RNA–Protein interactions for RNA: ENST00000532699.1

SDHD-213, Transcript of succinate dehydrogenase complex subunit D, humanhuman

TSL 3

Gene SDHD, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHD-213ENST00000532699 NISCHQ9Y2I1 1504 aa31.66■■■□□ 2.66
SDHD-213ENST00000532699 CCDC180Q9P1Z9 1646 aa28.4■■■□□ 2.14
SDHD-213ENST00000532699 ABCC9O60706 1549 aa28.21■■■□□ 2.11
SDHD-213ENST00000532699 RB1CC1Q8TDY2 1594 aa26.88■■□□□ 1.89
SDHD-213ENST00000532699 NACADO15069 1562 aa26.73■■□□□ 1.87
SDHD-213ENST00000532699 UNC13AQ9UPW8 1703 aa26.57■■□□□ 1.84
SDHD-213ENST00000532699 DCAF8L2P0C7V8 631 aa26.46■■□□□ 1.83
SDHD-213ENST00000532699 DNAJC5BQ9UF47 199 aa26.44■■□□□ 1.82
SDHD-213ENST00000532699 MYO15BQ96JP2 1530 aa26.41■■□□□ 1.82
SDHD-213ENST00000532699 ZCCHC6Q5VYS8 1495 aaKnown RBP26.29■■□□□ 1.8
SDHD-213ENST00000532699 BICRAQ9NZM4 1560 aa26.26■■□□□ 1.79
SDHD-213ENST00000532699 PABPN1Q86U42 306 aaKnown RBP eCLIP26.24■■□□□ 1.79
SDHD-213ENST00000532699 DCAF1Q9Y4B6 1507 aa26.14■■□□□ 1.78
SDHD-213ENST00000532699 SCRIBQ14160 1630 aa25.88■■□□□ 1.73
SDHD-213ENST00000532699 SHROOM4Q9ULL8 1493 aa25.71■■□□□ 1.71
SDHD-213ENST00000532699 CC2D2AQ9P2K1 1620 aa25.55■■□□□ 1.68
SDHD-213ENST00000532699 EIF4G1Q04637 1599 aaKnown RBP25.51■■□□□ 1.67
SDHD-213ENST00000532699 CECR2Q9BXF3 1484 aa25.36■■□□□ 1.65
SDHD-213ENST00000532699 SMARCA4P51532 1647 aa24.71■■□□□ 1.55
SDHD-213ENST00000532699 NCAPD3P42695 1498 aa24.68■■□□□ 1.54
SDHD-213ENST00000532699 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
SDHD-213ENST00000532699 SMARCA2P51531 1590 aa24.54■■□□□ 1.52
SDHD-213ENST00000532699 HMGXB3Q12766 1538 aa24.53■■□□□ 1.52
SDHD-213ENST00000532699 BAZ1AQ9NRL2 1556 aaPredicted RBP24.51■■□□□ 1.51
SDHD-213ENST00000532699 PEG3Q9GZU2 1588 aa24.47■■□□□ 1.51
SDHD-213ENST00000532699 MROH2BQ7Z745 1585 aa24.45■■□□□ 1.5
SDHD-213ENST00000532699 BAZ1BQ9UIG0 1483 aaKnown RBP24.36■■□□□ 1.49
SDHD-213ENST00000532699 NESP48681 1621 aa24.34■■□□□ 1.49
SDHD-213ENST00000532699 ERCC6Q03468 1493 aa24.23■■□□□ 1.47
SDHD-213ENST00000532699 WIZO95785 1651 aa24.21■■□□□ 1.47
SDHD-213ENST00000532699 CUX2O14529 1486 aa24.19■■□□□ 1.46
SDHD-213ENST00000532699 LAMC3Q9Y6N6 1575 aa24.12■■□□□ 1.45
SDHD-213ENST00000532699 THOC2Q8NI27 1593 aaKnown RBP24.11■■□□□ 1.45
SDHD-213ENST00000532699 KIF21AQ7Z4S6 1674 aa24.11■■□□□ 1.45
SDHD-213ENST00000532699 DNAJC5Q9H3Z4 198 aa24.04■■□□□ 1.44
SDHD-213ENST00000532699 RSF1Q96T23 1441 aaPredicted RBP23.93■■□□□ 1.42
SDHD-213ENST00000532699 CADPSQ9ULU8 1353 aa23.89■■□□□ 1.41
SDHD-213ENST00000532699 PDS5BQ9NTI5 1447 aa23.86■■□□□ 1.41
SDHD-213ENST00000532699 TOP2AP11388 1531 aaKnown RBP23.81■■□□□ 1.4
SDHD-213ENST00000532699 MRC2Q9UBG0 1479 aa23.73■■□□□ 1.39
SDHD-213ENST00000532699 WDR62O43379 1518 aa23.73■■□□□ 1.39
SDHD-213ENST00000532699 CFTRP13569 1480 aa23.7■■□□□ 1.38
SDHD-213ENST00000532699 PRDM2Q13029 1718 aa23.65■■□□□ 1.38
SDHD-213ENST00000532699 FANCD2Q9BXW9 1451 aa23.65■■□□□ 1.38
SDHD-213ENST00000532699 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.38
SDHD-213ENST00000532699 CCDC88BA6NC98 1476 aa23.55■■□□□ 1.36
SDHD-213ENST00000532699 URB2Q14146 1524 aaKnown RBP23.54■■□□□ 1.36
SDHD-213ENST00000532699 TOPBP1Q92547 1522 aa23.26■■□□□ 1.31
SDHD-213ENST00000532699 ZNF608Q9ULD9 1512 aaPredicted RBP23.22■■□□□ 1.31
SDHD-213ENST00000532699 DNMBPQ6XZF7 1577 aa23.18■■□□□ 1.3
SDHD-213ENST00000532699 IFT140Q96RY7 1462 aa23.16■■□□□ 1.3
SDHD-213ENST00000532699 TARBP1Q13395 1621 aaKnown RBP23.13■■□□□ 1.29
SDHD-213ENST00000532699 EIF4G3O43432 1585 aaKnown RBP23.1■■□□□ 1.29
SDHD-213ENST00000532699 ABCC8Q09428 1581 aa23.1■■□□□ 1.29
SDHD-213ENST00000532699 POLA1P09884 1462 aaPredicted RBP23.04■■□□□ 1.28
SDHD-213ENST00000532699 OSCARQ8IYS5 282 aa23.03■■□□□ 1.28
SDHD-213ENST00000532699 TRIM41Q8WV44 630 aa22.98■■□□□ 1.27
SDHD-213ENST00000532699 CHD1O14646 1710 aa22.98■■□□□ 1.27
SDHD-213ENST00000532699 AQRO60306 1485 aaKnown RBP eCLIP22.97■■□□□ 1.277e-7■■□□□ 14.1
SDHD-213ENST00000532699 RAD54L2Q9Y4B4 1467 aa22.96■■□□□ 1.27
SDHD-213ENST00000532699 CUX1P39880 1505 aa22.96■■□□□ 1.27
SDHD-213ENST00000532699 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
SDHD-213ENST00000532699 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
SDHD-213ENST00000532699 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
SDHD-213ENST00000532699 FGD5Q6ZNL6 1462 aa22.89■■□□□ 1.25
SDHD-213ENST00000532699 WDR97A6NE52 1622 aa22.87■■□□□ 1.25
SDHD-213ENST00000532699 SOGA1O94964 1423 aa22.85■■□□□ 1.25
SDHD-213ENST00000532699 SUPT5HO00267 1087 aaKnown RBP22.84■■□□□ 1.25
SDHD-213ENST00000532699 TDRD9Q8NDG6 1382 aaKnown RBP22.81■■□□□ 1.24
SDHD-213ENST00000532699 ARHGEF11O15085 1522 aa22.81■■□□□ 1.24
SDHD-213ENST00000532699 PBRM1Q86U86 1689 aa22.74■■□□□ 1.23
SDHD-213ENST00000532699 SNAPC4Q5SXM2 1469 aa22.73■■□□□ 1.23
SDHD-213ENST00000532699 ABCA5Q8WWZ7 1642 aa22.68■■□□□ 1.22
SDHD-213ENST00000532699 CLASP1Q7Z460 1538 aa22.66■■□□□ 1.22
SDHD-213ENST00000532699 BIVM-ERCC5R4GMW8 1640 aa22.65■■□□□ 1.22
SDHD-213ENST00000532699 ABCA10Q8WWZ4 1543 aa22.64■■□□□ 1.21
SDHD-213ENST00000532699 GRIN2BQ13224 1484 aa22.64■■□□□ 1.21
SDHD-213ENST00000532699 MAGI1Q96QZ7 1491 aaPredicted RBP22.64■■□□□ 1.21
SDHD-213ENST00000532699 FBLN2P98095 1184 aa22.63■■□□□ 1.21
SDHD-213ENST00000532699 SYNJ1O43426 1573 aa22.63■■□□□ 1.21
SDHD-213ENST00000532699 ARAP1Q96P48 1450 aa22.62■■□□□ 1.21
SDHD-213ENST00000532699 TOP2BQ02880 1626 aa22.6■■□□□ 1.21
SDHD-213ENST00000532699 GAPVD1Q14C86 1478 aa22.6■■□□□ 1.21
SDHD-213ENST00000532699 SYNJ2O15056 1496 aa22.57■■□□□ 1.2
SDHD-213ENST00000532699 CYB5RLQ6IPT4 315 aa22.52■■□□□ 1.2
SDHD-213ENST00000532699 WRNQ14191 1432 aaPredicted RBP eCLIP22.5■■□□□ 1.19
SDHD-213ENST00000532699 CHMP7Q8WUX9 453 aaPredicted RBP22.49■■□□□ 1.19
SDHD-213ENST00000532699 ADAMTS12P58397 1594 aa22.46■■□□□ 1.19
SDHD-213ENST00000532699 CEP170Q5SW79 1584 aa22.4■■□□□ 1.18
SDHD-213ENST00000532699 GRIN2AQ12879 1464 aa22.39■■□□□ 1.17
SDHD-213ENST00000532699 ERCC6L2Q5T890 1561 aa22.38■■□□□ 1.17
SDHD-213ENST00000532699 ERICH3Q5RHP9 1530 aa22.34■■□□□ 1.17
SDHD-213ENST00000532699 NUP160Q12769 1436 aa22.33■■□□□ 1.17
SDHD-213ENST00000532699 SHROOM2Q13796 1616 aa22.31■■□□□ 1.16
SDHD-213ENST00000532699 FHAD1B1AJZ9 1412 aa22.29■■□□□ 1.16
SDHD-213ENST00000532699 RUSC2Q8N2Y8 1516 aa22.16■■□□□ 1.14
SDHD-213ENST00000532699 TRHP20396 242 aaPredicted RBP22.14■■□□□ 1.13
SDHD-213ENST00000532699 IGF1RP08069 1367 aa22.08■■□□□ 1.12
SDHD-213ENST00000532699 CUL7Q14999 1698 aa22.07■■□□□ 1.12
SDHD-213ENST00000532699 PRG4Q92954 1404 aaPredicted RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 358.8 ms