RNA–Protein interactions for RNA: ENST00000531589.5

SF3B2-212, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-212ENST00000531589 NISCHQ9Y2I1 1504 aa32.45■■■□□ 2.78
SF3B2-212ENST00000531589 CCDC180Q9P1Z9 1646 aa29.02■■■□□ 2.24
SF3B2-212ENST00000531589 ABCC9O60706 1549 aa28.82■■■□□ 2.2
SF3B2-212ENST00000531589 RB1CC1Q8TDY2 1594 aa27.56■■■□□ 2
SF3B2-212ENST00000531589 NACADO15069 1562 aa27.43■■□□□ 1.98
SF3B2-212ENST00000531589 DCAF8L2P0C7V8 631 aa27.38■■□□□ 1.97
SF3B2-212ENST00000531589 MYO15BQ96JP2 1530 aa27.14■■□□□ 1.94
SF3B2-212ENST00000531589 ZCCHC6Q5VYS8 1495 aaKnown RBP26.92■■□□□ 1.9
SF3B2-212ENST00000531589 PABPN1Q86U42 306 aaKnown RBP eCLIP26.88■■□□□ 1.89
SF3B2-212ENST00000531589 DCAF1Q9Y4B6 1507 aa26.85■■□□□ 1.89
SF3B2-212ENST00000531589 DNAJC5BQ9UF47 199 aa26.82■■□□□ 1.88
SF3B2-212ENST00000531589 UNC13AQ9UPW8 1703 aa26.79■■□□□ 1.88
SF3B2-212ENST00000531589 BICRAQ9NZM4 1560 aa26.67■■□□□ 1.86
SF3B2-212ENST00000531589 SHROOM4Q9ULL8 1493 aa26.45■■□□□ 1.82
SF3B2-212ENST00000531589 SCRIBQ14160 1630 aa26.41■■□□□ 1.82
SF3B2-212ENST00000531589 EIF4G1Q04637 1599 aaKnown RBP26.04■■□□□ 1.76
SF3B2-212ENST00000531589 CC2D2AQ9P2K1 1620 aa26.03■■□□□ 1.76
SF3B2-212ENST00000531589 CECR2Q9BXF3 1484 aa25.97■■□□□ 1.75
SF3B2-212ENST00000531589 NCAPD3P42695 1498 aa25.33■■□□□ 1.65
SF3B2-212ENST00000531589 ATAD2BQ9ULI0 1458 aa25.25■■□□□ 1.63
SF3B2-212ENST00000531589 SMARCA4P51532 1647 aa25.24■■□□□ 1.63
SF3B2-212ENST00000531589 SMARCA2P51531 1590 aa25.22■■□□□ 1.63
SF3B2-212ENST00000531589 BAZ1AQ9NRL2 1556 aaPredicted RBP25.2■■□□□ 1.62
SF3B2-212ENST00000531589 HMGXB3Q12766 1538 aa25.13■■□□□ 1.61
SF3B2-212ENST00000531589 BAZ1BQ9UIG0 1483 aaKnown RBP25.03■■□□□ 1.6
SF3B2-212ENST00000531589 PEG3Q9GZU2 1588 aa25.02■■□□□ 1.6
SF3B2-212ENST00000531589 MROH2BQ7Z745 1585 aa24.97■■□□□ 1.59
SF3B2-212ENST00000531589 ERCC6Q03468 1493 aa24.93■■□□□ 1.58
SF3B2-212ENST00000531589 CUX2O14529 1486 aa24.82■■□□□ 1.56
SF3B2-212ENST00000531589 NESP48681 1621 aa24.78■■□□□ 1.56
SF3B2-212ENST00000531589 LAMC3Q9Y6N6 1575 aa24.71■■□□□ 1.55
SF3B2-212ENST00000531589 WIZO95785 1651 aa24.66■■□□□ 1.54
SF3B2-212ENST00000531589 PDS5BQ9NTI5 1447 aa24.61■■□□□ 1.53
SF3B2-212ENST00000531589 DNAJC5Q9H3Z4 198 aa24.58■■□□□ 1.53
SF3B2-212ENST00000531589 CADPSQ9ULU8 1353 aa24.57■■□□□ 1.52
SF3B2-212ENST00000531589 RSF1Q96T23 1441 aaPredicted RBP24.56■■□□□ 1.52
SF3B2-212ENST00000531589 THOC2Q8NI27 1593 aaKnown RBP24.49■■□□□ 1.51
SF3B2-212ENST00000531589 KIF21AQ7Z4S6 1674 aa24.44■■□□□ 1.5
SF3B2-212ENST00000531589 TOP2AP11388 1531 aaKnown RBP24.4■■□□□ 1.5
SF3B2-212ENST00000531589 MRC2Q9UBG0 1479 aa24.33■■□□□ 1.49
SF3B2-212ENST00000531589 CFTRP13569 1480 aa24.32■■□□□ 1.48
SF3B2-212ENST00000531589 CEP164Q9UPV0 1460 aa24.29■■□□□ 1.48
SF3B2-212ENST00000531589 FANCD2Q9BXW9 1451 aa24.26■■□□□ 1.47
SF3B2-212ENST00000531589 WDR62O43379 1518 aa24.25■■□□□ 1.47
SF3B2-212ENST00000531589 CCDC88BA6NC98 1476 aa24.13■■□□□ 1.45
SF3B2-212ENST00000531589 URB2Q14146 1524 aaKnown RBP24.01■■□□□ 1.43
SF3B2-212ENST00000531589 PRDM2Q13029 1718 aa24.01■■□□□ 1.43
SF3B2-212ENST00000531589 ABCC8Q09428 1581 aa23.86■■□□□ 1.41
SF3B2-212ENST00000531589 TOPBP1Q92547 1522 aa23.81■■□□□ 1.4
SF3B2-212ENST00000531589 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
SF3B2-212ENST00000531589 OSCARQ8IYS5 282 aa23.76■■□□□ 1.39
SF3B2-212ENST00000531589 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
SF3B2-212ENST00000531589 ZNF608Q9ULD9 1512 aaPredicted RBP23.67■■□□□ 1.38
SF3B2-212ENST00000531589 SUPT5HO00267 1087 aaKnown RBP23.65■■□□□ 1.38
SF3B2-212ENST00000531589 POLA1P09884 1462 aaPredicted RBP23.58■■□□□ 1.37
SF3B2-212ENST00000531589 TRIM41Q8WV44 630 aa23.58■■□□□ 1.37
SF3B2-212ENST00000531589 EIF4G3O43432 1585 aaKnown RBP23.56■■□□□ 1.36
SF3B2-212ENST00000531589 TARBP1Q13395 1621 aaKnown RBP23.55■■□□□ 1.36
SF3B2-212ENST00000531589 SOGA1O94964 1423 aa23.52■■□□□ 1.36
SF3B2-212ENST00000531589 AQRO60306 1485 aaKnown RBP eCLIP23.52■■□□□ 1.362e-6■■■■□ 21.7
SF3B2-212ENST00000531589 RAD54L2Q9Y4B4 1467 aa23.48■■□□□ 1.35
SF3B2-212ENST00000531589 FGD5Q6ZNL6 1462 aa23.47■■□□□ 1.35
SF3B2-212ENST00000531589 CUX1P39880 1505 aa23.44■■□□□ 1.34
SF3B2-212ENST00000531589 TDRD9Q8NDG6 1382 aaKnown RBP23.42■■□□□ 1.34
SF3B2-212ENST00000531589 WDR97A6NE52 1622 aa23.41■■□□□ 1.34
SF3B2-212ENST00000531589 FBLN2P98095 1184 aa23.39■■□□□ 1.33
SF3B2-212ENST00000531589 CHD1O14646 1710 aa23.31■■□□□ 1.32
SF3B2-212ENST00000531589 RIMBP3CA6NJZ7 1639 aa23.3■■□□□ 1.32
SF3B2-212ENST00000531589 RIMBP3BA6NNM3 1639 aa23.3■■□□□ 1.32
SF3B2-212ENST00000531589 RIMBP3Q9UFD9 1639 aa23.3■■□□□ 1.32
SF3B2-212ENST00000531589 GRIN2BQ13224 1484 aa23.3■■□□□ 1.32
SF3B2-212ENST00000531589 ARHGEF11O15085 1522 aa23.28■■□□□ 1.32
SF3B2-212ENST00000531589 SNAPC4Q5SXM2 1469 aa23.28■■□□□ 1.32
SF3B2-212ENST00000531589 CHMP7Q8WUX9 453 aaPredicted RBP23.27■■□□□ 1.32
SF3B2-212ENST00000531589 MAGI1Q96QZ7 1491 aaPredicted RBP23.27■■□□□ 1.32
SF3B2-212ENST00000531589 GAPVD1Q14C86 1478 aa23.24■■□□□ 1.31
SF3B2-212ENST00000531589 ABCA10Q8WWZ4 1543 aa23.23■■□□□ 1.31
SF3B2-212ENST00000531589 WRNQ14191 1432 aaPredicted RBP eCLIP23.22■■□□□ 1.31
SF3B2-212ENST00000531589 SYNJ2O15056 1496 aa23.18■■□□□ 1.3
SF3B2-212ENST00000531589 CYB5RLQ6IPT4 315 aa23.16■■□□□ 1.3
SF3B2-212ENST00000531589 SYNJ1O43426 1573 aa23.15■■□□□ 1.3
SF3B2-212ENST00000531589 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
SF3B2-212ENST00000531589 ABCA5Q8WWZ7 1642 aa23.13■■□□□ 1.29
SF3B2-212ENST00000531589 BIVM-ERCC5R4GMW8 1640 aa23.13■■□□□ 1.29
SF3B2-212ENST00000531589 PBRM1Q86U86 1689 aa23.13■■□□□ 1.29
SF3B2-212ENST00000531589 CLASP1Q7Z460 1538 aa23.08■■□□□ 1.29
SF3B2-212ENST00000531589 ARAP1Q96P48 1450 aa23.05■■□□□ 1.28
SF3B2-212ENST00000531589 GRIN2AQ12879 1464 aa22.98■■□□□ 1.27
SF3B2-212ENST00000531589 FHAD1B1AJZ9 1412 aa22.96■■□□□ 1.27
SF3B2-212ENST00000531589 ERICH3Q5RHP9 1530 aa22.95■■□□□ 1.26
SF3B2-212ENST00000531589 ADAMTS12P58397 1594 aa22.94■■□□□ 1.26
SF3B2-212ENST00000531589 NUP160Q12769 1436 aa22.89■■□□□ 1.25
SF3B2-212ENST00000531589 TRHP20396 242 aaPredicted RBP22.87■■□□□ 1.25
SF3B2-212ENST00000531589 CEP170Q5SW79 1584 aa22.83■■□□□ 1.25
SF3B2-212ENST00000531589 KIF27Q86VH2 1401 aa22.78■■□□□ 1.24
SF3B2-212ENST00000531589 SHROOM2Q13796 1616 aa22.72■■□□□ 1.23
SF3B2-212ENST00000531589 IGF1RP08069 1367 aa22.71■■□□□ 1.23
SF3B2-212ENST00000531589 JPH4Q96JJ6 628 aa22.7■■□□□ 1.22
SF3B2-212ENST00000531589 ERCC6L2Q5T890 1561 aa22.7■■□□□ 1.22
SF3B2-212ENST00000531589 PRG4Q92954 1404 aaPredicted RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms