RNA–Protein interactions for RNA: ENST00000531043.1

HIF3A-214, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-214ENST00000531043 NISCHQ9Y2I1 1504 aa33.72■■■□□ 2.99
HIF3A-214ENST00000531043 ABCC9O60706 1549 aa30.56■■■□□ 2.48
HIF3A-214ENST00000531043 CCDC180Q9P1Z9 1646 aa30.26■■■□□ 2.44
HIF3A-214ENST00000531043 DNAJC5BQ9UF47 199 aa28.91■■■□□ 2.22
HIF3A-214ENST00000531043 RB1CC1Q8TDY2 1594 aa28.9■■■□□ 2.22
HIF3A-214ENST00000531043 NACADO15069 1562 aa28.67■■■□□ 2.18
HIF3A-214ENST00000531043 DCAF8L2P0C7V8 631 aa28.58■■■□□ 2.17
HIF3A-214ENST00000531043 PABPN1Q86U42 306 aaKnown RBP eCLIP28.47■■■□□ 2.15
HIF3A-214ENST00000531043 UNC13AQ9UPW8 1703 aa28.38■■■□□ 2.13
HIF3A-214ENST00000531043 MYO15BQ96JP2 1530 aa28.18■■■□□ 2.1
HIF3A-214ENST00000531043 BICRAQ9NZM4 1560 aa28.17■■■□□ 2.1
HIF3A-214ENST00000531043 ZCCHC6Q5VYS8 1495 aaKnown RBP27.9■■■□□ 2.06
HIF3A-214ENST00000531043 DCAF1Q9Y4B6 1507 aa27.77■■■□□ 2.04
HIF3A-214ENST00000531043 SCRIBQ14160 1630 aa27.67■■■□□ 2.02
HIF3A-214ENST00000531043 SHROOM4Q9ULL8 1493 aa27.59■■■□□ 2.01
HIF3A-214ENST00000531043 CC2D2AQ9P2K1 1620 aa27.57■■■□□ 2
HIF3A-214ENST00000531043 CECR2Q9BXF3 1484 aa27.5■■□□□ 1.99
HIF3A-214ENST00000531043 EIF4G1Q04637 1599 aaKnown RBP27.44■■□□□ 1.98
HIF3A-214ENST00000531043 DNAJC5Q9H3Z4 198 aa26.56■■□□□ 1.84
HIF3A-214ENST00000531043 NCAPD3P42695 1498 aa26.49■■□□□ 1.83
HIF3A-214ENST00000531043 ATAD2BQ9ULI0 1458 aa26.42■■□□□ 1.82
HIF3A-214ENST00000531043 SMARCA4P51532 1647 aa26.35■■□□□ 1.81
HIF3A-214ENST00000531043 ERCC6Q03468 1493 aa26.32■■□□□ 1.8
HIF3A-214ENST00000531043 CUX2O14529 1486 aa26.3■■□□□ 1.8
HIF3A-214ENST00000531043 SMARCA2P51531 1590 aa26.27■■□□□ 1.8
HIF3A-214ENST00000531043 HMGXB3Q12766 1538 aa26.25■■□□□ 1.79
HIF3A-214ENST00000531043 NESP48681 1621 aa26.23■■□□□ 1.79
HIF3A-214ENST00000531043 BAZ1AQ9NRL2 1556 aaPredicted RBP26.14■■□□□ 1.78
HIF3A-214ENST00000531043 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
HIF3A-214ENST00000531043 PEG3Q9GZU2 1588 aa26.05■■□□□ 1.76
HIF3A-214ENST00000531043 MROH2BQ7Z745 1585 aa26.03■■□□□ 1.76
HIF3A-214ENST00000531043 THOC2Q8NI27 1593 aaKnown RBP25.94■■□□□ 1.74
HIF3A-214ENST00000531043 LAMC3Q9Y6N6 1575 aa25.89■■□□□ 1.73
HIF3A-214ENST00000531043 KIF21AQ7Z4S6 1674 aa25.85■■□□□ 1.73
HIF3A-214ENST00000531043 PDS5BQ9NTI5 1447 aa25.74■■□□□ 1.71
HIF3A-214ENST00000531043 WIZO95785 1651 aa25.71■■□□□ 1.71
HIF3A-214ENST00000531043 CADPSQ9ULU8 1353 aa25.69■■□□□ 1.7
HIF3A-214ENST00000531043 MRC2Q9UBG0 1479 aa25.57■■□□□ 1.68
HIF3A-214ENST00000531043 WDR62O43379 1518 aa25.52■■□□□ 1.68
HIF3A-214ENST00000531043 CEP164Q9UPV0 1460 aa25.42■■□□□ 1.66
HIF3A-214ENST00000531043 FANCD2Q9BXW9 1451 aa25.41■■□□□ 1.66
HIF3A-214ENST00000531043 RSF1Q96T23 1441 aaPredicted RBP25.41■■□□□ 1.66
HIF3A-214ENST00000531043 CFTRP13569 1480 aa25.36■■□□□ 1.65
HIF3A-214ENST00000531043 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
HIF3A-214ENST00000531043 TOP2AP11388 1531 aaKnown RBP25.32■■□□□ 1.64
HIF3A-214ENST00000531043 URB2Q14146 1524 aaKnown RBP25.26■■□□□ 1.63
HIF3A-214ENST00000531043 OSCARQ8IYS5 282 aa25.1■■□□□ 1.61
HIF3A-214ENST00000531043 PRDM2Q13029 1718 aa25.08■■□□□ 1.61
HIF3A-214ENST00000531043 CCDC88BA6NC98 1476 aa25.08■■□□□ 1.6
HIF3A-214ENST00000531043 ZNF608Q9ULD9 1512 aaPredicted RBP24.99■■□□□ 1.59
HIF3A-214ENST00000531043 TOPBP1Q92547 1522 aa24.92■■□□□ 1.58
HIF3A-214ENST00000531043 IFT140Q96RY7 1462 aa24.92■■□□□ 1.58
HIF3A-214ENST00000531043 RIMBP3CA6NJZ7 1639 aa24.85■■□□□ 1.57
HIF3A-214ENST00000531043 RIMBP3BA6NNM3 1639 aa24.85■■□□□ 1.57
HIF3A-214ENST00000531043 RIMBP3Q9UFD9 1639 aa24.85■■□□□ 1.57
HIF3A-214ENST00000531043 EIF4G3O43432 1585 aaKnown RBP24.79■■□□□ 1.56
HIF3A-214ENST00000531043 DNMBPQ6XZF7 1577 aa24.78■■□□□ 1.56
HIF3A-214ENST00000531043 ABCC8Q09428 1581 aa24.76■■□□□ 1.55
HIF3A-214ENST00000531043 ARHGEF11O15085 1522 aa24.73■■□□□ 1.55
HIF3A-214ENST00000531043 AQRO60306 1485 aaKnown RBP eCLIP24.73■■□□□ 1.55
HIF3A-214ENST00000531043 TARBP1Q13395 1621 aaKnown RBP24.72■■□□□ 1.55
HIF3A-214ENST00000531043 CHD1O14646 1710 aa24.66■■□□□ 1.54
HIF3A-214ENST00000531043 POLA1P09884 1462 aaPredicted RBP24.66■■□□□ 1.54
HIF3A-214ENST00000531043 RAD54L2Q9Y4B4 1467 aa24.62■■□□□ 1.53
HIF3A-214ENST00000531043 CYB5RLQ6IPT4 315 aa24.59■■□□□ 1.53
HIF3A-214ENST00000531043 FBLN2P98095 1184 aa24.57■■□□□ 1.52
HIF3A-214ENST00000531043 TDRD9Q8NDG6 1382 aaKnown RBP24.54■■□□□ 1.52
HIF3A-214ENST00000531043 SOGA1O94964 1423 aa24.52■■□□□ 1.52
HIF3A-214ENST00000531043 ARAP1Q96P48 1450 aa24.51■■□□□ 1.51
HIF3A-214ENST00000531043 FGD5Q6ZNL6 1462 aa24.48■■□□□ 1.51
HIF3A-214ENST00000531043 CUX1P39880 1505 aa24.46■■□□□ 1.51
HIF3A-214ENST00000531043 SNAPC4Q5SXM2 1469 aa24.45■■□□□ 1.5
HIF3A-214ENST00000531043 CLASP1Q7Z460 1538 aa24.35■■□□□ 1.49
HIF3A-214ENST00000531043 WDR97A6NE52 1622 aa24.34■■□□□ 1.49
HIF3A-214ENST00000531043 TRHP20396 242 aaPredicted RBP24.33■■□□□ 1.49
HIF3A-214ENST00000531043 CHMP7Q8WUX9 453 aaPredicted RBP24.33■■□□□ 1.49
HIF3A-214ENST00000531043 MAGI1Q96QZ7 1491 aaPredicted RBP24.32■■□□□ 1.48
HIF3A-214ENST00000531043 GRIN2BQ13224 1484 aa24.31■■□□□ 1.48
HIF3A-214ENST00000531043 SYNJ1O43426 1573 aa24.27■■□□□ 1.48
HIF3A-214ENST00000531043 SYNJ2O15056 1496 aa24.25■■□□□ 1.47
HIF3A-214ENST00000531043 PBRM1Q86U86 1689 aa24.24■■□□□ 1.47
HIF3A-214ENST00000531043 GAPVD1Q14C86 1478 aa24.22■■□□□ 1.47
HIF3A-214ENST00000531043 SUPT5HO00267 1087 aaKnown RBP24.19■■□□□ 1.46
HIF3A-214ENST00000531043 ABCA10Q8WWZ4 1543 aa24.17■■□□□ 1.46
HIF3A-214ENST00000531043 ABCA5Q8WWZ7 1642 aa24.17■■□□□ 1.46
HIF3A-214ENST00000531043 ERCC6L2Q5T890 1561 aa24.05■■□□□ 1.44
HIF3A-214ENST00000531043 WRNQ14191 1432 aaPredicted RBP eCLIP24.01■■□□□ 1.43
HIF3A-214ENST00000531043 GRIN2AQ12879 1464 aa24.01■■□□□ 1.43
HIF3A-214ENST00000531043 ADAMTS12P58397 1594 aa23.99■■□□□ 1.43
HIF3A-214ENST00000531043 CEP170Q5SW79 1584 aa23.98■■□□□ 1.43
HIF3A-214ENST00000531043 BIVM-ERCC5R4GMW8 1640 aa23.97■■□□□ 1.43
HIF3A-214ENST00000531043 TOP2BQ02880 1626 aa23.96■■□□□ 1.43
HIF3A-214ENST00000531043 NUP160Q12769 1436 aa23.95■■□□□ 1.42
HIF3A-214ENST00000531043 FHAD1B1AJZ9 1412 aa23.89■■□□□ 1.41
HIF3A-214ENST00000531043 SHROOM2Q13796 1616 aa23.86■■□□□ 1.41
HIF3A-214ENST00000531043 ERICH3Q5RHP9 1530 aa23.83■■□□□ 1.41
HIF3A-214ENST00000531043 PRG4Q92954 1404 aaPredicted RBP23.74■■□□□ 1.39
HIF3A-214ENST00000531043 JPH4Q96JJ6 628 aa23.72■■□□□ 1.39
HIF3A-214ENST00000531043 AEBP2Q6ZN18 517 aaPredicted RBP23.71■■□□□ 1.39
HIF3A-214ENST00000531043 KIF13AQ9H1H9 1805 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms