RNA–Protein interactions for RNA: ENST00000531326.1

PTPN11-204, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

TSL 4

Gene PTPN11, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-204ENST00000531326 NISCHQ9Y2I1 1504 aa44.74■■■■■ 4.75
PTPN11-204ENST00000531326 ABCC9O60706 1549 aa40.2■■■■■ 4.03
PTPN11-204ENST00000531326 CCDC180Q9P1Z9 1646 aa40.15■■■■■ 4.02
PTPN11-204ENST00000531326 RB1CC1Q8TDY2 1594 aa38.22■■■■□ 3.71
PTPN11-204ENST00000531326 NACADO15069 1562 aa37.96■■■■□ 3.67
PTPN11-204ENST00000531326 DNAJC5BQ9UF47 199 aa37.79■■■■□ 3.64
PTPN11-204ENST00000531326 DCAF8L2P0C7V8 631 aa37.72■■■■□ 3.63
PTPN11-204ENST00000531326 MYO15BQ96JP2 1530 aa37.43■■■■□ 3.58
PTPN11-204ENST00000531326 UNC13AQ9UPW8 1703 aa37.43■■■■□ 3.58
PTPN11-204ENST00000531326 PABPN1Q86U42 306 aaKnown RBP eCLIP37.42■■■■□ 3.58
PTPN11-204ENST00000531326 BICRAQ9NZM4 1560 aa37.18■■■■□ 3.54
PTPN11-204ENST00000531326 ZCCHC6Q5VYS8 1495 aaKnown RBP37.07■■■■□ 3.53
PTPN11-204ENST00000531326 DCAF1Q9Y4B6 1507 aa36.94■■■■□ 3.5
PTPN11-204ENST00000531326 SCRIBQ14160 1630 aa36.6■■■■□ 3.45
PTPN11-204ENST00000531326 SHROOM4Q9ULL8 1493 aa36.59■■■■□ 3.45
PTPN11-204ENST00000531326 CC2D2AQ9P2K1 1620 aa36.32■■■■□ 3.4
PTPN11-204ENST00000531326 EIF4G1Q04637 1599 aaKnown RBP36.23■■■■□ 3.39
PTPN11-204ENST00000531326 CECR2Q9BXF3 1484 aa36.2■■■■□ 3.39
PTPN11-204ENST00000531326 NCAPD3P42695 1498 aa35.05■■■■□ 3.2
PTPN11-204ENST00000531326 ATAD2BQ9ULI0 1458 aa34.96■■■■□ 3.19
PTPN11-204ENST00000531326 SMARCA4P51532 1647 aa34.92■■■■□ 3.18
PTPN11-204ENST00000531326 SMARCA2P51531 1590 aa34.83■■■■□ 3.17
PTPN11-204ENST00000531326 HMGXB3Q12766 1538 aa34.79■■■■□ 3.16
PTPN11-204ENST00000531326 BAZ1AQ9NRL2 1556 aaPredicted RBP34.71■■■■□ 3.15
PTPN11-204ENST00000531326 DNAJC5Q9H3Z4 198 aa34.67■■■■□ 3.14
PTPN11-204ENST00000531326 ERCC6Q03468 1493 aa34.66■■■■□ 3.14
PTPN11-204ENST00000531326 CUX2O14529 1486 aa34.64■■■■□ 3.14
PTPN11-204ENST00000531326 BAZ1BQ9UIG0 1483 aaKnown RBP34.58■■■■□ 3.13
PTPN11-204ENST00000531326 PEG3Q9GZU2 1588 aa34.57■■■■□ 3.13
PTPN11-204ENST00000531326 NESP48681 1621 aa34.55■■■■□ 3.12
PTPN11-204ENST00000531326 MROH2BQ7Z745 1585 aa34.49■■■■□ 3.11
PTPN11-204ENST00000531326 LAMC3Q9Y6N6 1575 aa34.26■■■■□ 3.07
PTPN11-204ENST00000531326 THOC2Q8NI27 1593 aaKnown RBP34.21■■■■□ 3.07
PTPN11-204ENST00000531326 KIF21AQ7Z4S6 1674 aa34.1■■■■□ 3.05
PTPN11-204ENST00000531326 WIZO95785 1651 aa34.08■■■■□ 3.05
PTPN11-204ENST00000531326 PDS5BQ9NTI5 1447 aa34.04■■■■□ 3.04
PTPN11-204ENST00000531326 CADPSQ9ULU8 1353 aa33.98■■■■□ 3.03
PTPN11-204ENST00000531326 MRC2Q9UBG0 1479 aa33.77■■■■□ 3
PTPN11-204ENST00000531326 RSF1Q96T23 1441 aaPredicted RBP33.75■■■□□ 2.99
PTPN11-204ENST00000531326 WDR62O43379 1518 aa33.71■■■□□ 2.99
PTPN11-204ENST00000531326 CEP164Q9UPV0 1460 aa33.63■■■□□ 2.97
PTPN11-204ENST00000531326 TOP2AP11388 1531 aaKnown RBP33.62■■■□□ 2.97
PTPN11-204ENST00000531326 CFTRP13569 1480 aa33.6■■■□□ 2.97
PTPN11-204ENST00000531326 FANCD2Q9BXW9 1451 aa33.6■■■□□ 2.97
PTPN11-204ENST00000531326 URB2Q14146 1524 aaKnown RBP33.36■■■□□ 2.93
PTPN11-204ENST00000531326 PRDM2Q13029 1718 aa33.27■■■□□ 2.92
PTPN11-204ENST00000531326 CCDC88BA6NC98 1476 aa33.25■■■□□ 2.91
PTPN11-204ENST00000531326 TRIM41Q8WV44 630 aa33.12■■■□□ 2.89
PTPN11-204ENST00000531326 OSCARQ8IYS5 282 aa33.03■■■□□ 2.88
PTPN11-204ENST00000531326 TOPBP1Q92547 1522 aa32.97■■■□□ 2.87
PTPN11-204ENST00000531326 IFT140Q96RY7 1462 aa32.95■■■□□ 2.87
PTPN11-204ENST00000531326 ZNF608Q9ULD9 1512 aaPredicted RBP32.95■■■□□ 2.87
PTPN11-204ENST00000531326 ABCC8Q09428 1581 aa32.84■■■□□ 2.85
PTPN11-204ENST00000531326 DNMBPQ6XZF7 1577 aa32.83■■■□□ 2.85
PTPN11-204ENST00000531326 EIF4G3O43432 1585 aaKnown RBP32.75■■■□□ 2.83
PTPN11-204ENST00000531326 TARBP1Q13395 1621 aaKnown RBP32.7■■■□□ 2.83
PTPN11-204ENST00000531326 RIMBP3CA6NJZ7 1639 aa32.66■■■□□ 2.82
PTPN11-204ENST00000531326 RIMBP3BA6NNM3 1639 aa32.66■■■□□ 2.82
PTPN11-204ENST00000531326 RIMBP3Q9UFD9 1639 aa32.66■■■□□ 2.82
PTPN11-204ENST00000531326 AQRO60306 1485 aaKnown RBP eCLIP32.63■■■□□ 2.81
PTPN11-204ENST00000531326 POLA1P09884 1462 aaPredicted RBP32.63■■■□□ 2.81
PTPN11-204ENST00000531326 ARHGEF11O15085 1522 aa32.54■■■□□ 2.8
PTPN11-204ENST00000531326 CHD1O14646 1710 aa32.53■■■□□ 2.8
PTPN11-204ENST00000531326 RAD54L2Q9Y4B4 1467 aa32.53■■■□□ 2.8
PTPN11-204ENST00000531326 SOGA1O94964 1423 aa32.46■■■□□ 2.79
PTPN11-204ENST00000531326 FGD5Q6ZNL6 1462 aa32.42■■■□□ 2.78
PTPN11-204ENST00000531326 TDRD9Q8NDG6 1382 aaKnown RBP32.42■■■□□ 2.78
PTPN11-204ENST00000531326 CUX1P39880 1505 aa32.41■■■□□ 2.78
PTPN11-204ENST00000531326 FBLN2P98095 1184 aa32.37■■■□□ 2.77
PTPN11-204ENST00000531326 WDR97A6NE52 1622 aa32.32■■■□□ 2.76
PTPN11-204ENST00000531326 SNAPC4Q5SXM2 1469 aa32.29■■■□□ 2.76
PTPN11-204ENST00000531326 CYB5RLQ6IPT4 315 aa32.28■■■□□ 2.76
PTPN11-204ENST00000531326 ARAP1Q96P48 1450 aa32.23■■■□□ 2.75
PTPN11-204ENST00000531326 SUPT5HO00267 1087 aaKnown RBP32.19■■■□□ 2.74
PTPN11-204ENST00000531326 GRIN2BQ13224 1484 aa32.18■■■□□ 2.74
PTPN11-204ENST00000531326 MAGI1Q96QZ7 1491 aaPredicted RBP32.18■■■□□ 2.74
PTPN11-204ENST00000531326 CLASP1Q7Z460 1538 aa32.16■■■□□ 2.74
PTPN11-204ENST00000531326 CHMP7Q8WUX9 453 aaPredicted RBP32.13■■■□□ 2.73
PTPN11-204ENST00000531326 SYNJ1O43426 1573 aa32.09■■■□□ 2.73
PTPN11-204ENST00000531326 SYNJ2O15056 1496 aa32.09■■■□□ 2.73
PTPN11-204ENST00000531326 PBRM1Q86U86 1689 aa32.08■■■□□ 2.73
PTPN11-204ENST00000531326 GAPVD1Q14C86 1478 aa32.07■■■□□ 2.72
PTPN11-204ENST00000531326 ABCA10Q8WWZ4 1543 aa32.05■■■□□ 2.72
PTPN11-204ENST00000531326 ABCA5Q8WWZ7 1642 aa32.02■■■□□ 2.72
PTPN11-204ENST00000531326 TRHP20396 242 aaPredicted RBP31.9■■■□□ 2.7
PTPN11-204ENST00000531326 WRNQ14191 1432 aaPredicted RBP eCLIP31.88■■■□□ 2.69
PTPN11-204ENST00000531326 BIVM-ERCC5R4GMW8 1640 aa31.87■■■□□ 2.69
PTPN11-204ENST00000531326 TOP2BQ02880 1626 aa31.86■■■□□ 2.69
PTPN11-204ENST00000531326 GRIN2AQ12879 1464 aa31.78■■■□□ 2.68
PTPN11-204ENST00000531326 ADAMTS12P58397 1594 aa31.77■■■□□ 2.68
PTPN11-204ENST00000531326 CEP170Q5SW79 1584 aa31.69■■■□□ 2.66
PTPN11-204ENST00000531326 NUP160Q12769 1436 aa31.69■■■□□ 2.66
PTPN11-204ENST00000531326 ERCC6L2Q5T890 1561 aa31.68■■■□□ 2.66
PTPN11-204ENST00000531326 FHAD1B1AJZ9 1412 aa31.66■■■□□ 2.66
PTPN11-204ENST00000531326 ERICH3Q5RHP9 1530 aa31.64■■■□□ 2.66
PTPN11-204ENST00000531326 SHROOM2Q13796 1616 aa31.57■■■□□ 2.64
PTPN11-204ENST00000531326 PRG4Q92954 1404 aaPredicted RBP31.37■■■□□ 2.61
PTPN11-204ENST00000531326 JPH4Q96JJ6 628 aa31.34■■■□□ 2.61
PTPN11-204ENST00000531326 RUSC2Q8N2Y8 1516 aa31.33■■■□□ 2.61
PTPN11-204ENST00000531326 IGF1RP08069 1367 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms