RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 NISCHQ9Y2I1 1504 aa42.21■■■■■ 4.35
PHRF1-204ENST00000532550 CCDC180Q9P1Z9 1646 aa37.62■■■■□ 3.61
PHRF1-204ENST00000532550 ABCC9O60706 1549 aa37.26■■■■□ 3.56
PHRF1-204ENST00000532550 RB1CC1Q8TDY2 1594 aa35.65■■■■□ 3.3
PHRF1-204ENST00000532550 DCAF8L2P0C7V8 631 aa35.63■■■■□ 3.29
PHRF1-204ENST00000532550 NACADO15069 1562 aa35.52■■■■□ 3.28
PHRF1-204ENST00000532550 MYO15BQ96JP2 1530 aa35.16■■■■□ 3.22
PHRF1-204ENST00000532550 ZCCHC6Q5VYS8 1495 aaKnown RBP35.03■■■■□ 3.2
PHRF1-204ENST00000532550 DCAF1Q9Y4B6 1507 aa34.87■■■■□ 3.17
PHRF1-204ENST00000532550 PABPN1Q86U42 306 aaKnown RBP eCLIP34.83■■■■□ 3.17
PHRF1-204ENST00000532550 UNC13AQ9UPW8 1703 aa34.78■■■■□ 3.16
PHRF1-204ENST00000532550 DNAJC5BQ9UF47 199 aa34.57■■■■□ 3.12
PHRF1-204ENST00000532550 BICRAQ9NZM4 1560 aa34.53■■■■□ 3.12
PHRF1-204ENST00000532550 SCRIBQ14160 1630 aa34.34■■■■□ 3.09
PHRF1-204ENST00000532550 SHROOM4Q9ULL8 1493 aa34.14■■■■□ 3.06
PHRF1-204ENST00000532550 EIF4G1Q04637 1599 aaKnown RBP33.68■■■□□ 2.98
PHRF1-204ENST00000532550 CC2D2AQ9P2K1 1620 aa33.64■■■□□ 2.98
PHRF1-204ENST00000532550 CECR2Q9BXF3 1484 aa33.52■■■□□ 2.96
PHRF1-204ENST00000532550 SMARCA4P51532 1647 aa32.8■■■□□ 2.84
PHRF1-204ENST00000532550 NCAPD3P42695 1498 aa32.8■■■□□ 2.84
PHRF1-204ENST00000532550 ATAD2BQ9ULI0 1458 aa32.75■■■□□ 2.83
PHRF1-204ENST00000532550 BAZ1AQ9NRL2 1556 aaPredicted RBP32.74■■■□□ 2.83
PHRF1-204ENST00000532550 SMARCA2P51531 1590 aa32.69■■■□□ 2.82
PHRF1-204ENST00000532550 HMGXB3Q12766 1538 aa32.55■■■□□ 2.8
PHRF1-204ENST00000532550 MROH2BQ7Z745 1585 aa32.52■■■□□ 2.8
PHRF1-204ENST00000532550 BAZ1BQ9UIG0 1483 aaKnown RBP32.48■■■□□ 2.79
PHRF1-204ENST00000532550 PEG3Q9GZU2 1588 aa32.47■■■□□ 2.79
PHRF1-204ENST00000532550 ERCC6Q03468 1493 aa32.17■■■□□ 2.74
PHRF1-204ENST00000532550 WIZO95785 1651 aa32.15■■■□□ 2.74
PHRF1-204ENST00000532550 NESP48681 1621 aa32.11■■■□□ 2.73
PHRF1-204ENST00000532550 RSF1Q96T23 1441 aaPredicted RBP32.05■■■□□ 2.72
PHRF1-204ENST00000532550 LAMC3Q9Y6N6 1575 aa31.97■■■□□ 2.71
PHRF1-204ENST00000532550 CUX2O14529 1486 aa31.91■■■□□ 2.7
PHRF1-204ENST00000532550 CADPSQ9ULU8 1353 aa31.86■■■□□ 2.69
PHRF1-204ENST00000532550 PDS5BQ9NTI5 1447 aa31.83■■■□□ 2.69
PHRF1-204ENST00000532550 TOP2AP11388 1531 aaKnown RBP31.77■■■□□ 2.68
PHRF1-204ENST00000532550 KIF21AQ7Z4S6 1674 aa31.69■■■□□ 2.66
PHRF1-204ENST00000532550 THOC2Q8NI27 1593 aaKnown RBP31.63■■■□□ 2.65
PHRF1-204ENST00000532550 CFTRP13569 1480 aa31.55■■■□□ 2.64
PHRF1-204ENST00000532550 MRC2Q9UBG0 1479 aa31.47■■■□□ 2.63
PHRF1-204ENST00000532550 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
PHRF1-204ENST00000532550 CCDC88BA6NC98 1476 aa31.46■■■□□ 2.63
PHRF1-204ENST00000532550 DNAJC5Q9H3Z4 198 aa31.45■■■□□ 2.63
PHRF1-204ENST00000532550 CEP164Q9UPV0 1460 aa31.45■■■□□ 2.62
PHRF1-204ENST00000532550 WDR62O43379 1518 aa31.34■■■□□ 2.61
PHRF1-204ENST00000532550 PRDM2Q13029 1718 aa31.21■■■□□ 2.59
PHRF1-204ENST00000532550 URB2Q14146 1524 aaKnown RBP31.14■■■□□ 2.58
PHRF1-204ENST00000532550 SUPT5HO00267 1087 aaKnown RBP31.1■■■□□ 2.57
PHRF1-204ENST00000532550 ABCC8Q09428 1581 aa30.92■■■□□ 2.54
PHRF1-204ENST00000532550 TOPBP1Q92547 1522 aa30.9■■■□□ 2.54
PHRF1-204ENST00000532550 DNMBPQ6XZF7 1577 aa30.82■■■□□ 2.52
PHRF1-204ENST00000532550 IFT140Q96RY7 1462 aa30.82■■■□□ 2.52
PHRF1-204ENST00000532550 ZNF608Q9ULD9 1512 aaPredicted RBP30.69■■■□□ 2.5
PHRF1-204ENST00000532550 OSCARQ8IYS5 282 aa30.66■■■□□ 2.5
PHRF1-204ENST00000532550 POLA1P09884 1462 aaPredicted RBP30.62■■■□□ 2.49
PHRF1-204ENST00000532550 TARBP1Q13395 1621 aaKnown RBP30.56■■■□□ 2.48
PHRF1-204ENST00000532550 SOGA1O94964 1423 aa30.56■■■□□ 2.48
PHRF1-204ENST00000532550 AQRO60306 1485 aaKnown RBP eCLIP30.52■■■□□ 2.486e-7■■■■■ 39.6
PHRF1-204ENST00000532550 CUX1P39880 1505 aa30.52■■■□□ 2.48
PHRF1-204ENST00000532550 RAD54L2Q9Y4B4 1467 aa30.51■■■□□ 2.48
PHRF1-204ENST00000532550 EIF4G3O43432 1585 aaKnown RBP30.51■■■□□ 2.47
PHRF1-204ENST00000532550 FGD5Q6ZNL6 1462 aa30.5■■■□□ 2.47
PHRF1-204ENST00000532550 TDRD9Q8NDG6 1382 aaKnown RBP30.43■■■□□ 2.46
PHRF1-204ENST00000532550 FBLN2P98095 1184 aa30.34■■■□□ 2.45
PHRF1-204ENST00000532550 TRIM41Q8WV44 630 aa30.3■■■□□ 2.44
PHRF1-204ENST00000532550 WDR97A6NE52 1622 aa30.29■■■□□ 2.44
PHRF1-204ENST00000532550 WRNQ14191 1432 aaPredicted RBP eCLIP30.24■■■□□ 2.43
PHRF1-204ENST00000532550 CHD1O14646 1710 aa30.21■■■□□ 2.43
PHRF1-204ENST00000532550 GRIN2BQ13224 1484 aa30.19■■■□□ 2.42
PHRF1-204ENST00000532550 CHMP7Q8WUX9 453 aaPredicted RBP30.18■■■□□ 2.42
PHRF1-204ENST00000532550 SNAPC4Q5SXM2 1469 aa30.18■■■□□ 2.42
PHRF1-204ENST00000532550 ABCA10Q8WWZ4 1543 aa30.17■■■□□ 2.42
PHRF1-204ENST00000532550 TOP2BQ02880 1626 aa30.16■■■□□ 2.42
PHRF1-204ENST00000532550 GAPVD1Q14C86 1478 aa30.16■■■□□ 2.42
PHRF1-204ENST00000532550 BIVM-ERCC5R4GMW8 1640 aa30.14■■■□□ 2.41
PHRF1-204ENST00000532550 MAGI1Q96QZ7 1491 aaPredicted RBP30.13■■■□□ 2.41
PHRF1-204ENST00000532550 SYNJ1O43426 1573 aa30.11■■■□□ 2.41
PHRF1-204ENST00000532550 RIMBP3CA6NJZ7 1639 aa30.06■■■□□ 2.4
PHRF1-204ENST00000532550 RIMBP3BA6NNM3 1639 aa30.06■■■□□ 2.4
PHRF1-204ENST00000532550 RIMBP3Q9UFD9 1639 aa30.06■■■□□ 2.4
PHRF1-204ENST00000532550 PBRM1Q86U86 1689 aa30.04■■■□□ 2.4
PHRF1-204ENST00000532550 SYNJ2O15056 1496 aa30.04■■■□□ 2.4
PHRF1-204ENST00000532550 ABCA5Q8WWZ7 1642 aa30.03■■■□□ 2.4
PHRF1-204ENST00000532550 ARHGEF11O15085 1522 aa30.02■■■□□ 2.4
PHRF1-204ENST00000532550 CYB5RLQ6IPT4 315 aa29.91■■■□□ 2.38
PHRF1-204ENST00000532550 CLASP1Q7Z460 1538 aa29.86■■■□□ 2.37
PHRF1-204ENST00000532550 ERICH3Q5RHP9 1530 aa29.81■■■□□ 2.36
PHRF1-204ENST00000532550 FHAD1B1AJZ9 1412 aa29.79■■■□□ 2.36
PHRF1-204ENST00000532550 GRIN2AQ12879 1464 aa29.79■■■□□ 2.36
PHRF1-204ENST00000532550 ADAMTS12P58397 1594 aa29.77■■■□□ 2.36
PHRF1-204ENST00000532550 ARAP1Q96P48 1450 aa29.74■■■□□ 2.35
PHRF1-204ENST00000532550 NUP160Q12769 1436 aa29.66■■■□□ 2.34
PHRF1-204ENST00000532550 KIF27Q86VH2 1401 aa29.66■■■□□ 2.34
PHRF1-204ENST00000532550 CEP170Q5SW79 1584 aa29.62■■■□□ 2.33
PHRF1-204ENST00000532550 IGF1RP08069 1367 aa29.6■■■□□ 2.33
PHRF1-204ENST00000532550 JPH4Q96JJ6 628 aa29.48■■■□□ 2.31
PHRF1-204ENST00000532550 TRHP20396 242 aaPredicted RBP29.46■■■□□ 2.31
PHRF1-204ENST00000532550 CUL7Q14999 1698 aa29.44■■■□□ 2.3
PHRF1-204ENST00000532550 ERCC6L2Q5T890 1561 aa29.43■■■□□ 2.3
PHRF1-204ENST00000532550 SHROOM2Q13796 1616 aa29.43■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 299 ms