RNA–Protein interactions for RNA: ENST00000530746.1

PPFIA1-216, Transcript of PTPRF interacting protein alpha 1, humanhuman

TSL 3

Gene PPFIA1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-216ENST00000530746 NISCHQ9Y2I1 1504 aa36.52■■■■□ 3.44
PPFIA1-216ENST00000530746 CCDC180Q9P1Z9 1646 aa32.56■■■□□ 2.8
PPFIA1-216ENST00000530746 ABCC9O60706 1549 aa31.9■■■□□ 2.7
PPFIA1-216ENST00000530746 RB1CC1Q8TDY2 1594 aa30.67■■■□□ 2.5
PPFIA1-216ENST00000530746 NACADO15069 1562 aa30.61■■■□□ 2.49
PPFIA1-216ENST00000530746 DCAF8L2P0C7V8 631 aa30.52■■■□□ 2.48
PPFIA1-216ENST00000530746 ZCCHC6Q5VYS8 1495 aaKnown RBP30.39■■■□□ 2.46
PPFIA1-216ENST00000530746 MYO15BQ96JP2 1530 aa30.39■■■□□ 2.46
PPFIA1-216ENST00000530746 DCAF1Q9Y4B6 1507 aa30.22■■■□□ 2.43
PPFIA1-216ENST00000530746 UNC13AQ9UPW8 1703 aa30.05■■■□□ 2.4
PPFIA1-216ENST00000530746 PABPN1Q86U42 306 aaKnown RBP eCLIP29.77■■■□□ 2.36
PPFIA1-216ENST00000530746 BICRAQ9NZM4 1560 aa29.75■■■□□ 2.35
PPFIA1-216ENST00000530746 SCRIBQ14160 1630 aa29.67■■■□□ 2.34
PPFIA1-216ENST00000530746 SHROOM4Q9ULL8 1493 aa29.42■■■□□ 2.3
PPFIA1-216ENST00000530746 DNAJC5BQ9UF47 199 aa29.36■■■□□ 2.29
PPFIA1-216ENST00000530746 EIF4G1Q04637 1599 aaKnown RBP28.97■■■□□ 2.23
PPFIA1-216ENST00000530746 CC2D2AQ9P2K1 1620 aa28.88■■■□□ 2.21
PPFIA1-216ENST00000530746 CECR2Q9BXF3 1484 aa28.67■■■□□ 2.18
PPFIA1-216ENST00000530746 SMARCA4P51532 1647 aa28.38■■■□□ 2.13
PPFIA1-216ENST00000530746 BAZ1AQ9NRL2 1556 aaPredicted RBP28.32■■■□□ 2.12
PPFIA1-216ENST00000530746 NCAPD3P42695 1498 aa28.22■■■□□ 2.11
PPFIA1-216ENST00000530746 ATAD2BQ9ULI0 1458 aa28.22■■■□□ 2.11
PPFIA1-216ENST00000530746 SMARCA2P51531 1590 aa28.2■■■□□ 2.11
PPFIA1-216ENST00000530746 MROH2BQ7Z745 1585 aa28.14■■■□□ 2.1
PPFIA1-216ENST00000530746 PEG3Q9GZU2 1588 aa28.11■■■□□ 2.09
PPFIA1-216ENST00000530746 HMGXB3Q12766 1538 aa28.1■■■□□ 2.09
PPFIA1-216ENST00000530746 BAZ1BQ9UIG0 1483 aaKnown RBP27.99■■■□□ 2.07
PPFIA1-216ENST00000530746 WIZO95785 1651 aa27.86■■■□□ 2.05
PPFIA1-216ENST00000530746 RSF1Q96T23 1441 aaPredicted RBP27.77■■■□□ 2.04
PPFIA1-216ENST00000530746 NESP48681 1621 aa27.58■■■□□ 2.01
PPFIA1-216ENST00000530746 TOP2AP11388 1531 aaKnown RBP27.53■■■□□ 2
PPFIA1-216ENST00000530746 LAMC3Q9Y6N6 1575 aa27.52■■■□□ 2
PPFIA1-216ENST00000530746 ERCC6Q03468 1493 aa27.51■■□□□ 1.99
PPFIA1-216ENST00000530746 CADPSQ9ULU8 1353 aa27.39■■□□□ 1.98
PPFIA1-216ENST00000530746 PDS5BQ9NTI5 1447 aa27.32■■□□□ 1.96
PPFIA1-216ENST00000530746 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
PPFIA1-216ENST00000530746 CUX2O14529 1486 aa27.26■■□□□ 1.95
PPFIA1-216ENST00000530746 CFTRP13569 1480 aa27.21■■□□□ 1.95
PPFIA1-216ENST00000530746 THOC2Q8NI27 1593 aaKnown RBP27.21■■□□□ 1.95
PPFIA1-216ENST00000530746 CCDC88BA6NC98 1476 aa27.2■■□□□ 1.95
PPFIA1-216ENST00000530746 PRDM2Q13029 1718 aa27.09■■□□□ 1.93
PPFIA1-216ENST00000530746 FANCD2Q9BXW9 1451 aa27.08■■□□□ 1.93
PPFIA1-216ENST00000530746 CEP164Q9UPV0 1460 aa27.06■■□□□ 1.92
PPFIA1-216ENST00000530746 MRC2Q9UBG0 1479 aa27.04■■□□□ 1.92
PPFIA1-216ENST00000530746 WDR62O43379 1518 aa26.97■■□□□ 1.91
PPFIA1-216ENST00000530746 SUPT5HO00267 1087 aaKnown RBP26.96■■□□□ 1.91
PPFIA1-216ENST00000530746 URB2Q14146 1524 aaKnown RBP26.82■■□□□ 1.88
PPFIA1-216ENST00000530746 ABCC8Q09428 1581 aa26.65■■□□□ 1.86
PPFIA1-216ENST00000530746 TOPBP1Q92547 1522 aa26.65■■□□□ 1.86
PPFIA1-216ENST00000530746 DNMBPQ6XZF7 1577 aa26.62■■□□□ 1.85
PPFIA1-216ENST00000530746 DNAJC5Q9H3Z4 198 aa26.53■■□□□ 1.84
PPFIA1-216ENST00000530746 IFT140Q96RY7 1462 aa26.49■■□□□ 1.83
PPFIA1-216ENST00000530746 POLA1P09884 1462 aaPredicted RBP26.41■■□□□ 1.82
PPFIA1-216ENST00000530746 CUX1P39880 1505 aa26.4■■□□□ 1.82
PPFIA1-216ENST00000530746 TARBP1Q13395 1621 aaKnown RBP26.39■■□□□ 1.81
PPFIA1-216ENST00000530746 ZNF608Q9ULD9 1512 aaPredicted RBP26.39■■□□□ 1.81
PPFIA1-216ENST00000530746 FGD5Q6ZNL6 1462 aa26.33■■□□□ 1.81
PPFIA1-216ENST00000530746 EIF4G3O43432 1585 aaKnown RBP26.3■■□□□ 1.8
PPFIA1-216ENST00000530746 SOGA1O94964 1423 aa26.29■■□□□ 1.8
PPFIA1-216ENST00000530746 RAD54L2Q9Y4B4 1467 aa26.29■■□□□ 1.8
PPFIA1-216ENST00000530746 AQRO60306 1485 aaKnown RBP eCLIP26.22■■□□□ 1.79
PPFIA1-216ENST00000530746 WRNQ14191 1432 aaPredicted RBP eCLIP26.19■■□□□ 1.78
PPFIA1-216ENST00000530746 BIVM-ERCC5R4GMW8 1640 aa26.18■■□□□ 1.78
PPFIA1-216ENST00000530746 WDR97A6NE52 1622 aa26.17■■□□□ 1.78
PPFIA1-216ENST00000530746 TOP2BQ02880 1626 aa26.17■■□□□ 1.78
PPFIA1-216ENST00000530746 TDRD9Q8NDG6 1382 aaKnown RBP26.15■■□□□ 1.78
PPFIA1-216ENST00000530746 SYNJ1O43426 1573 aa26.15■■□□□ 1.78
PPFIA1-216ENST00000530746 OSCARQ8IYS5 282 aa26.1■■□□□ 1.77
PPFIA1-216ENST00000530746 ABCA10Q8WWZ4 1543 aa26.07■■□□□ 1.76
PPFIA1-216ENST00000530746 CHD1O14646 1710 aa26.02■■□□□ 1.76
PPFIA1-216ENST00000530746 GRIN2BQ13224 1484 aa26■■□□□ 1.75
PPFIA1-216ENST00000530746 PBRM1Q86U86 1689 aa25.99■■□□□ 1.75
PPFIA1-216ENST00000530746 ABCA5Q8WWZ7 1642 aa25.99■■□□□ 1.75
PPFIA1-216ENST00000530746 GAPVD1Q14C86 1478 aa25.99■■□□□ 1.75
PPFIA1-216ENST00000530746 SNAPC4Q5SXM2 1469 aa25.98■■□□□ 1.75
PPFIA1-216ENST00000530746 MAGI1Q96QZ7 1491 aaPredicted RBP25.96■■□□□ 1.75
PPFIA1-216ENST00000530746 FBLN2P98095 1184 aa25.91■■□□□ 1.74
PPFIA1-216ENST00000530746 SYNJ2O15056 1496 aa25.85■■□□□ 1.73
PPFIA1-216ENST00000530746 CHMP7Q8WUX9 453 aaPredicted RBP25.83■■□□□ 1.73
PPFIA1-216ENST00000530746 ERICH3Q5RHP9 1530 aa25.77■■□□□ 1.72
PPFIA1-216ENST00000530746 ADAMTS12P58397 1594 aa25.75■■□□□ 1.71
PPFIA1-216ENST00000530746 RIMBP3CA6NJZ7 1639 aa25.73■■□□□ 1.71
PPFIA1-216ENST00000530746 RIMBP3BA6NNM3 1639 aa25.73■■□□□ 1.71
PPFIA1-216ENST00000530746 RIMBP3Q9UFD9 1639 aa25.73■■□□□ 1.71
PPFIA1-216ENST00000530746 CLASP1Q7Z460 1538 aa25.7■■□□□ 1.7
PPFIA1-216ENST00000530746 ARHGEF11O15085 1522 aa25.69■■□□□ 1.7
PPFIA1-216ENST00000530746 FHAD1B1AJZ9 1412 aa25.68■■□□□ 1.7
PPFIA1-216ENST00000530746 GRIN2AQ12879 1464 aa25.67■■□□□ 1.7
PPFIA1-216ENST00000530746 KIF27Q86VH2 1401 aa25.65■■□□□ 1.7
PPFIA1-216ENST00000530746 TRIM41Q8WV44 630 aa25.6■■□□□ 1.69
PPFIA1-216ENST00000530746 CEP170Q5SW79 1584 aa25.56■■□□□ 1.68
PPFIA1-216ENST00000530746 NUP160Q12769 1436 aa25.55■■□□□ 1.68
PPFIA1-216ENST00000530746 IGF1RP08069 1367 aa25.55■■□□□ 1.68
PPFIA1-216ENST00000530746 CUL7Q14999 1698 aa25.54■■□□□ 1.68
PPFIA1-216ENST00000530746 ARAP1Q96P48 1450 aa25.47■■□□□ 1.67
PPFIA1-216ENST00000530746 CYB5RLQ6IPT4 315 aa25.44■■□□□ 1.66
PPFIA1-216ENST00000530746 SHROOM2Q13796 1616 aa25.41■■□□□ 1.66
PPFIA1-216ENST00000530746 CARMIL1Q5VZK9 1371 aa25.4■■□□□ 1.66
PPFIA1-216ENST00000530746 RUSC2Q8N2Y8 1516 aa25.38■■□□□ 1.65
PPFIA1-216ENST00000530746 ERCC6L2Q5T890 1561 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms