RNA–Protein interactions for RNA: ENST00000530887.5

PSMC3-208, Transcript of proteasome 26S subunit, ATPase 3, humanhuman

TSL 2

Gene PSMC3, Length 891 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMC3-208ENST00000530887 NISCHQ9Y2I1 1504 aa45.59■■■■■ 4.89
PSMC3-208ENST00000530887 CCDC180Q9P1Z9 1646 aa41.03■■■■■ 4.16
PSMC3-208ENST00000530887 ABCC9O60706 1549 aa40.86■■■■■ 4.13
PSMC3-208ENST00000530887 RB1CC1Q8TDY2 1594 aa39.08■■■■□ 3.85
PSMC3-208ENST00000530887 NACADO15069 1562 aa38.82■■■■□ 3.81
PSMC3-208ENST00000530887 DCAF8L2P0C7V8 631 aa38.38■■■■□ 3.73
PSMC3-208ENST00000530887 MYO15BQ96JP2 1530 aa38.38■■■■□ 3.73
PSMC3-208ENST00000530887 DNAJC5BQ9UF47 199 aa38.25■■■■□ 3.71
PSMC3-208ENST00000530887 PABPN1Q86U42 306 aaKnown RBP eCLIP37.98■■■■□ 3.67
PSMC3-208ENST00000530887 UNC13AQ9UPW8 1703 aa37.98■■■■□ 3.67
PSMC3-208ENST00000530887 DCAF1Q9Y4B6 1507 aa37.81■■■■□ 3.64
PSMC3-208ENST00000530887 ZCCHC6Q5VYS8 1495 aaKnown RBP37.77■■■■□ 3.64
PSMC3-208ENST00000530887 BICRAQ9NZM4 1560 aa37.76■■■■□ 3.63
PSMC3-208ENST00000530887 SHROOM4Q9ULL8 1493 aa37.61■■■■□ 3.61
PSMC3-208ENST00000530887 SCRIBQ14160 1630 aa37.18■■■■□ 3.54
PSMC3-208ENST00000530887 CC2D2AQ9P2K1 1620 aa36.96■■■■□ 3.51
PSMC3-208ENST00000530887 CECR2Q9BXF3 1484 aa36.92■■■■□ 3.5
PSMC3-208ENST00000530887 EIF4G1Q04637 1599 aaKnown RBP36.91■■■■□ 3.5
PSMC3-208ENST00000530887 NCAPD3P42695 1498 aa35.8■■■■□ 3.32
PSMC3-208ENST00000530887 SMARCA2P51531 1590 aa35.63■■■■□ 3.29
PSMC3-208ENST00000530887 ATAD2BQ9ULI0 1458 aa35.61■■■■□ 3.29
PSMC3-208ENST00000530887 HMGXB3Q12766 1538 aa35.56■■■■□ 3.28
PSMC3-208ENST00000530887 SMARCA4P51532 1647 aa35.55■■■■□ 3.28
PSMC3-208ENST00000530887 CUX2O14529 1486 aa35.47■■■■□ 3.27
PSMC3-208ENST00000530887 BAZ1AQ9NRL2 1556 aaPredicted RBP35.47■■■■□ 3.27
PSMC3-208ENST00000530887 ERCC6Q03468 1493 aa35.42■■■■□ 3.26
PSMC3-208ENST00000530887 DNAJC5Q9H3Z4 198 aa35.4■■■■□ 3.26
PSMC3-208ENST00000530887 PEG3Q9GZU2 1588 aa35.3■■■■□ 3.24
PSMC3-208ENST00000530887 BAZ1BQ9UIG0 1483 aaKnown RBP35.3■■■■□ 3.24
PSMC3-208ENST00000530887 LAMC3Q9Y6N6 1575 aa35.03■■■■□ 3.2
PSMC3-208ENST00000530887 NESP48681 1621 aa35.03■■■■□ 3.2
PSMC3-208ENST00000530887 MROH2BQ7Z745 1585 aa35.01■■■■□ 3.2
PSMC3-208ENST00000530887 PDS5BQ9NTI5 1447 aa34.87■■■■□ 3.17
PSMC3-208ENST00000530887 THOC2Q8NI27 1593 aaKnown RBP34.79■■■■□ 3.16
PSMC3-208ENST00000530887 CADPSQ9ULU8 1353 aa34.7■■■■□ 3.15
PSMC3-208ENST00000530887 KIF21AQ7Z4S6 1674 aa34.63■■■■□ 3.13
PSMC3-208ENST00000530887 WIZO95785 1651 aa34.57■■■■□ 3.12
PSMC3-208ENST00000530887 MRC2Q9UBG0 1479 aa34.48■■■■□ 3.11
PSMC3-208ENST00000530887 WDR62O43379 1518 aa34.39■■■■□ 3.1
PSMC3-208ENST00000530887 CEP164Q9UPV0 1460 aa34.34■■■■□ 3.09
PSMC3-208ENST00000530887 RSF1Q96T23 1441 aaPredicted RBP34.33■■■■□ 3.09
PSMC3-208ENST00000530887 CFTRP13569 1480 aa34.28■■■■□ 3.08
PSMC3-208ENST00000530887 TOP2AP11388 1531 aaKnown RBP34.28■■■■□ 3.08
PSMC3-208ENST00000530887 FANCD2Q9BXW9 1451 aa34.26■■■■□ 3.07
PSMC3-208ENST00000530887 PRDM2Q13029 1718 aa33.93■■■■□ 3.02
PSMC3-208ENST00000530887 URB2Q14146 1524 aaKnown RBP33.89■■■■□ 3.02
PSMC3-208ENST00000530887 CCDC88BA6NC98 1476 aa33.82■■■■□ 3
PSMC3-208ENST00000530887 OSCARQ8IYS5 282 aa33.8■■■■□ 3
PSMC3-208ENST00000530887 ABCC8Q09428 1581 aa33.72■■■□□ 2.99
PSMC3-208ENST00000530887 TRIM41Q8WV44 630 aa33.7■■■□□ 2.99
PSMC3-208ENST00000530887 IFT140Q96RY7 1462 aa33.69■■■□□ 2.98
PSMC3-208ENST00000530887 TOPBP1Q92547 1522 aa33.58■■■□□ 2.97
PSMC3-208ENST00000530887 DNMBPQ6XZF7 1577 aa33.51■■■□□ 2.95
PSMC3-208ENST00000530887 ZNF608Q9ULD9 1512 aaPredicted RBP33.44■■■□□ 2.94
PSMC3-208ENST00000530887 EIF4G3O43432 1585 aaKnown RBP33.34■■■□□ 2.93
PSMC3-208ENST00000530887 TARBP1Q13395 1621 aaKnown RBP33.26■■■□□ 2.91
PSMC3-208ENST00000530887 POLA1P09884 1462 aaPredicted RBP33.24■■■□□ 2.91
PSMC3-208ENST00000530887 RIMBP3CA6NJZ7 1639 aa33.23■■■□□ 2.91
PSMC3-208ENST00000530887 RIMBP3BA6NNM3 1639 aa33.23■■■□□ 2.91
PSMC3-208ENST00000530887 RIMBP3Q9UFD9 1639 aa33.23■■■□□ 2.91
PSMC3-208ENST00000530887 WDR97A6NE52 1622 aa33.17■■■□□ 2.9
PSMC3-208ENST00000530887 AQRO60306 1485 aaKnown RBP eCLIP33.17■■■□□ 2.91e-6■■■■□ 20.8
PSMC3-208ENST00000530887 ARHGEF11O15085 1522 aa33.16■■■□□ 2.9
PSMC3-208ENST00000530887 SOGA1O94964 1423 aa33.11■■■□□ 2.89
PSMC3-208ENST00000530887 CHD1O14646 1710 aa33.05■■■□□ 2.88
PSMC3-208ENST00000530887 RAD54L2Q9Y4B4 1467 aa33.01■■■□□ 2.88
PSMC3-208ENST00000530887 FGD5Q6ZNL6 1462 aa33■■■□□ 2.87
PSMC3-208ENST00000530887 FBLN2P98095 1184 aa33■■■□□ 2.87
PSMC3-208ENST00000530887 TDRD9Q8NDG6 1382 aaKnown RBP32.96■■■□□ 2.87
PSMC3-208ENST00000530887 MAGI1Q96QZ7 1491 aaPredicted RBP32.93■■■□□ 2.86
PSMC3-208ENST00000530887 CUX1P39880 1505 aa32.92■■■□□ 2.86
PSMC3-208ENST00000530887 CYB5RLQ6IPT4 315 aa32.89■■■□□ 2.86
PSMC3-208ENST00000530887 GRIN2BQ13224 1484 aa32.88■■■□□ 2.85
PSMC3-208ENST00000530887 SNAPC4Q5SXM2 1469 aa32.88■■■□□ 2.85
PSMC3-208ENST00000530887 CHMP7Q8WUX9 453 aaPredicted RBP32.85■■■□□ 2.85
PSMC3-208ENST00000530887 SYNJ1O43426 1573 aa32.83■■■□□ 2.85
PSMC3-208ENST00000530887 ARAP1Q96P48 1450 aa32.79■■■□□ 2.84
PSMC3-208ENST00000530887 SYNJ2O15056 1496 aa32.78■■■□□ 2.84
PSMC3-208ENST00000530887 CLASP1Q7Z460 1538 aa32.75■■■□□ 2.83
PSMC3-208ENST00000530887 GAPVD1Q14C86 1478 aa32.73■■■□□ 2.83
PSMC3-208ENST00000530887 ABCA10Q8WWZ4 1543 aa32.71■■■□□ 2.83
PSMC3-208ENST00000530887 SUPT5HO00267 1087 aaKnown RBP32.68■■■□□ 2.82
PSMC3-208ENST00000530887 PBRM1Q86U86 1689 aa32.65■■■□□ 2.82
PSMC3-208ENST00000530887 WRNQ14191 1432 aaPredicted RBP eCLIP32.6■■■□□ 2.81
PSMC3-208ENST00000530887 ABCA5Q8WWZ7 1642 aa32.6■■■□□ 2.81
PSMC3-208ENST00000530887 TRHP20396 242 aaPredicted RBP32.58■■■□□ 2.81
PSMC3-208ENST00000530887 TOP2BQ02880 1626 aa32.48■■■□□ 2.79
PSMC3-208ENST00000530887 BIVM-ERCC5R4GMW8 1640 aa32.47■■■□□ 2.79
PSMC3-208ENST00000530887 GRIN2AQ12879 1464 aa32.42■■■□□ 2.78
PSMC3-208ENST00000530887 ADAMTS12P58397 1594 aa32.36■■■□□ 2.77
PSMC3-208ENST00000530887 FHAD1B1AJZ9 1412 aa32.35■■■□□ 2.77
PSMC3-208ENST00000530887 ERICH3Q5RHP9 1530 aa32.34■■■□□ 2.77
PSMC3-208ENST00000530887 NUP160Q12769 1436 aa32.33■■■□□ 2.77
PSMC3-208ENST00000530887 CEP170Q5SW79 1584 aa32.21■■■□□ 2.75
PSMC3-208ENST00000530887 SHROOM2Q13796 1616 aa32.16■■■□□ 2.74
PSMC3-208ENST00000530887 ERCC6L2Q5T890 1561 aa32.06■■■□□ 2.72
PSMC3-208ENST00000530887 JPH4Q96JJ6 628 aa31.99■■■□□ 2.71
PSMC3-208ENST00000530887 PRG4Q92954 1404 aaPredicted RBP31.98■■■□□ 2.71
PSMC3-208ENST00000530887 KIF27Q86VH2 1401 aa31.92■■■□□ 2.7
PSMC3-208ENST00000530887 RUSC2Q8N2Y8 1516 aa31.9■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms