RNA–Protein interactions for RNA: ENST00000532367.1

SMPD1-207, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 2

Gene SMPD1, Length 409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-207ENST00000532367 NISCHQ9Y2I1 1504 aa26.27■■□□□ 1.8
SMPD1-207ENST00000532367 CCDC180Q9P1Z9 1646 aa23.05■■□□□ 1.28
SMPD1-207ENST00000532367 ZCCHC6Q5VYS8 1495 aaKnown RBP22.01■■□□□ 1.11
SMPD1-207ENST00000532367 ABCC9O60706 1549 aa21.95■■□□□ 1.1
SMPD1-207ENST00000532367 DCAF1Q9Y4B6 1507 aa21.76■■□□□ 1.07
SMPD1-207ENST00000532367 DCAF8L2P0C7V8 631 aa21.76■■□□□ 1.07
SMPD1-207ENST00000532367 MYO15BQ96JP2 1530 aa21.6■■□□□ 1.05
SMPD1-207ENST00000532367 NACADO15069 1562 aa21.53■■□□□ 1.04
SMPD1-207ENST00000532367 RB1CC1Q8TDY2 1594 aa21.4■■□□□ 1.02
SMPD1-207ENST00000532367 SHROOM4Q9ULL8 1493 aa21.2■□□□□ 0.98
SMPD1-207ENST00000532367 SCRIBQ14160 1630 aa21.1■□□□□ 0.97
SMPD1-207ENST00000532367 UNC13AQ9UPW8 1703 aa20.92■□□□□ 0.94
SMPD1-207ENST00000532367 AEBP2Q6ZN18 517 aaPredicted RBP20.81■□□□□ 0.92
SMPD1-207ENST00000532367 BICRAQ9NZM4 1560 aa20.71■□□□□ 0.91
SMPD1-207ENST00000532367 PABPN1Q86U42 306 aaKnown RBP eCLIP20.64■□□□□ 0.89
SMPD1-207ENST00000532367 CECR2Q9BXF3 1484 aa20.38■□□□□ 0.85
SMPD1-207ENST00000532367 BAZ1AQ9NRL2 1556 aaPredicted RBP20.31■□□□□ 0.84
SMPD1-207ENST00000532367 SUPT5HO00267 1087 aaKnown RBP20.31■□□□□ 0.84
SMPD1-207ENST00000532367 RSF1Q96T23 1441 aaPredicted RBP20.27■□□□□ 0.83
SMPD1-207ENST00000532367 MROH2BQ7Z745 1585 aa20.25■□□□□ 0.83
SMPD1-207ENST00000532367 SMARCA4P51532 1647 aa20.24■□□□□ 0.83
SMPD1-207ENST00000532367 EIF4G1Q04637 1599 aaKnown RBP20.12■□□□□ 0.81
SMPD1-207ENST00000532367 WIZO95785 1651 aa20.08■□□□□ 0.81
SMPD1-207ENST00000532367 PEG3Q9GZU2 1588 aa20.02■□□□□ 0.8
SMPD1-207ENST00000532367 SMARCA2P51531 1590 aa19.99■□□□□ 0.79
SMPD1-207ENST00000532367 ATAD2BQ9ULI0 1458 aa19.97■□□□□ 0.79
SMPD1-207ENST00000532367 TOP2AP11388 1531 aaKnown RBP19.89■□□□□ 0.77
SMPD1-207ENST00000532367 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
SMPD1-207ENST00000532367 NCAPD3P42695 1498 aa19.86■□□□□ 0.77
SMPD1-207ENST00000532367 BAZ1BQ9UIG0 1483 aaKnown RBP19.85■□□□□ 0.77
SMPD1-207ENST00000532367 HMGXB3Q12766 1538 aa19.81■□□□□ 0.76
SMPD1-207ENST00000532367 CCDC88BA6NC98 1476 aa19.67■□□□□ 0.74
SMPD1-207ENST00000532367 CHIC1Q5VXU3 224 aa19.65■□□□□ 0.74
SMPD1-207ENST00000532367 DNAJC5BQ9UF47 199 aa19.55■□□□□ 0.72
SMPD1-207ENST00000532367 CFTRP13569 1480 aa19.34■□□□□ 0.69
SMPD1-207ENST00000532367 CADPSQ9ULU8 1353 aa19.32■□□□□ 0.68
SMPD1-207ENST00000532367 PRDM2Q13029 1718 aa19.25■□□□□ 0.67
SMPD1-207ENST00000532367 LAMC3Q9Y6N6 1575 aa19.23■□□□□ 0.67
SMPD1-207ENST00000532367 NESP48681 1621 aa19.18■□□□□ 0.66
SMPD1-207ENST00000532367 TRIM41Q8WV44 630 aa19.16■□□□□ 0.66
SMPD1-207ENST00000532367 ABCC8Q09428 1581 aa19.15■□□□□ 0.66
SMPD1-207ENST00000532367 WRNQ14191 1432 aaPredicted RBP eCLIP19.1■□□□□ 0.65
SMPD1-207ENST00000532367 FANCD2Q9BXW9 1451 aa19.09■□□□□ 0.65
SMPD1-207ENST00000532367 PDS5BQ9NTI5 1447 aa19.09■□□□□ 0.65
SMPD1-207ENST00000532367 CEP164Q9UPV0 1460 aa19.01■□□□□ 0.63
SMPD1-207ENST00000532367 SYNJ1O43426 1573 aa19■□□□□ 0.63
SMPD1-207ENST00000532367 KIF21AQ7Z4S6 1674 aa18.98■□□□□ 0.63
SMPD1-207ENST00000532367 TOP2BQ02880 1626 aa18.97■□□□□ 0.63
SMPD1-207ENST00000532367 BIVM-ERCC5R4GMW8 1640 aa18.96■□□□□ 0.63
SMPD1-207ENST00000532367 CUX1P39880 1505 aa18.96■□□□□ 0.63
SMPD1-207ENST00000532367 DNMBPQ6XZF7 1577 aa18.89■□□□□ 0.62
SMPD1-207ENST00000532367 ERCC6Q03468 1493 aa18.87■□□□□ 0.61
SMPD1-207ENST00000532367 TOPBP1Q92547 1522 aa18.86■□□□□ 0.61
SMPD1-207ENST00000532367 URB2Q14146 1524 aaKnown RBP18.85■□□□□ 0.61
SMPD1-207ENST00000532367 MRC2Q9UBG0 1479 aa18.84■□□□□ 0.61
SMPD1-207ENST00000532367 FGD5Q6ZNL6 1462 aa18.8■□□□□ 0.6
SMPD1-207ENST00000532367 SOGA1O94964 1423 aa18.75■□□□□ 0.59
SMPD1-207ENST00000532367 FAM9AQ8IZU1 332 aaPredicted RBP18.75■□□□□ 0.59
SMPD1-207ENST00000532367 EEA1Q15075 1411 aa18.74■□□□□ 0.59
SMPD1-207ENST00000532367 WDR62O43379 1518 aa18.74■□□□□ 0.59
SMPD1-207ENST00000532367 POLA1P09884 1462 aaPredicted RBP18.74■□□□□ 0.59
SMPD1-207ENST00000532367 THOC2Q8NI27 1593 aaKnown RBP18.72■□□□□ 0.59
SMPD1-207ENST00000532367 RUSC2Q8N2Y8 1516 aa18.69■□□□□ 0.58
SMPD1-207ENST00000532367 KIF27Q86VH2 1401 aa18.66■□□□□ 0.58
SMPD1-207ENST00000532367 RAD54L2Q9Y4B4 1467 aa18.66■□□□□ 0.58
SMPD1-207ENST00000532367 ABCA10Q8WWZ4 1543 aa18.65■□□□□ 0.58
SMPD1-207ENST00000532367 CSRNP3Q8WYN3 585 aa18.65■□□□□ 0.58
SMPD1-207ENST00000532367 CUX2O14529 1486 aa18.64■□□□□ 0.57
SMPD1-207ENST00000532367 TARBP1Q13395 1621 aaKnown RBP18.6■□□□□ 0.57
SMPD1-207ENST00000532367 WDR97A6NE52 1622 aa18.6■□□□□ 0.57
SMPD1-207ENST00000532367 IFT140Q96RY7 1462 aa18.58■□□□□ 0.57
SMPD1-207ENST00000532367 LOC105371045A0A1W2PR82 267 aa18.55■□□□□ 0.56
SMPD1-207ENST00000532367 TDRD9Q8NDG6 1382 aaKnown RBP18.51■□□□□ 0.55
SMPD1-207ENST00000532367 ABCA5Q8WWZ7 1642 aa18.5■□□□□ 0.55
SMPD1-207ENST00000532367 IGF1RP08069 1367 aa18.5■□□□□ 0.55
SMPD1-207ENST00000532367 GAPVD1Q14C86 1478 aa18.5■□□□□ 0.55
SMPD1-207ENST00000532367 KIF21BO75037 1637 aa18.49■□□□□ 0.55
SMPD1-207ENST00000532367 PRXQ9BXM0 1461 aa18.46■□□□□ 0.54
SMPD1-207ENST00000532367 EHMT2Q96KQ7 1210 aa18.45■□□□□ 0.54
SMPD1-207ENST00000532367 GOLGA3Q08378 1498 aa18.45■□□□□ 0.54
SMPD1-207ENST00000532367 AQRO60306 1485 aaKnown RBP eCLIP18.44■□□□□ 0.54
SMPD1-207ENST00000532367 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
SMPD1-207ENST00000532367 ZNF608Q9ULD9 1512 aaPredicted RBP18.44■□□□□ 0.54
SMPD1-207ENST00000532367 CARMIL1Q5VZK9 1371 aa18.42■□□□□ 0.54
SMPD1-207ENST00000532367 CUL7Q14999 1698 aa18.41■□□□□ 0.54
SMPD1-207ENST00000532367 PBRM1Q86U86 1689 aa18.4■□□□□ 0.54
SMPD1-207ENST00000532367 GRIN2BQ13224 1484 aa18.39■□□□□ 0.54
SMPD1-207ENST00000532367 RAPGEF2Q9Y4G8 1499 aa18.39■□□□□ 0.53
SMPD1-207ENST00000532367 EIF4G3O43432 1585 aaKnown RBP18.38■□□□□ 0.53
SMPD1-207ENST00000532367 UBTFP17480 764 aaKnown RBP18.38■□□□□ 0.53
SMPD1-207ENST00000532367 TNIKQ9UKE5 1360 aa18.35■□□□□ 0.53
SMPD1-207ENST00000532367 FHAD1B1AJZ9 1412 aa18.3■□□□□ 0.52
SMPD1-207ENST00000532367 ADAMTS12P58397 1594 aa18.28■□□□□ 0.52
SMPD1-207ENST00000532367 SNAPC4Q5SXM2 1469 aa18.26■□□□□ 0.51
SMPD1-207ENST00000532367 MAGI1Q96QZ7 1491 aaPredicted RBP18.26■□□□□ 0.51
SMPD1-207ENST00000532367 CEP162Q5TB80 1403 aa18.2■□□□□ 0.5
SMPD1-207ENST00000532367 SYNJ2O15056 1496 aa18.19■□□□□ 0.5
SMPD1-207ENST00000532367 CHMP7Q8WUX9 453 aaPredicted RBP18.17■□□□□ 0.5
SMPD1-207ENST00000532367 CTTNBP2Q8WZ74 1663 aa18.15■□□□□ 0.5
SMPD1-207ENST00000532367 GRIN2AQ12879 1464 aa18.14■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms