493 aa33.84■■■■□ 3.01
SMG1-203ENST00000532700 RSF1Q96T23 1441 aaPredicted RBP33.7■■■□□ 2.98
SMG1-203ENST00000532700 LAMC3Q9Y6N6 1575 aa33.68■■■□□ 2.98
SMG1-203ENST00000532700 CUX2O14529 1486 aa33.64■■■□□ 2.98
SMG1-203ENST00000532700 KIF21AQ7Z4S6 1674 aa33.62■■■□□ 2.97
SMG1-203ENST00000532700 THOC2Q8NI27 1593 aaKnown RBP33.59■■■□□ 2.97
SMG1-203ENST00000532700 TOP2AP11388 1531 aaKnown RBP33.48■■■□□ 2.95
SMG1-203ENST00000532700 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
SMG1-203ENST00000532700 PDS5BQ9NTI5 1447 aa33.36■■■□□ 2.93
SMG1-203ENST00000532700 CFTRP13569 1480 aa33.21■■■□□ 2.91
SMG1-203ENST00000532700 MRC2Q9UBG0 1479 aa33.18■■■□□ 2.9
SMG1-203ENST00000532700 DNAJC5Q9H3Z4 198 aa33.17■■■□□ 2.9
SMG1-203ENST00000532700 WDR62O43379 1518 aa33.13■■■□□ 2.89
SMG1-203ENST00000532700 FANCD2Q9BXW9 1451 aa33.13■■■□□ 2.89
SMG1-203ENST00000532700 CEP164Q9UPV0 1460 aa33.11■■■□□ 2.89
SMG1-203ENST00000532700 CCDC88BA6NC98 1476 aa33.1■■■□□ 2.89
SMG1-203ENST00000532700 PRDM2Q13029 1718 aa33.03■■■□□ 2.88
SMG1-203ENST00000532700 URB2Q14146 1524 aaKnown RBP32.93■■■□□ 2.86
SMG1-203ENST00000532700 TOPBP1Q92547 1522 aa32.59■■■□□ 2.81
SMG1-203ENST00000532700 DNMBPQ6XZF7 1577 aa32.49■■■□□ 2.79
SMG1-203ENST00000532700 ZNF608Q9ULD9 1512 aaPredicted RBP32.46■■■□□ 2.79
SMG1-203ENST00000532700 SUPT5HO00267 1087 aaKnown RBP32.43■■■□□ 2.78
SMG1-203ENST00000532700 IFT140Q96RY7 1462 aa32.4■■■□□ 2.78
SMG1-203ENST00000532700 ABCC8Q09428 1581 aa32.36■■■□□ 2.77
SMG1-203ENST00000532700 TARBP1Q13395 1621 aaKnown RBP32.33■■■□□ 2.77
SMG1-203ENST00000532700 EIF4G3O43432 1585 aaKnown RBP32.32■■■□□ 2.76
SMG1-203ENST00000532700 POLA1P09884 1462 aaPredicted RBP32.29■■■□□ 2.76
SMG1-203ENST00000532700 CUX1P39880 1505 aa32.23■■■□□ 2.75
SMG1-203ENST00000532700 RAD54L2Q9Y4B4 1467 aa32.2■■■□□ 2.75
SMG1-203ENST00000532700 AQRO60306 1485 aaKnown RBP eCLIP32.16■■■□□ 2.74
SMG1-203ENST00000532700 FGD5Q6ZNL6 1462 aa32.15■■■□□ 2.74
SMG1-203ENST00000532700 OSCARQ8IYS5 282 aa32.09■■■□□ 2.73
SMG1-203ENST00000532700 SOGA1O94964 1423 aa32.05■■■□□ 2.72
SMG1-203ENST00000532700 CHD1O14646 1710 aa32.04■■■□□ 2.72
SMG1-203ENST00000532700 WDR97A6NE52 1622 aa32.01■■■□□ 2.72
SMG1-203ENST00000532700 TDRD9Q8NDG6 1382 aaKnown RBP32■■■□□ 2.71
SMG1-203ENST00000532700 TRIM41Q8WV44 630 aa31.92■■■□□ 2.7
SMG1-203ENST00000532700 RIMBP3CA6NJZ7 1639 aa31.87■■■□□ 2.69
SMG1-203ENST00000532700 RIMBP3BA6NNM3 1639 aa31.87■■■□□ 2.69
SMG1-203ENST00000532700 RIMBP3Q9UFD9 1639 aa31.87■■■□□ 2.69
SMG1-203ENST00000532700 SNAPC4Q5SXM2 1469 aa31.84■■■□□ 2.69
SMG1-203ENST00000532700 SYNJ1O43426 1573 aa31.84■■■□□ 2.69
SMG1-203ENST00000532700 BIVM-ERCC5R4GMW8 1640 aa31.81■■■□□ 2.68
SMG1-203ENST00000532700 PBRM1Q86U86 1689 aa31.8■■■□□ 2.68
SMG1-203ENST00000532700 TOP2BQ02880 1626 aa31.77■■■□□ 2.68
SMG1-203ENST00000532700 ABCA5Q8WWZ7 1642 aa31.77■■■□□ 2.68
SMG1-203ENST00000532700 ARHGEF11O15085 1522 aa31.76■■■□□ 2.68
SMG1-203ENST00000532700 ABCA10Q8WWZ4 1543 aa31.75■■■□□ 2.67
SMG1-203ENST00000532700 FBLN2P98095 1184 aa31.74■■■□□ 2.67
SMG1-203ENST00000532700 GRIN2BQ13224 1484 aa31.73■■■□□ 2.67
SMG1-203ENST00000532700 WRNQ14191 1432 aaPredicted RBP eCLIP31.72■■■□□ 2.67
SMG1-203ENST00000532700 GAPVD1Q14C86 1478 aa31.7■■■□□ 2.66
SMG1-203ENST00000532700 MAGI1Q96QZ7 1491 aaPredicted RBP31.69■■■□□ 2.66
SMG1-203ENST00000532700 CLASP1Q7Z460 1538 aa31.62■■■□□ 2.65
SMG1-203ENST00000532700 SYNJ2O15056 1496 aa31.6■■■□□ 2.65
SMG1-203ENST00000532700 CHMP7Q8WUX9 453 aaPredicted RBP31.53■■■□□ 2.64
SMG1-203ENST00000532700 ARAP1Q96P48 1450 aa31.52■■■□□ 2.64
SMG1-203ENST00000532700 ADAMTS12P58397 1594 aa31.49■■■□□ 2.63
SMG1-203ENST00000532700 CYB5RLQ6IPT4 315 aa31.39■■■□□ 2.62
SMG1-203ENST00000532700 GRIN2AQ12879 1464 aa31.38■■■□□ 2.61
SMG1-203ENST00000532700 CEP170Q5SW79 1584 aa31.35■■■□□ 2.61
SMG1-203ENST00000532700 ERICH3Q5RHP9 1530 aa31.34■■■□□ 2.61
SMG1-203ENST00000532700 FHAD1B1AJZ9 1412 aa31.28■■■□□ 2.6
SMG1-203ENST00000532700 ERCC6L2Q5T890 1561 aa31.26■■■□□ 2.6
SMG1-203ENST00000532700 NUP160Q12769 1436 aa31.26■■■□□ 2.6
SMG1-203ENST00000532700 SHROOM2Q13796 1616 aa31.16■■■□□ 2.58
SMG1-203ENST00000532700 RUSC2Q8N2Y8 1516 aa31.06■■■□□ 2.56
SMG1-203ENST00000532700 IGF1RP08069 1367 aa31.04■■■□□ 2.56
SMG1-203ENST00000532700 KIF27Q86VH2 1401 aa31.02■■■□□ 2.56
SMG1-203ENST00000532700 CUL7Q14999 1698 aa30.99■■■□□ 2.55
SMG1-203ENST00000532700 PRG4Q92954 1404 aaPredicted RBP30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms