RNA–Protein interactions for RNA: ENST00000532600.1

SSH3-209, Transcript of slingshot protein phosphatase 3, humanhuman

TSL 4

Gene SSH3, Length 555 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH3-209ENST00000532600 NISCHQ9Y2I1 1504 aa47.21■■■■■ 5.15
SSH3-209ENST00000532600 CCDC180Q9P1Z9 1646 aa42.19■■■■■ 4.34
SSH3-209ENST00000532600 ABCC9O60706 1549 aa41.84■■■■■ 4.29
SSH3-209ENST00000532600 RB1CC1Q8TDY2 1594 aa39.94■■■■□ 3.98
SSH3-209ENST00000532600 NACADO15069 1562 aa39.77■■■■□ 3.96
SSH3-209ENST00000532600 DCAF8L2P0C7V8 631 aa39.57■■■■□ 3.93
SSH3-209ENST00000532600 MYO15BQ96JP2 1530 aa39.36■■■■□ 3.89
SSH3-209ENST00000532600 ZCCHC6Q5VYS8 1495 aaKnown RBP39.23■■■■□ 3.87
SSH3-209ENST00000532600 UNC13AQ9UPW8 1703 aa39.15■■■■□ 3.86
SSH3-209ENST00000532600 PABPN1Q86U42 306 aaKnown RBP eCLIP39.01■■■■□ 3.84
SSH3-209ENST00000532600 DNAJC5BQ9UF47 199 aa39.01■■■■□ 3.84
SSH3-209ENST00000532600 DCAF1Q9Y4B6 1507 aa39■■■■□ 3.83
SSH3-209ENST00000532600 BICRAQ9NZM4 1560 aa38.9■■■■□ 3.82
SSH3-209ENST00000532600 SCRIBQ14160 1630 aa38.49■■■■□ 3.75
SSH3-209ENST00000532600 SHROOM4Q9ULL8 1493 aa38.28■■■■□ 3.72
SSH3-209ENST00000532600 EIF4G1Q04637 1599 aaKnown RBP37.84■■■■□ 3.65
SSH3-209ENST00000532600 CC2D2AQ9P2K1 1620 aa37.83■■■■□ 3.65
SSH3-209ENST00000532600 CECR2Q9BXF3 1484 aa37.64■■■■□ 3.62
SSH3-209ENST00000532600 SMARCA4P51532 1647 aa36.75■■■■□ 3.47
SSH3-209ENST00000532600 NCAPD3P42695 1498 aa36.74■■■■□ 3.47
SSH3-209ENST00000532600 ATAD2BQ9ULI0 1458 aa36.69■■■■□ 3.46
SSH3-209ENST00000532600 BAZ1AQ9NRL2 1556 aaPredicted RBP36.57■■■■□ 3.45
SSH3-209ENST00000532600 SMARCA2P51531 1590 aa36.56■■■■□ 3.44
SSH3-209ENST00000532600 HMGXB3Q12766 1538 aa36.49■■■■□ 3.43
SSH3-209ENST00000532600 MROH2BQ7Z745 1585 aa36.42■■■■□ 3.42
SSH3-209ENST00000532600 PEG3Q9GZU2 1588 aa36.4■■■■□ 3.42
SSH3-209ENST00000532600 BAZ1BQ9UIG0 1483 aaKnown RBP36.31■■■■□ 3.4
SSH3-209ENST00000532600 NESP48681 1621 aa36.1■■■■□ 3.37
SSH3-209ENST00000532600 ERCC6Q03468 1493 aa36.01■■■■□ 3.36
SSH3-209ENST00000532600 WIZO95785 1651 aa36■■■■□ 3.35
SSH3-209ENST00000532600 CUX2O14529 1486 aa35.86■■■■□ 3.33
SSH3-209ENST00000532600 LAMC3Q9Y6N6 1575 aa35.82■■■■□ 3.32
SSH3-209ENST00000532600 RSF1Q96T23 1441 aaPredicted RBP35.78■■■■□ 3.32
SSH3-209ENST00000532600 THOC2Q8NI27 1593 aaKnown RBP35.65■■■■□ 3.3
SSH3-209ENST00000532600 KIF21AQ7Z4S6 1674 aa35.63■■■■□ 3.29
SSH3-209ENST00000532600 CADPSQ9ULU8 1353 aa35.62■■■■□ 3.29
SSH3-209ENST00000532600 PDS5BQ9NTI5 1447 aa35.56■■■■□ 3.28
SSH3-209ENST00000532600 TOP2AP11388 1531 aaKnown RBP35.53■■■■□ 3.28
SSH3-209ENST00000532600 DNAJC5Q9H3Z4 198 aa35.45■■■■□ 3.27
SSH3-209ENST00000532600 CFTRP13569 1480 aa35.32■■■■□ 3.24
SSH3-209ENST00000532600 MRC2Q9UBG0 1479 aa35.29■■■■□ 3.24
SSH3-209ENST00000532600 WDR62O43379 1518 aa35.22■■■■□ 3.23
SSH3-209ENST00000532600 FANCD2Q9BXW9 1451 aa35.22■■■■□ 3.23
SSH3-209ENST00000532600 CEP164Q9UPV0 1460 aa35.2■■■■□ 3.23
SSH3-209ENST00000532600 CCDC88BA6NC98 1476 aa35.14■■■■□ 3.22
SSH3-209ENST00000532600 PRDM2Q13029 1718 aa34.99■■■■□ 3.19
SSH3-209ENST00000532600 URB2Q14146 1524 aaKnown RBP34.96■■■■□ 3.19
SSH3-209ENST00000532600 TOPBP1Q92547 1522 aa34.62■■■■□ 3.13
SSH3-209ENST00000532600 DNMBPQ6XZF7 1577 aa34.51■■■■□ 3.12
SSH3-209ENST00000532600 IFT140Q96RY7 1462 aa34.49■■■■□ 3.11
SSH3-209ENST00000532600 ZNF608Q9ULD9 1512 aaPredicted RBP34.48■■■■□ 3.11
SSH3-209ENST00000532600 ABCC8Q09428 1581 aa34.48■■■■□ 3.11
SSH3-209ENST00000532600 SUPT5HO00267 1087 aaKnown RBP34.38■■■■□ 3.09
SSH3-209ENST00000532600 TARBP1Q13395 1621 aaKnown RBP34.32■■■■□ 3.08
SSH3-209ENST00000532600 POLA1P09884 1462 aaPredicted RBP34.29■■■■□ 3.08
SSH3-209ENST00000532600 EIF4G3O43432 1585 aaKnown RBP34.28■■■■□ 3.08
SSH3-209ENST00000532600 OSCARQ8IYS5 282 aa34.25■■■■□ 3.07
SSH3-209ENST00000532600 CUX1P39880 1505 aa34.19■■■■□ 3.06
SSH3-209ENST00000532600 AQRO60306 1485 aaKnown RBP eCLIP34.18■■■■□ 3.06
SSH3-209ENST00000532600 RAD54L2Q9Y4B4 1467 aa34.18■■■■□ 3.06
SSH3-209ENST00000532600 FGD5Q6ZNL6 1462 aa34.13■■■■□ 3.05
SSH3-209ENST00000532600 SOGA1O94964 1423 aa34.1■■■■□ 3.05
SSH3-209ENST00000532600 TDRD9Q8NDG6 1382 aaKnown RBP34.01■■■■□ 3.04
SSH3-209ENST00000532600 TRIM41Q8WV44 630 aa34■■■■□ 3.03
SSH3-209ENST00000532600 CHD1O14646 1710 aa33.96■■■■□ 3.03
SSH3-209ENST00000532600 WDR97A6NE52 1622 aa33.91■■■■□ 3.02
SSH3-209ENST00000532600 RIMBP3CA6NJZ7 1639 aa33.86■■■■□ 3.01
SSH3-209ENST00000532600 RIMBP3BA6NNM3 1639 aa33.86■■■■□ 3.01
SSH3-209ENST00000532600 RIMBP3Q9UFD9 1639 aa33.86■■■■□ 3.01
SSH3-209ENST00000532600 SNAPC4Q5SXM2 1469 aa33.83■■■■□ 3.01
SSH3-209ENST00000532600 ARHGEF11O15085 1522 aa33.78■■■■□ 3
SSH3-209ENST00000532600 FBLN2P98095 1184 aa33.77■■■■□ 3
SSH3-209ENST00000532600 GRIN2BQ13224 1484 aa33.76■■■□□ 2.99
SSH3-209ENST00000532600 ABCA10Q8WWZ4 1543 aa33.75■■■□□ 2.99
SSH3-209ENST00000532600 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
SSH3-209ENST00000532600 BIVM-ERCC5R4GMW8 1640 aa33.72■■■□□ 2.99
SSH3-209ENST00000532600 MAGI1Q96QZ7 1491 aaPredicted RBP33.72■■■□□ 2.99
SSH3-209ENST00000532600 TOP2BQ02880 1626 aa33.71■■■□□ 2.99
SSH3-209ENST00000532600 ABCA5Q8WWZ7 1642 aa33.71■■■□□ 2.99
SSH3-209ENST00000532600 PBRM1Q86U86 1689 aa33.7■■■□□ 2.99
SSH3-209ENST00000532600 GAPVD1Q14C86 1478 aa33.69■■■□□ 2.98
SSH3-209ENST00000532600 WRNQ14191 1432 aaPredicted RBP eCLIP33.69■■■□□ 2.98
SSH3-209ENST00000532600 SYNJ2O15056 1496 aa33.61■■■□□ 2.97
SSH3-209ENST00000532600 CLASP1Q7Z460 1538 aa33.59■■■□□ 2.97
SSH3-209ENST00000532600 CHMP7Q8WUX9 453 aaPredicted RBP33.59■■■□□ 2.97
SSH3-209ENST00000532600 ARAP1Q96P48 1450 aa33.5■■■□□ 2.95
SSH3-209ENST00000532600 CYB5RLQ6IPT4 315 aa33.45■■■□□ 2.95
SSH3-209ENST00000532600 ADAMTS12P58397 1594 aa33.41■■■□□ 2.94
SSH3-209ENST00000532600 GRIN2AQ12879 1464 aa33.35■■■□□ 2.93
SSH3-209ENST00000532600 ERICH3Q5RHP9 1530 aa33.32■■■□□ 2.92
SSH3-209ENST00000532600 FHAD1B1AJZ9 1412 aa33.28■■■□□ 2.92
SSH3-209ENST00000532600 CEP170Q5SW79 1584 aa33.26■■■□□ 2.91
SSH3-209ENST00000532600 NUP160Q12769 1436 aa33.25■■■□□ 2.91
SSH3-209ENST00000532600 ERCC6L2Q5T890 1561 aa33.15■■■□□ 2.9
SSH3-209ENST00000532600 SHROOM2Q13796 1616 aa33.08■■■□□ 2.89
SSH3-209ENST00000532600 IGF1RP08069 1367 aa33■■■□□ 2.87
SSH3-209ENST00000532600 KIF27Q86VH2 1401 aa32.99■■■□□ 2.87
SSH3-209ENST00000532600 RUSC2Q8N2Y8 1516 aa32.93■■■□□ 2.86
SSH3-209ENST00000532600 CUL7Q14999 1698 aa32.89■■■□□ 2.86
SSH3-209ENST00000532600 TRHP20396 242 aaPredicted RBP32.89■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms