RNA–Protein interactions for RNA: ENST00000531857.1

PKP3-208, Transcript of plakophilin 3, humanhuman

TSL 4

Gene PKP3, Length 687 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-208ENST00000531857 NISCHQ9Y2I1 1504 aa43.89■■■■■ 4.62
PKP3-208ENST00000531857 ABCC9O60706 1549 aa39.73■■■■□ 3.95
PKP3-208ENST00000531857 CCDC180Q9P1Z9 1646 aa39.52■■■■□ 3.92
PKP3-208ENST00000531857 RB1CC1Q8TDY2 1594 aa37.69■■■■□ 3.62
PKP3-208ENST00000531857 DNAJC5BQ9UF47 199 aa37.49■■■■□ 3.59
PKP3-208ENST00000531857 NACADO15069 1562 aa37.37■■■■□ 3.57
PKP3-208ENST00000531857 DCAF8L2P0C7V8 631 aa37.13■■■■□ 3.53
PKP3-208ENST00000531857 UNC13AQ9UPW8 1703 aa37.01■■■■□ 3.51
PKP3-208ENST00000531857 PABPN1Q86U42 306 aaKnown RBP eCLIP36.94■■■■□ 3.5
PKP3-208ENST00000531857 MYO15BQ96JP2 1530 aa36.75■■■■□ 3.47
PKP3-208ENST00000531857 BICRAQ9NZM4 1560 aa36.67■■■■□ 3.46
PKP3-208ENST00000531857 ZCCHC6Q5VYS8 1495 aaKnown RBP36.32■■■■□ 3.41
PKP3-208ENST00000531857 DCAF1Q9Y4B6 1507 aa36.21■■■■□ 3.39
PKP3-208ENST00000531857 SCRIBQ14160 1630 aa36.02■■■■□ 3.36
PKP3-208ENST00000531857 SHROOM4Q9ULL8 1493 aa36.01■■■■□ 3.36
PKP3-208ENST00000531857 CC2D2AQ9P2K1 1620 aa35.9■■■■□ 3.34
PKP3-208ENST00000531857 CECR2Q9BXF3 1484 aa35.78■■■■□ 3.32
PKP3-208ENST00000531857 EIF4G1Q04637 1599 aaKnown RBP35.75■■■■□ 3.31
PKP3-208ENST00000531857 DNAJC5Q9H3Z4 198 aa34.53■■■■□ 3.12
PKP3-208ENST00000531857 NCAPD3P42695 1498 aa34.49■■■■□ 3.11
PKP3-208ENST00000531857 ATAD2BQ9ULI0 1458 aa34.37■■■■□ 3.09
PKP3-208ENST00000531857 SMARCA4P51532 1647 aa34.32■■■■□ 3.08
PKP3-208ENST00000531857 CUX2O14529 1486 aa34.27■■■■□ 3.08
PKP3-208ENST00000531857 ERCC6Q03468 1493 aa34.27■■■■□ 3.08
PKP3-208ENST00000531857 SMARCA2P51531 1590 aa34.25■■■■□ 3.07
PKP3-208ENST00000531857 HMGXB3Q12766 1538 aa34.22■■■■□ 3.07
PKP3-208ENST00000531857 NESP48681 1621 aa34.09■■■■□ 3.05
PKP3-208ENST00000531857 BAZ1AQ9NRL2 1556 aaPredicted RBP34.07■■■■□ 3.05
PKP3-208ENST00000531857 BAZ1BQ9UIG0 1483 aaKnown RBP34.01■■■■□ 3.04
PKP3-208ENST00000531857 PEG3Q9GZU2 1588 aa33.96■■■■□ 3.03
PKP3-208ENST00000531857 MROH2BQ7Z745 1585 aa33.85■■■■□ 3.01
PKP3-208ENST00000531857 THOC2Q8NI27 1593 aaKnown RBP33.8■■■■□ 3
PKP3-208ENST00000531857 LAMC3Q9Y6N6 1575 aa33.77■■■■□ 3
PKP3-208ENST00000531857 KIF21AQ7Z4S6 1674 aa33.7■■■□□ 2.99
PKP3-208ENST00000531857 PDS5BQ9NTI5 1447 aa33.53■■■□□ 2.96
PKP3-208ENST00000531857 WIZO95785 1651 aa33.48■■■□□ 2.95
PKP3-208ENST00000531857 CADPSQ9ULU8 1353 aa33.42■■■□□ 2.94
PKP3-208ENST00000531857 MRC2Q9UBG0 1479 aa33.29■■■□□ 2.92
PKP3-208ENST00000531857 WDR62O43379 1518 aa33.24■■■□□ 2.91
PKP3-208ENST00000531857 CEP164Q9UPV0 1460 aa33.12■■■□□ 2.89
PKP3-208ENST00000531857 FANCD2Q9BXW9 1451 aa33.06■■■□□ 2.88
PKP3-208ENST00000531857 RSF1Q96T23 1441 aaPredicted RBP33.03■■■□□ 2.88
PKP3-208ENST00000531857 CFTRP13569 1480 aa33.01■■■□□ 2.88
PKP3-208ENST00000531857 TOP2AP11388 1531 aaKnown RBP32.97■■■□□ 2.87
PKP3-208ENST00000531857 TRIM41Q8WV44 630 aa32.93■■■□□ 2.86
PKP3-208ENST00000531857 URB2Q14146 1524 aaKnown RBP32.85■■■□□ 2.85
PKP3-208ENST00000531857 PRDM2Q13029 1718 aa32.79■■■□□ 2.84
PKP3-208ENST00000531857 OSCARQ8IYS5 282 aa32.66■■■□□ 2.82
PKP3-208ENST00000531857 CCDC88BA6NC98 1476 aa32.61■■■□□ 2.81
PKP3-208ENST00000531857 ZNF608Q9ULD9 1512 aaPredicted RBP32.48■■■□□ 2.79
PKP3-208ENST00000531857 IFT140Q96RY7 1462 aa32.44■■■□□ 2.78
PKP3-208ENST00000531857 TOPBP1Q92547 1522 aa32.43■■■□□ 2.78
PKP3-208ENST00000531857 RIMBP3CA6NJZ7 1639 aa32.37■■■□□ 2.77
PKP3-208ENST00000531857 RIMBP3BA6NNM3 1639 aa32.37■■■□□ 2.77
PKP3-208ENST00000531857 RIMBP3Q9UFD9 1639 aa32.37■■■□□ 2.77
PKP3-208ENST00000531857 EIF4G3O43432 1585 aaKnown RBP32.3■■■□□ 2.76
PKP3-208ENST00000531857 ABCC8Q09428 1581 aa32.29■■■□□ 2.76
PKP3-208ENST00000531857 DNMBPQ6XZF7 1577 aa32.29■■■□□ 2.76
PKP3-208ENST00000531857 TARBP1Q13395 1621 aaKnown RBP32.2■■■□□ 2.75
PKP3-208ENST00000531857 ARHGEF11O15085 1522 aa32.2■■■□□ 2.74
PKP3-208ENST00000531857 CHD1O14646 1710 aa32.17■■■□□ 2.74
PKP3-208ENST00000531857 AQRO60306 1485 aaKnown RBP eCLIP32.14■■■□□ 2.742e-6■■■■■ 27.4
PKP3-208ENST00000531857 POLA1P09884 1462 aaPredicted RBP32.08■■■□□ 2.73
PKP3-208ENST00000531857 RAD54L2Q9Y4B4 1467 aa31.99■■■□□ 2.71
PKP3-208ENST00000531857 CYB5RLQ6IPT4 315 aa31.95■■■□□ 2.71
PKP3-208ENST00000531857 FBLN2P98095 1184 aa31.94■■■□□ 2.7
PKP3-208ENST00000531857 SOGA1O94964 1423 aa31.92■■■□□ 2.7
PKP3-208ENST00000531857 TDRD9Q8NDG6 1382 aaKnown RBP31.9■■■□□ 2.7
PKP3-208ENST00000531857 ARAP1Q96P48 1450 aa31.86■■■□□ 2.69
PKP3-208ENST00000531857 FGD5Q6ZNL6 1462 aa31.85■■■□□ 2.69
PKP3-208ENST00000531857 CUX1P39880 1505 aa31.81■■■□□ 2.68
PKP3-208ENST00000531857 SNAPC4Q5SXM2 1469 aa31.79■■■□□ 2.68
PKP3-208ENST00000531857 WDR97A6NE52 1622 aa31.78■■■□□ 2.68
PKP3-208ENST00000531857 CLASP1Q7Z460 1538 aa31.71■■■□□ 2.67
PKP3-208ENST00000531857 MAGI1Q96QZ7 1491 aaPredicted RBP31.67■■■□□ 2.66
PKP3-208ENST00000531857 GRIN2BQ13224 1484 aa31.65■■■□□ 2.66
PKP3-208ENST00000531857 TRHP20396 242 aaPredicted RBP31.65■■■□□ 2.66
PKP3-208ENST00000531857 CHMP7Q8WUX9 453 aaPredicted RBP31.65■■■□□ 2.66
PKP3-208ENST00000531857 SYNJ1O43426 1573 aa31.64■■■□□ 2.66
PKP3-208ENST00000531857 PBRM1Q86U86 1689 aa31.63■■■□□ 2.65
PKP3-208ENST00000531857 SYNJ2O15056 1496 aa31.58■■■□□ 2.65
PKP3-208ENST00000531857 GAPVD1Q14C86 1478 aa31.52■■■□□ 2.64
PKP3-208ENST00000531857 ABCA5Q8WWZ7 1642 aa31.49■■■□□ 2.63
PKP3-208ENST00000531857 ABCA10Q8WWZ4 1543 aa31.46■■■□□ 2.63
PKP3-208ENST00000531857 SUPT5HO00267 1087 aaKnown RBP31.41■■■□□ 2.62
PKP3-208ENST00000531857 BIVM-ERCC5R4GMW8 1640 aa31.27■■■□□ 2.6
PKP3-208ENST00000531857 GRIN2AQ12879 1464 aa31.27■■■□□ 2.6
PKP3-208ENST00000531857 WRNQ14191 1432 aaPredicted RBP eCLIP31.26■■■□□ 2.6
PKP3-208ENST00000531857 ERCC6L2Q5T890 1561 aa31.26■■■□□ 2.59
PKP3-208ENST00000531857 ADAMTS12P58397 1594 aa31.25■■■□□ 2.59
PKP3-208ENST00000531857 TOP2BQ02880 1626 aa31.24■■■□□ 2.59
PKP3-208ENST00000531857 CEP170Q5SW79 1584 aa31.22■■■□□ 2.59
PKP3-208ENST00000531857 NUP160Q12769 1436 aa31.15■■■□□ 2.58
PKP3-208ENST00000531857 SHROOM2Q13796 1616 aa31.11■■■□□ 2.57
PKP3-208ENST00000531857 FHAD1B1AJZ9 1412 aa31.09■■■□□ 2.57
PKP3-208ENST00000531857 ERICH3Q5RHP9 1530 aa31.06■■■□□ 2.56
PKP3-208ENST00000531857 KIF13AQ9H1H9 1805 aa30.88■■■□□ 2.53
PKP3-208ENST00000531857 PRG4Q92954 1404 aaPredicted RBP30.88■■■□□ 2.53
PKP3-208ENST00000531857 AEBP2Q6ZN18 517 aaPredicted RBP30.86■■■□□ 2.53
PKP3-208ENST00000531857 JPH4Q96JJ6 628 aa30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms