RNA–Protein interactions for RNA: ENST00000531303.5

SMPD1-205, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,451 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-205ENST00000531303 NISCHQ9Y2I1 1504 aa44.55■■■■■ 4.72
SMPD1-205ENST00000531303 CCDC180Q9P1Z9 1646 aa39.17■■■■□ 3.86
SMPD1-205ENST00000531303 ABCC9O60706 1549 aa37.74■■■■□ 3.63
SMPD1-205ENST00000531303 ZCCHC6Q5VYS8 1495 aaKnown RBP37.25■■■■□ 3.55
SMPD1-205ENST00000531303 DCAF8L2P0C7V8 631 aa37.16■■■■□ 3.54
SMPD1-205ENST00000531303 DCAF1Q9Y4B6 1507 aa36.77■■■■□ 3.48
SMPD1-205ENST00000531303 NACADO15069 1562 aa36.65■■■■□ 3.46
SMPD1-205ENST00000531303 MYO15BQ96JP2 1530 aa36.58■■■■□ 3.45
SMPD1-205ENST00000531303 RB1CC1Q8TDY2 1594 aa36.53■■■■□ 3.44
SMPD1-205ENST00000531303 SCRIBQ14160 1630 aa35.99■■■■□ 3.35
SMPD1-205ENST00000531303 SHROOM4Q9ULL8 1493 aa35.95■■■■□ 3.35
SMPD1-205ENST00000531303 UNC13AQ9UPW8 1703 aa35.79■■■■□ 3.32
SMPD1-205ENST00000531303 PABPN1Q86U42 306 aaKnown RBP eCLIP35.48■■■■□ 3.27
SMPD1-205ENST00000531303 BICRAQ9NZM4 1560 aa35.41■■■■□ 3.26
SMPD1-205ENST00000531303 CECR2Q9BXF3 1484 aa34.69■■■■□ 3.14
SMPD1-205ENST00000531303 BAZ1AQ9NRL2 1556 aaPredicted RBP34.45■■■■□ 3.11
SMPD1-205ENST00000531303 EIF4G1Q04637 1599 aaKnown RBP34.41■■■■□ 3.1
SMPD1-205ENST00000531303 MROH2BQ7Z745 1585 aa34.41■■■■□ 3.1
SMPD1-205ENST00000531303 SMARCA4P51532 1647 aa34.41■■■■□ 3.1
SMPD1-205ENST00000531303 RSF1Q96T23 1441 aaPredicted RBP34.28■■■■□ 3.08
SMPD1-205ENST00000531303 SUPT5HO00267 1087 aaKnown RBP34.25■■■■□ 3.07
SMPD1-205ENST00000531303 WIZO95785 1651 aa34.12■■■■□ 3.05
SMPD1-205ENST00000531303 CC2D2AQ9P2K1 1620 aa34.11■■■■□ 3.05
SMPD1-205ENST00000531303 ATAD2BQ9ULI0 1458 aa34.01■■■■□ 3.03
SMPD1-205ENST00000531303 SMARCA2P51531 1590 aa33.97■■■■□ 3.03
SMPD1-205ENST00000531303 PEG3Q9GZU2 1588 aa33.95■■■■□ 3.03
SMPD1-205ENST00000531303 DNAJC5BQ9UF47 199 aa33.91■■■■□ 3.02
SMPD1-205ENST00000531303 NCAPD3P42695 1498 aa33.8■■■■□ 3
SMPD1-205ENST00000531303 BAZ1BQ9UIG0 1483 aaKnown RBP33.8■■■■□ 3
SMPD1-205ENST00000531303 TOP2AP11388 1531 aaKnown RBP33.71■■■□□ 2.99
SMPD1-205ENST00000531303 HMGXB3Q12766 1538 aa33.7■■■□□ 2.99
SMPD1-205ENST00000531303 CCDC88BA6NC98 1476 aa33.36■■■□□ 2.93
SMPD1-205ENST00000531303 CADPSQ9ULU8 1353 aa32.92■■■□□ 2.86
SMPD1-205ENST00000531303 NESP48681 1621 aa32.9■■■□□ 2.86
SMPD1-205ENST00000531303 CFTRP13569 1480 aa32.86■■■□□ 2.85
SMPD1-205ENST00000531303 LAMC3Q9Y6N6 1575 aa32.79■■■□□ 2.84
SMPD1-205ENST00000531303 PRDM2Q13029 1718 aa32.71■■■□□ 2.83
SMPD1-205ENST00000531303 PDS5BQ9NTI5 1447 aa32.58■■■□□ 2.81
SMPD1-205ENST00000531303 FANCD2Q9BXW9 1451 aa32.57■■■□□ 2.8
SMPD1-205ENST00000531303 KIF21AQ7Z4S6 1674 aa32.5■■■□□ 2.79
SMPD1-205ENST00000531303 ABCC8Q09428 1581 aa32.46■■■□□ 2.79
SMPD1-205ENST00000531303 ERCC6Q03468 1493 aa32.44■■■□□ 2.78
SMPD1-205ENST00000531303 CEP164Q9UPV0 1460 aa32.44■■■□□ 2.78
SMPD1-205ENST00000531303 CHIC1Q5VXU3 224 aa32.35■■■□□ 2.77
SMPD1-205ENST00000531303 WRNQ14191 1432 aaPredicted RBP eCLIP32.31■■■□□ 2.76
SMPD1-205ENST00000531303 CUX1P39880 1505 aa32.22■■■□□ 2.75
SMPD1-205ENST00000531303 TRIM41Q8WV44 630 aa32.22■■■□□ 2.75
SMPD1-205ENST00000531303 SYNJ1O43426 1573 aa32.21■■■□□ 2.75
SMPD1-205ENST00000531303 MRC2Q9UBG0 1479 aa32.2■■■□□ 2.75
SMPD1-205ENST00000531303 URB2Q14146 1524 aaKnown RBP32.2■■■□□ 2.74
SMPD1-205ENST00000531303 DNMBPQ6XZF7 1577 aa32.15■■■□□ 2.74
SMPD1-205ENST00000531303 TOPBP1Q92547 1522 aa32.14■■■□□ 2.74
SMPD1-205ENST00000531303 TOP2BQ02880 1626 aa32.11■■■□□ 2.73
SMPD1-205ENST00000531303 THOC2Q8NI27 1593 aaKnown RBP32.11■■■□□ 2.73
SMPD1-205ENST00000531303 BIVM-ERCC5R4GMW8 1640 aa32.1■■■□□ 2.73
SMPD1-205ENST00000531303 WDR62O43379 1518 aa32.04■■■□□ 2.72
SMPD1-205ENST00000531303 FGD5Q6ZNL6 1462 aa31.98■■■□□ 2.71
SMPD1-205ENST00000531303 POLA1P09884 1462 aaPredicted RBP31.92■■■□□ 2.7
SMPD1-205ENST00000531303 RAD54L2Q9Y4B4 1467 aa31.85■■■□□ 2.69
SMPD1-205ENST00000531303 SOGA1O94964 1423 aa31.83■■■□□ 2.69
SMPD1-205ENST00000531303 CUX2O14529 1486 aa31.79■■■□□ 2.68
SMPD1-205ENST00000531303 TARBP1Q13395 1621 aaKnown RBP31.7■■■□□ 2.67
SMPD1-205ENST00000531303 IFT140Q96RY7 1462 aa31.69■■■□□ 2.66
SMPD1-205ENST00000531303 FAM9AQ8IZU1 332 aaPredicted RBP31.66■■■□□ 2.66
SMPD1-205ENST00000531303 ABCA10Q8WWZ4 1543 aa31.65■■■□□ 2.66
SMPD1-205ENST00000531303 RUSC2Q8N2Y8 1516 aa31.63■■■□□ 2.65
SMPD1-205ENST00000531303 WDR97A6NE52 1622 aa31.63■■■□□ 2.65
SMPD1-205ENST00000531303 TDRD9Q8NDG6 1382 aaKnown RBP31.6■■■□□ 2.65
SMPD1-205ENST00000531303 ZNF608Q9ULD9 1512 aaPredicted RBP31.57■■■□□ 2.64
SMPD1-205ENST00000531303 KIF27Q86VH2 1401 aa31.56■■■□□ 2.64
SMPD1-205ENST00000531303 AQRO60306 1485 aaKnown RBP eCLIP31.51■■■□□ 2.63
SMPD1-205ENST00000531303 GAPVD1Q14C86 1478 aa31.46■■■□□ 2.63
SMPD1-205ENST00000531303 ABCA5Q8WWZ7 1642 aa31.46■■■□□ 2.63
SMPD1-205ENST00000531303 EIF4G3O43432 1585 aaKnown RBP31.44■■■□□ 2.62
SMPD1-205ENST00000531303 EEA1Q15075 1411 aa31.43■■■□□ 2.62
SMPD1-205ENST00000531303 CSRNP3Q8WYN3 585 aa31.4■■■□□ 2.62
SMPD1-205ENST00000531303 PBRM1Q86U86 1689 aa31.36■■■□□ 2.61
SMPD1-205ENST00000531303 IGF1RP08069 1367 aa31.35■■■□□ 2.61
SMPD1-205ENST00000531303 GRIN2BQ13224 1484 aa31.32■■■□□ 2.6
SMPD1-205ENST00000531303 EHMT2Q96KQ7 1210 aa31.29■■■□□ 2.6
SMPD1-205ENST00000531303 ERICH3Q5RHP9 1530 aa31.27■■■□□ 2.6
SMPD1-205ENST00000531303 SNAPC4Q5SXM2 1469 aa31.2■■■□□ 2.59
SMPD1-205ENST00000531303 CARMIL1Q5VZK9 1371 aa31.19■■■□□ 2.58
SMPD1-205ENST00000531303 CUL7Q14999 1698 aa31.17■■■□□ 2.58
SMPD1-205ENST00000531303 LOC105371045A0A1W2PR82 267 aa31.14■■■□□ 2.57
SMPD1-205ENST00000531303 PRXQ9BXM0 1461 aa31.13■■■□□ 2.57
SMPD1-205ENST00000531303 ADAMTS12P58397 1594 aa31.12■■■□□ 2.57
SMPD1-205ENST00000531303 MAGI1Q96QZ7 1491 aaPredicted RBP31.11■■■□□ 2.57
SMPD1-205ENST00000531303 FHAD1B1AJZ9 1412 aa31.09■■■□□ 2.57
SMPD1-205ENST00000531303 KIF21BO75037 1637 aa31.09■■■□□ 2.57
SMPD1-205ENST00000531303 FBLN2P98095 1184 aa31.08■■■□□ 2.57
SMPD1-205ENST00000531303 RAPGEF2Q9Y4G8 1499 aa31.07■■■□□ 2.56
SMPD1-205ENST00000531303 CHMP7Q8WUX9 453 aaPredicted RBP31.03■■■□□ 2.56
SMPD1-205ENST00000531303 SYNJ2O15056 1496 aa31.01■■■□□ 2.55
SMPD1-205ENST00000531303 GOLGA3Q08378 1498 aa31.01■■■□□ 2.55
SMPD1-205ENST00000531303 UBTFP17480 764 aaKnown RBP30.99■■■□□ 2.55
SMPD1-205ENST00000531303 CHD1O14646 1710 aa30.94■■■□□ 2.54
SMPD1-205ENST00000531303 GRIN2AQ12879 1464 aa30.93■■■□□ 2.54
SMPD1-205ENST00000531303 RANGAP1P46060 587 aaPredicted RBP30.76■■■□□ 2.52
SMPD1-205ENST00000531303 TNIKQ9UKE5 1360 aa30.76■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms