RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 NISCHQ9Y2I1 1504 aa32.87■■■□□ 2.85
VPS28-211ENST00000530790 CCDC180Q9P1Z9 1646 aa29.39■■■□□ 2.3
VPS28-211ENST00000530790 ABCC9O60706 1549 aa29.01■■■□□ 2.23
VPS28-211ENST00000530790 RB1CC1Q8TDY2 1594 aa27.81■■■□□ 2.04
VPS28-211ENST00000530790 NACADO15069 1562 aa27.69■■■□□ 2.02
VPS28-211ENST00000530790 DCAF8L2P0C7V8 631 aa27.53■■■□□ 2
VPS28-211ENST00000530790 MYO15BQ96JP2 1530 aa27.42■■□□□ 1.98
VPS28-211ENST00000530790 ZCCHC6Q5VYS8 1495 aaKnown RBP27.34■■□□□ 1.97
VPS28-211ENST00000530790 DCAF1Q9Y4B6 1507 aa27.19■■□□□ 1.94
VPS28-211ENST00000530790 UNC13AQ9UPW8 1703 aa27.12■■□□□ 1.93
VPS28-211ENST00000530790 PABPN1Q86U42 306 aaKnown RBP eCLIP27.01■■□□□ 1.91
VPS28-211ENST00000530790 BICRAQ9NZM4 1560 aa26.93■■□□□ 1.9
VPS28-211ENST00000530790 DNAJC5BQ9UF47 199 aa26.8■■□□□ 1.88
VPS28-211ENST00000530790 SCRIBQ14160 1630 aa26.79■■□□□ 1.88
VPS28-211ENST00000530790 SHROOM4Q9ULL8 1493 aa26.7■■□□□ 1.87
VPS28-211ENST00000530790 EIF4G1Q04637 1599 aaKnown RBP26.28■■□□□ 1.8
VPS28-211ENST00000530790 CC2D2AQ9P2K1 1620 aa26.24■■□□□ 1.79
VPS28-211ENST00000530790 CECR2Q9BXF3 1484 aa26.11■■□□□ 1.77
VPS28-211ENST00000530790 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
VPS28-211ENST00000530790 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
VPS28-211ENST00000530790 NCAPD3P42695 1498 aa25.52■■□□□ 1.68
VPS28-211ENST00000530790 ATAD2BQ9ULI0 1458 aa25.5■■□□□ 1.67
VPS28-211ENST00000530790 SMARCA2P51531 1590 aa25.49■■□□□ 1.67
VPS28-211ENST00000530790 HMGXB3Q12766 1538 aa25.42■■□□□ 1.66
VPS28-211ENST00000530790 PEG3Q9GZU2 1588 aa25.33■■□□□ 1.65
VPS28-211ENST00000530790 MROH2BQ7Z745 1585 aa25.31■■□□□ 1.64
VPS28-211ENST00000530790 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
VPS28-211ENST00000530790 ERCC6Q03468 1493 aa25.08■■□□□ 1.6
VPS28-211ENST00000530790 WIZO95785 1651 aa25.03■■□□□ 1.6
VPS28-211ENST00000530790 NESP48681 1621 aa25.01■■□□□ 1.59
VPS28-211ENST00000530790 LAMC3Q9Y6N6 1575 aa24.93■■□□□ 1.58
VPS28-211ENST00000530790 RSF1Q96T23 1441 aaPredicted RBP24.91■■□□□ 1.58
VPS28-211ENST00000530790 CUX2O14529 1486 aa24.9■■□□□ 1.58
VPS28-211ENST00000530790 TOP2AP11388 1531 aaKnown RBP24.78■■□□□ 1.56
VPS28-211ENST00000530790 CADPSQ9ULU8 1353 aa24.77■■□□□ 1.56
VPS28-211ENST00000530790 PDS5BQ9NTI5 1447 aa24.77■■□□□ 1.56
VPS28-211ENST00000530790 THOC2Q8NI27 1593 aaKnown RBP24.74■■□□□ 1.55
VPS28-211ENST00000530790 KIF21AQ7Z4S6 1674 aa24.72■■□□□ 1.55
VPS28-211ENST00000530790 CFTRP13569 1480 aa24.57■■□□□ 1.52
VPS28-211ENST00000530790 MRC2Q9UBG0 1479 aa24.55■■□□□ 1.52
VPS28-211ENST00000530790 CEP164Q9UPV0 1460 aa24.53■■□□□ 1.52
VPS28-211ENST00000530790 FANCD2Q9BXW9 1451 aa24.51■■□□□ 1.51
VPS28-211ENST00000530790 WDR62O43379 1518 aa24.48■■□□□ 1.51
VPS28-211ENST00000530790 CCDC88BA6NC98 1476 aa24.45■■□□□ 1.5
VPS28-211ENST00000530790 DNAJC5Q9H3Z4 198 aa24.4■■□□□ 1.5
VPS28-211ENST00000530790 PRDM2Q13029 1718 aa24.38■■□□□ 1.49
VPS28-211ENST00000530790 URB2Q14146 1524 aaKnown RBP24.27■■□□□ 1.48
VPS28-211ENST00000530790 TOPBP1Q92547 1522 aa24.08■■□□□ 1.45
VPS28-211ENST00000530790 ABCC8Q09428 1581 aa24.06■■□□□ 1.44
VPS28-211ENST00000530790 DNMBPQ6XZF7 1577 aa24.04■■□□□ 1.44
VPS28-211ENST00000530790 SUPT5HO00267 1087 aaKnown RBP24.03■■□□□ 1.44
VPS28-211ENST00000530790 IFT140Q96RY7 1462 aa24.01■■□□□ 1.43
VPS28-211ENST00000530790 ZNF608Q9ULD9 1512 aaPredicted RBP23.9■■□□□ 1.42
VPS28-211ENST00000530790 POLA1P09884 1462 aaPredicted RBP23.86■■□□□ 1.41
VPS28-211ENST00000530790 EIF4G3O43432 1585 aaKnown RBP23.85■■□□□ 1.41
VPS28-211ENST00000530790 TARBP1Q13395 1621 aaKnown RBP23.83■■□□□ 1.41
VPS28-211ENST00000530790 CUX1P39880 1505 aa23.79■■□□□ 1.4
VPS28-211ENST00000530790 FGD5Q6ZNL6 1462 aa23.75■■□□□ 1.39
VPS28-211ENST00000530790 OSCARQ8IYS5 282 aa23.75■■□□□ 1.39
VPS28-211ENST00000530790 RAD54L2Q9Y4B4 1467 aa23.73■■□□□ 1.39
VPS28-211ENST00000530790 SOGA1O94964 1423 aa23.72■■□□□ 1.39
VPS28-211ENST00000530790 AQRO60306 1485 aaKnown RBP eCLIP23.72■■□□□ 1.392e-24■■■■■ 33.3
VPS28-211ENST00000530790 WDR97A6NE52 1622 aa23.67■■□□□ 1.38
VPS28-211ENST00000530790 TDRD9Q8NDG6 1382 aaKnown RBP23.63■■□□□ 1.37
VPS28-211ENST00000530790 CHD1O14646 1710 aa23.57■■□□□ 1.36
VPS28-211ENST00000530790 SNAPC4Q5SXM2 1469 aa23.54■■□□□ 1.36
VPS28-211ENST00000530790 WRNQ14191 1432 aaPredicted RBP eCLIP23.52■■□□□ 1.36
VPS28-211ENST00000530790 GRIN2BQ13224 1484 aa23.51■■□□□ 1.35
VPS28-211ENST00000530790 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
VPS28-211ENST00000530790 TRIM41Q8WV44 630 aa23.51■■□□□ 1.35
VPS28-211ENST00000530790 TOP2BQ02880 1626 aa23.51■■□□□ 1.35
VPS28-211ENST00000530790 BIVM-ERCC5R4GMW8 1640 aa23.51■■□□□ 1.35
VPS28-211ENST00000530790 FBLN2P98095 1184 aa23.5■■□□□ 1.35
VPS28-211ENST00000530790 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
VPS28-211ENST00000530790 SYNJ1O43426 1573 aa23.48■■□□□ 1.35
VPS28-211ENST00000530790 GAPVD1Q14C86 1478 aa23.47■■□□□ 1.35
VPS28-211ENST00000530790 PBRM1Q86U86 1689 aa23.46■■□□□ 1.35
VPS28-211ENST00000530790 ABCA5Q8WWZ7 1642 aa23.46■■□□□ 1.35
VPS28-211ENST00000530790 RIMBP3CA6NJZ7 1639 aa23.45■■□□□ 1.34
VPS28-211ENST00000530790 RIMBP3BA6NNM3 1639 aa23.45■■□□□ 1.34
VPS28-211ENST00000530790 RIMBP3Q9UFD9 1639 aa23.45■■□□□ 1.34
VPS28-211ENST00000530790 ARHGEF11O15085 1522 aa23.43■■□□□ 1.34
VPS28-211ENST00000530790 SYNJ2O15056 1496 aa23.4■■□□□ 1.34
VPS28-211ENST00000530790 CHMP7Q8WUX9 453 aaPredicted RBP23.38■■□□□ 1.33
VPS28-211ENST00000530790 CLASP1Q7Z460 1538 aa23.32■■□□□ 1.32
VPS28-211ENST00000530790 ADAMTS12P58397 1594 aa23.27■■□□□ 1.32
VPS28-211ENST00000530790 ERICH3Q5RHP9 1530 aa23.23■■□□□ 1.31
VPS28-211ENST00000530790 GRIN2AQ12879 1464 aa23.22■■□□□ 1.31
VPS28-211ENST00000530790 ARAP1Q96P48 1450 aa23.21■■□□□ 1.31
VPS28-211ENST00000530790 FHAD1B1AJZ9 1412 aa23.19■■□□□ 1.3
VPS28-211ENST00000530790 CYB5RLQ6IPT4 315 aa23.16■■□□□ 1.3
VPS28-211ENST00000530790 CEP170Q5SW79 1584 aa23.11■■□□□ 1.29
VPS28-211ENST00000530790 NUP160Q12769 1436 aa23.11■■□□□ 1.29
VPS28-211ENST00000530790 KIF27Q86VH2 1401 aa23.06■■□□□ 1.28
VPS28-211ENST00000530790 SHROOM2Q13796 1616 aa22.98■■□□□ 1.27
VPS28-211ENST00000530790 CUL7Q14999 1698 aa22.98■■□□□ 1.27
VPS28-211ENST00000530790 ERCC6L2Q5T890 1561 aa22.94■■□□□ 1.26
VPS28-211ENST00000530790 RUSC2Q8N2Y8 1516 aa22.94■■□□□ 1.26
VPS28-211ENST00000530790 IGF1RP08069 1367 aa22.94■■□□□ 1.26
VPS28-211ENST00000530790 PRG4Q92954 1404 aaPredicted RBP22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms