RNA–Protein interactions for RNA: ENST00000531733.1

FDFT1-220, Transcript of farnesyl-diphosphate farnesyltransferase 1, human

TSL 2

Gene FDFT1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FDFT1-220	ENST00000531733	NISCH	Q9Y2I1	1504 aa		53.1	■■■■■ 6.09
FDFT1-220	ENST00000531733	ABCC9	O60706	1549 aa		47.9	■■■■■ 5.26
FDFT1-220	ENST00000531733	CCDC180	Q9P1Z9	1646 aa		47.64	■■■■■ 5.22
FDFT1-220	ENST00000531733	RB1CC1	Q8TDY2	1594 aa		45.42	■■■■■ 4.86
FDFT1-220	ENST00000531733	DNAJC5B	Q9UF47	199 aa		45.15	■■■■■ 4.82
FDFT1-220	ENST00000531733	NACAD	O15069	1562 aa		45.07	■■■■■ 4.81
FDFT1-220	ENST00000531733	DCAF8L2	P0C7V8	631 aa		44.89	■■■■■ 4.78
FDFT1-220	ENST00000531733	PABPN1	Q86U42	306 aa	Known RBP eCLIP	44.6	■■■■■ 4.73
FDFT1-220	ENST00000531733	UNC13A	Q9UPW8	1703 aa		44.51	■■■■■ 4.72
FDFT1-220	ENST00000531733	MYO15B	Q96JP2	1530 aa		44.38	■■■■■ 4.69
FDFT1-220	ENST00000531733	BICRA	Q9NZM4	1560 aa		44.23	■■■■■ 4.67
FDFT1-220	ENST00000531733	ZCCHC6	Q5VYS8	1495 aa	Known RBP	43.99	■■■■■ 4.63
FDFT1-220	ENST00000531733	DCAF1	Q9Y4B6	1507 aa		43.79	■■■■■ 4.6
FDFT1-220	ENST00000531733	SCRIB	Q14160	1630 aa		43.51	■■■■■ 4.56
FDFT1-220	ENST00000531733	SHROOM4	Q9ULL8	1493 aa		43.43	■■■■■ 4.54
FDFT1-220	ENST00000531733	CC2D2A	Q9P2K1	1620 aa		43.24	■■■■■ 4.51
FDFT1-220	ENST00000531733	CECR2	Q9BXF3	1484 aa		43.12	■■■■■ 4.49
FDFT1-220	ENST00000531733	EIF4G1	Q04637	1599 aa	Known RBP	43.1	■■■■■ 4.49
FDFT1-220	ENST00000531733	NCAPD3	P42695	1498 aa		41.65	■■■■■ 4.26
FDFT1-220	ENST00000531733	ATAD2B	Q9ULI0	1458 aa		41.54	■■■■■ 4.24
FDFT1-220	ENST00000531733	SMARCA4	P51532	1647 aa		41.46	■■■■■ 4.23
FDFT1-220	ENST00000531733	DNAJC5	Q9H3Z4	198 aa		41.43	■■■■■ 4.22
FDFT1-220	ENST00000531733	SMARCA2	P51531	1590 aa		41.34	■■■■■ 4.21
FDFT1-220	ENST00000531733	HMGXB3	Q12766	1538 aa		41.31	■■■■■ 4.2
FDFT1-220	ENST00000531733	ERCC6	Q03468	1493 aa		41.28	■■■■■ 4.2
FDFT1-220	ENST00000531733	CUX2	O14529	1486 aa		41.23	■■■■■ 4.19
FDFT1-220	ENST00000531733	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	41.18	■■■■■ 4.18
FDFT1-220	ENST00000531733	NES	P48681	1621 aa		41.15	■■■■■ 4.18
FDFT1-220	ENST00000531733	BAZ1B	Q9UIG0	1483 aa	Known RBP	41.09	■■■■■ 4.17
FDFT1-220	ENST00000531733	PEG3	Q9GZU2	1588 aa		41.03	■■■■■ 4.16
FDFT1-220	ENST00000531733	MROH2B	Q7Z745	1585 aa		40.98	■■■■■ 4.15
FDFT1-220	ENST00000531733	THOC2	Q8NI27	1593 aa	Known RBP	40.71	■■■■■ 4.11
FDFT1-220	ENST00000531733	LAMC3	Q9Y6N6	1575 aa		40.7	■■■■■ 4.11
FDFT1-220	ENST00000531733	KIF21A	Q7Z4S6	1674 aa		40.57	■■■■■ 4.09
FDFT1-220	ENST00000531733	WIZ	O95785	1651 aa		40.48	■■■■■ 4.07
FDFT1-220	ENST00000531733	PDS5B	Q9NTI5	1447 aa		40.45	■■■■■ 4.07
FDFT1-220	ENST00000531733	CADPS	Q9ULU8	1353 aa		40.38	■■■■■ 4.06
FDFT1-220	ENST00000531733	MRC2	Q9UBG0	1479 aa		40.17	■■■■■ 4.02
FDFT1-220	ENST00000531733	WDR62	O43379	1518 aa		40.09	■■■■■ 4.01
FDFT1-220	ENST00000531733	RSF1	Q96T23	1441 aa	Predicted RBP	40.05	■■■■■ 4
FDFT1-220	ENST00000531733	CEP164	Q9UPV0	1460 aa		39.96	■■■■□ 3.99
FDFT1-220	ENST00000531733	FANCD2	Q9BXW9	1451 aa		39.94	■■■■□ 3.98
FDFT1-220	ENST00000531733	CFTR	P13569	1480 aa		39.9	■■■■□ 3.98
FDFT1-220	ENST00000531733	TOP2A	P11388	1531 aa	Known RBP	39.89	■■■■□ 3.98
FDFT1-220	ENST00000531733	URB2	Q14146	1524 aa	Known RBP	39.68	■■■■□ 3.94
FDFT1-220	ENST00000531733	TRIM41	Q8WV44	630 aa		39.59	■■■■□ 3.93
FDFT1-220	ENST00000531733	CCDC88B	A6NC98	1476 aa		39.48	■■■■□ 3.91
FDFT1-220	ENST00000531733	PRDM2	Q13029	1718 aa		39.45	■■■■□ 3.91
FDFT1-220	ENST00000531733	OSCAR	Q8IYS5	282 aa		39.33	■■■■□ 3.89
FDFT1-220	ENST00000531733	ZNF608	Q9ULD9	1512 aa	Predicted RBP	39.23	■■■■□ 3.87
FDFT1-220	ENST00000531733	TOPBP1	Q92547	1522 aa		39.19	■■■■□ 3.86
FDFT1-220	ENST00000531733	IFT140	Q96RY7	1462 aa		39.17	■■■■□ 3.86
FDFT1-220	ENST00000531733	DNMBP	Q6XZF7	1577 aa		38.99	■■■■□ 3.83
FDFT1-220	ENST00000531733	ABCC8	Q09428	1581 aa		38.96	■■■■□ 3.83
FDFT1-220	ENST00000531733	EIF4G3	O43432	1585 aa	Known RBP	38.95	■■■■□ 3.83
FDFT1-220	ENST00000531733	RIMBP3C	A6NJZ7	1639 aa		38.92	■■■■□ 3.82
FDFT1-220	ENST00000531733	RIMBP3B	A6NNM3	1639 aa		38.92	■■■■□ 3.82
FDFT1-220	ENST00000531733	RIMBP3	Q9UFD9	1639 aa		38.92	■■■■□ 3.82
FDFT1-220	ENST00000531733	TARBP1	Q13395	1621 aa	Known RBP	38.86	■■■■□ 3.81
FDFT1-220	ENST00000531733	AQR	O60306	1485 aa	Known RBP eCLIP	38.83	■■■■□ 3.81	5e-8	■■■■□ 20.9
FDFT1-220	ENST00000531733	POLA1	P09884	1462 aa	Predicted RBP	38.78	■■■■□ 3.8
FDFT1-220	ENST00000531733	ARHGEF11	O15085	1522 aa		38.77	■■■■□ 3.8
FDFT1-220	ENST00000531733	CHD1	O14646	1710 aa		38.7	■■■■□ 3.79
FDFT1-220	ENST00000531733	RAD54L2	Q9Y4B4	1467 aa		38.69	■■■■□ 3.78
FDFT1-220	ENST00000531733	SOGA1	O94964	1423 aa		38.57	■■■■□ 3.77
FDFT1-220	ENST00000531733	TDRD9	Q8NDG6	1382 aa	Known RBP	38.57	■■■■□ 3.76
FDFT1-220	ENST00000531733	FBLN2	P98095	1184 aa		38.55	■■■■□ 3.76
FDFT1-220	ENST00000531733	FGD5	Q6ZNL6	1462 aa		38.52	■■■■□ 3.76
FDFT1-220	ENST00000531733	CUX1	P39880	1505 aa		38.49	■■■■□ 3.75
FDFT1-220	ENST00000531733	CYB5RL	Q6IPT4	315 aa		38.48	■■■■□ 3.75
FDFT1-220	ENST00000531733	SNAPC4	Q5SXM2	1469 aa		38.41	■■■■□ 3.74
FDFT1-220	ENST00000531733	ARAP1	Q96P48	1450 aa		38.41	■■■■□ 3.74
FDFT1-220	ENST00000531733	WDR97	A6NE52	1622 aa		38.33	■■■■□ 3.73
FDFT1-220	ENST00000531733	CLASP1	Q7Z460	1538 aa		38.25	■■■■□ 3.71
FDFT1-220	ENST00000531733	GRIN2B	Q13224	1484 aa		38.23	■■■■□ 3.71
FDFT1-220	ENST00000531733	MAGI1	Q96QZ7	1491 aa	Predicted RBP	38.22	■■■■□ 3.71
FDFT1-220	ENST00000531733	CHMP7	Q8WUX9	453 aa	Predicted RBP	38.21	■■■■□ 3.71
FDFT1-220	ENST00000531733	SUPT5H	O00267	1087 aa	Known RBP	38.18	■■■■□ 3.7
FDFT1-220	ENST00000531733	SYNJ1	O43426	1573 aa		38.14	■■■■□ 3.7
FDFT1-220	ENST00000531733	SYNJ2	O15056	1496 aa		38.13	■■■■□ 3.69
FDFT1-220	ENST00000531733	PBRM1	Q86U86	1689 aa		38.11	■■■■□ 3.69
FDFT1-220	ENST00000531733	GAPVD1	Q14C86	1478 aa		38.1	■■■■□ 3.69
FDFT1-220	ENST00000531733	TRH	P20396	242 aa	Predicted RBP	38.07	■■■■□ 3.68
FDFT1-220	ENST00000531733	ABCA10	Q8WWZ4	1543 aa		38.04	■■■■□ 3.68
FDFT1-220	ENST00000531733	ABCA5	Q8WWZ7	1642 aa		38.02	■■■■□ 3.68
FDFT1-220	ENST00000531733	WRN	Q14191	1432 aa	Predicted RBP eCLIP	37.83	■■■■□ 3.65
FDFT1-220	ENST00000531733	BIVM-ERCC5	R4GMW8	1640 aa		37.79	■■■■□ 3.64
FDFT1-220	ENST00000531733	TOP2B	Q02880	1626 aa		37.79	■■■■□ 3.64
FDFT1-220	ENST00000531733	GRIN2A	Q12879	1464 aa		37.77	■■■■□ 3.64
FDFT1-220	ENST00000531733	ADAMTS12	P58397	1594 aa		37.75	■■■■□ 3.63
FDFT1-220	ENST00000531733	ERCC6L2	Q5T890	1561 aa		37.73	■■■■□ 3.63
FDFT1-220	ENST00000531733	CEP170	Q5SW79	1584 aa		37.69	■■■■□ 3.62
FDFT1-220	ENST00000531733	NUP160	Q12769	1436 aa		37.65	■■■■□ 3.62
FDFT1-220	ENST00000531733	FHAD1	B1AJZ9	1412 aa		37.59	■■■■□ 3.61
FDFT1-220	ENST00000531733	ERICH3	Q5RHP9	1530 aa		37.53	■■■■□ 3.6
FDFT1-220	ENST00000531733	SHROOM2	Q13796	1616 aa		37.5	■■■■□ 3.59
FDFT1-220	ENST00000531733	PRG4	Q92954	1404 aa	Predicted RBP	37.3	■■■■□ 3.56
FDFT1-220	ENST00000531733	JPH4	Q96JJ6	628 aa		37.25	■■■■□ 3.55
FDFT1-220	ENST00000531733	RUSC2	Q8N2Y8	1516 aa		37.22	■■■■□ 3.55
FDFT1-220	ENST00000531733	KIF13A	Q9H1H9	1805 aa		37.1	■■■■□ 3.53

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