RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 NISCHQ9Y2I1 1504 aa23.04■■□□□ 1.28
USF1-210ENST00000531842 ABCC9O60706 1549 aa21.22■□□□□ 0.99
USF1-210ENST00000531842 CCDC180Q9P1Z9 1646 aa20.78■□□□□ 0.92
USF1-210ENST00000531842 DNAJC5BQ9UF47 199 aa20.23■□□□□ 0.83
USF1-210ENST00000531842 RB1CC1Q8TDY2 1594 aa19.93■□□□□ 0.78
USF1-210ENST00000531842 PABPN1Q86U42 306 aaKnown RBP eCLIP19.73■□□□□ 0.75
USF1-210ENST00000531842 UNC13AQ9UPW8 1703 aa19.7■□□□□ 0.74
USF1-210ENST00000531842 DCAF8L2P0C7V8 631 aa19.68■□□□□ 0.74
USF1-210ENST00000531842 NACADO15069 1562 aa19.68■□□□□ 0.74
USF1-210ENST00000531842 BICRAQ9NZM4 1560 aa19.48■□□□□ 0.71
USF1-210ENST00000531842 MYO15BQ96JP2 1530 aa19.2■□□□□ 0.66
USF1-210ENST00000531842 CC2D2AQ9P2K1 1620 aa19.13■□□□□ 0.65
USF1-210ENST00000531842 CECR2Q9BXF3 1484 aa19.07■□□□□ 0.64
USF1-210ENST00000531842 SCRIBQ14160 1630 aa19.07■□□□□ 0.64
USF1-210ENST00000531842 ZCCHC6Q5VYS8 1495 aaKnown RBP19.03■□□□□ 0.64
USF1-210ENST00000531842 EIF4G1Q04637 1599 aaKnown RBP18.97■□□□□ 0.63
USF1-210ENST00000531842 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
USF1-210ENST00000531842 DCAF1Q9Y4B6 1507 aa18.9■□□□□ 0.62
USF1-210ENST00000531842 DNAJC5Q9H3Z4 198 aa18.64■□□□□ 0.57
USF1-210ENST00000531842 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
USF1-210ENST00000531842 CUX2O14529 1486 aa18.25■□□□□ 0.51
USF1-210ENST00000531842 NESP48681 1621 aa18.19■□□□□ 0.5
USF1-210ENST00000531842 NCAPD3P42695 1498 aa18.17■□□□□ 0.5
USF1-210ENST00000531842 ATAD2BQ9ULI0 1458 aa18.14■□□□□ 0.49
USF1-210ENST00000531842 SMARCA4P51532 1647 aa18.09■□□□□ 0.49
USF1-210ENST00000531842 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
USF1-210ENST00000531842 SMARCA2P51531 1590 aa18.01■□□□□ 0.47
USF1-210ENST00000531842 THOC2Q8NI27 1593 aaKnown RBP18■□□□□ 0.47
USF1-210ENST00000531842 KIF21AQ7Z4S6 1674 aa17.95■□□□□ 0.46
USF1-210ENST00000531842 BAZ1BQ9UIG0 1483 aaKnown RBP17.94■□□□□ 0.46
USF1-210ENST00000531842 BAZ1AQ9NRL2 1556 aaPredicted RBP17.87■□□□□ 0.45
USF1-210ENST00000531842 MROH2BQ7Z745 1585 aa17.84■□□□□ 0.45
USF1-210ENST00000531842 LAMC3Q9Y6N6 1575 aa17.83■□□□□ 0.45
USF1-210ENST00000531842 TRIM41Q8WV44 630 aa17.82■□□□□ 0.44
USF1-210ENST00000531842 PEG3Q9GZU2 1588 aa17.82■□□□□ 0.44
USF1-210ENST00000531842 PDS5BQ9NTI5 1447 aa17.7■□□□□ 0.42
USF1-210ENST00000531842 WIZO95785 1651 aa17.67■□□□□ 0.42
USF1-210ENST00000531842 MRC2Q9UBG0 1479 aa17.63■□□□□ 0.41
USF1-210ENST00000531842 CADPSQ9ULU8 1353 aa17.62■□□□□ 0.41
USF1-210ENST00000531842 WDR62O43379 1518 aa17.61■□□□□ 0.41
USF1-210ENST00000531842 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
USF1-210ENST00000531842 FANCD2Q9BXW9 1451 aa17.48■□□□□ 0.39
USF1-210ENST00000531842 URB2Q14146 1524 aaKnown RBP17.41■□□□□ 0.38
USF1-210ENST00000531842 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
USF1-210ENST00000531842 CFTRP13569 1480 aa17.37■□□□□ 0.37
USF1-210ENST00000531842 RIMBP3CA6NJZ7 1639 aa17.33■□□□□ 0.37
USF1-210ENST00000531842 RIMBP3BA6NNM3 1639 aa17.33■□□□□ 0.37
USF1-210ENST00000531842 RIMBP3Q9UFD9 1639 aa17.33■□□□□ 0.37
USF1-210ENST00000531842 RSF1Q96T23 1441 aaPredicted RBP17.3■□□□□ 0.36
USF1-210ENST00000531842 TOP2AP11388 1531 aaKnown RBP17.29■□□□□ 0.36
USF1-210ENST00000531842 ZNF608Q9ULD9 1512 aaPredicted RBP17.28■□□□□ 0.36
USF1-210ENST00000531842 PRDM2Q13029 1718 aa17.27■□□□□ 0.36
USF1-210ENST00000531842 ARHGEF11O15085 1522 aa17.19■□□□□ 0.34
USF1-210ENST00000531842 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
USF1-210ENST00000531842 CHD1O14646 1710 aa17.14■□□□□ 0.33
USF1-210ENST00000531842 EIF4G3O43432 1585 aaKnown RBP17.14■□□□□ 0.33
USF1-210ENST00000531842 TOPBP1Q92547 1522 aa17.13■□□□□ 0.33
USF1-210ENST00000531842 IFT140Q96RY7 1462 aa17.12■□□□□ 0.33
USF1-210ENST00000531842 CYB5RLQ6IPT4 315 aa17.09■□□□□ 0.33
USF1-210ENST00000531842 AQRO60306 1485 aaKnown RBP eCLIP17.06■□□□□ 0.325e-7■■■■■ 28.1
USF1-210ENST00000531842 TARBP1Q13395 1621 aaKnown RBP17.03■□□□□ 0.32
USF1-210ENST00000531842 ARAP1Q96P48 1450 aa17.02■□□□□ 0.32
USF1-210ENST00000531842 DNMBPQ6XZF7 1577 aa17.02■□□□□ 0.31
USF1-210ENST00000531842 FBLN2P98095 1184 aa17■□□□□ 0.31
USF1-210ENST00000531842 TRHP20396 242 aaPredicted RBP16.99■□□□□ 0.31
USF1-210ENST00000531842 RAD54L2Q9Y4B4 1467 aa16.95■□□□□ 0.3
USF1-210ENST00000531842 POLA1P09884 1462 aaPredicted RBP16.93■□□□□ 0.3
USF1-210ENST00000531842 ABCC8Q09428 1581 aa16.91■□□□□ 0.3
USF1-210ENST00000531842 TDRD9Q8NDG6 1382 aaKnown RBP16.89■□□□□ 0.3
USF1-210ENST00000531842 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
USF1-210ENST00000531842 CLASP1Q7Z460 1538 aa16.83■□□□□ 0.28
USF1-210ENST00000531842 SOGA1O94964 1423 aa16.82■□□□□ 0.28
USF1-210ENST00000531842 FGD5Q6ZNL6 1462 aa16.8■□□□□ 0.28
USF1-210ENST00000531842 CUX1P39880 1505 aa16.76■□□□□ 0.27
USF1-210ENST00000531842 WDR97A6NE52 1622 aa16.74■□□□□ 0.27
USF1-210ENST00000531842 SYNJ1O43426 1573 aa16.73■□□□□ 0.27
USF1-210ENST00000531842 PBRM1Q86U86 1689 aa16.73■□□□□ 0.27
USF1-210ENST00000531842 CHMP7Q8WUX9 453 aaPredicted RBP16.73■□□□□ 0.27
USF1-210ENST00000531842 GRIN2BQ13224 1484 aa16.68■□□□□ 0.26
USF1-210ENST00000531842 MAGI1Q96QZ7 1491 aaPredicted RBP16.68■□□□□ 0.26
USF1-210ENST00000531842 ERCC6L2Q5T890 1561 aa16.68■□□□□ 0.26
USF1-210ENST00000531842 AEBP2Q6ZN18 517 aaPredicted RBP16.67■□□□□ 0.26
USF1-210ENST00000531842 SYNJ2O15056 1496 aa16.67■□□□□ 0.26
USF1-210ENST00000531842 GAPVD1Q14C86 1478 aa16.65■□□□□ 0.26
USF1-210ENST00000531842 ABCA5Q8WWZ7 1642 aa16.59■□□□□ 0.25
USF1-210ENST00000531842 CEP170Q5SW79 1584 aa16.54■□□□□ 0.24
USF1-210ENST00000531842 ABCA10Q8WWZ4 1543 aa16.53■□□□□ 0.24
USF1-210ENST00000531842 KIF13AQ9H1H9 1805 aa16.5■□□□□ 0.23
USF1-210ENST00000531842 GRIN2AQ12879 1464 aa16.5■□□□□ 0.23
USF1-210ENST00000531842 ADAMTS12P58397 1594 aa16.49■□□□□ 0.23
USF1-210ENST00000531842 SHROOM2Q13796 1616 aa16.45■□□□□ 0.22
USF1-210ENST00000531842 NUP160Q12769 1436 aa16.43■□□□□ 0.22
USF1-210ENST00000531842 BIVM-ERCC5R4GMW8 1640 aa16.39■□□□□ 0.21
USF1-210ENST00000531842 SUPT5HO00267 1087 aaKnown RBP16.39■□□□□ 0.21
USF1-210ENST00000531842 WRNQ14191 1432 aaPredicted RBP eCLIP16.37■□□□□ 0.21
USF1-210ENST00000531842 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
USF1-210ENST00000531842 FHAD1B1AJZ9 1412 aa16.35■□□□□ 0.21
USF1-210ENST00000531842 PRG4Q92954 1404 aaPredicted RBP16.34■□□□□ 0.21
USF1-210ENST00000531842 TSPOAP1O95153 1857 aa16.29■□□□□ 0.2
USF1-210ENST00000531842 ERICH3Q5RHP9 1530 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms