RNA–Protein interactions for RNA: ENST00000530695.1

PKP3-207, Transcript of plakophilin 3, humanhuman

TSL 5

Gene PKP3, Length 441 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-207ENST00000530695 NISCHQ9Y2I1 1504 aa42.4■■■■■ 4.38
PKP3-207ENST00000530695 CCDC180Q9P1Z9 1646 aa38.03■■■■□ 3.68
PKP3-207ENST00000530695 ABCC9O60706 1549 aa37.82■■■■□ 3.64
PKP3-207ENST00000530695 RB1CC1Q8TDY2 1594 aa36.1■■■■□ 3.37
PKP3-207ENST00000530695 NACADO15069 1562 aa35.88■■■■□ 3.33
PKP3-207ENST00000530695 DCAF8L2P0C7V8 631 aa35.71■■■■□ 3.31
PKP3-207ENST00000530695 MYO15BQ96JP2 1530 aa35.42■■■■□ 3.26
PKP3-207ENST00000530695 UNC13AQ9UPW8 1703 aa35.37■■■■□ 3.25
PKP3-207ENST00000530695 DNAJC5BQ9UF47 199 aa35.28■■■■□ 3.24
PKP3-207ENST00000530695 PABPN1Q86U42 306 aaKnown RBP eCLIP35.21■■■■□ 3.23
PKP3-207ENST00000530695 ZCCHC6Q5VYS8 1495 aaKnown RBP35.16■■■■□ 3.22
PKP3-207ENST00000530695 BICRAQ9NZM4 1560 aa35.03■■■■□ 3.2
PKP3-207ENST00000530695 DCAF1Q9Y4B6 1507 aa35.02■■■■□ 3.2
PKP3-207ENST00000530695 SCRIBQ14160 1630 aa34.66■■■■□ 3.14
PKP3-207ENST00000530695 SHROOM4Q9ULL8 1493 aa34.55■■■■□ 3.12
PKP3-207ENST00000530695 CC2D2AQ9P2K1 1620 aa34.2■■■■□ 3.07
PKP3-207ENST00000530695 EIF4G1Q04637 1599 aaKnown RBP34.15■■■■□ 3.06
PKP3-207ENST00000530695 CECR2Q9BXF3 1484 aa34.04■■■■□ 3.04
PKP3-207ENST00000530695 NCAPD3P42695 1498 aa33.08■■■□□ 2.89
PKP3-207ENST00000530695 SMARCA4P51532 1647 aa33.07■■■□□ 2.88
PKP3-207ENST00000530695 ATAD2BQ9ULI0 1458 aa33.02■■■□□ 2.88
PKP3-207ENST00000530695 SMARCA2P51531 1590 aa32.96■■■□□ 2.87
PKP3-207ENST00000530695 BAZ1AQ9NRL2 1556 aaPredicted RBP32.92■■■□□ 2.86
PKP3-207ENST00000530695 HMGXB3Q12766 1538 aa32.88■■■□□ 2.85
PKP3-207ENST00000530695 PEG3Q9GZU2 1588 aa32.73■■■□□ 2.83
PKP3-207ENST00000530695 BAZ1BQ9UIG0 1483 aaKnown RBP32.73■■■□□ 2.83
PKP3-207ENST00000530695 MROH2BQ7Z745 1585 aa32.67■■■□□ 2.82
PKP3-207ENST00000530695 ERCC6Q03468 1493 aa32.65■■■□□ 2.82
PKP3-207ENST00000530695 NESP48681 1621 aa32.53■■■□□ 2.8
PKP3-207ENST00000530695 CUX2O14529 1486 aa32.52■■■□□ 2.8
PKP3-207ENST00000530695 LAMC3Q9Y6N6 1575 aa32.36■■■□□ 2.77
PKP3-207ENST00000530695 WIZO95785 1651 aa32.34■■■□□ 2.77
PKP3-207ENST00000530695 DNAJC5Q9H3Z4 198 aa32.28■■■□□ 2.76
PKP3-207ENST00000530695 THOC2Q8NI27 1593 aaKnown RBP32.2■■■□□ 2.75
PKP3-207ENST00000530695 KIF21AQ7Z4S6 1674 aa32.2■■■□□ 2.74
PKP3-207ENST00000530695 PDS5BQ9NTI5 1447 aa32.13■■■□□ 2.73
PKP3-207ENST00000530695 CADPSQ9ULU8 1353 aa32.08■■■□□ 2.73
PKP3-207ENST00000530695 RSF1Q96T23 1441 aaPredicted RBP32.03■■■□□ 2.72
PKP3-207ENST00000530695 TOP2AP11388 1531 aaKnown RBP31.9■■■□□ 2.7
PKP3-207ENST00000530695 MRC2Q9UBG0 1479 aa31.85■■■□□ 2.69
PKP3-207ENST00000530695 WDR62O43379 1518 aa31.78■■■□□ 2.68
PKP3-207ENST00000530695 CEP164Q9UPV0 1460 aa31.77■■■□□ 2.68
PKP3-207ENST00000530695 CFTRP13569 1480 aa31.76■■■□□ 2.67
PKP3-207ENST00000530695 FANCD2Q9BXW9 1451 aa31.74■■■□□ 2.67
PKP3-207ENST00000530695 PRDM2Q13029 1718 aa31.61■■■□□ 2.65
PKP3-207ENST00000530695 CCDC88BA6NC98 1476 aa31.53■■■□□ 2.64
PKP3-207ENST00000530695 URB2Q14146 1524 aaKnown RBP31.47■■■□□ 2.63
PKP3-207ENST00000530695 TOPBP1Q92547 1522 aa31.17■■■□□ 2.58
PKP3-207ENST00000530695 IFT140Q96RY7 1462 aa31.12■■■□□ 2.57
PKP3-207ENST00000530695 ABCC8Q09428 1581 aa31.12■■■□□ 2.57
PKP3-207ENST00000530695 DNMBPQ6XZF7 1577 aa31.09■■■□□ 2.57
PKP3-207ENST00000530695 ZNF608Q9ULD9 1512 aaPredicted RBP31.05■■■□□ 2.56
PKP3-207ENST00000530695 OSCARQ8IYS5 282 aa31.05■■■□□ 2.56
PKP3-207ENST00000530695 TRIM41Q8WV44 630 aa30.96■■■□□ 2.55
PKP3-207ENST00000530695 EIF4G3O43432 1585 aaKnown RBP30.93■■■□□ 2.54
PKP3-207ENST00000530695 TARBP1Q13395 1621 aaKnown RBP30.9■■■□□ 2.54
PKP3-207ENST00000530695 POLA1P09884 1462 aaPredicted RBP30.85■■■□□ 2.53
PKP3-207ENST00000530695 AQRO60306 1485 aaKnown RBP eCLIP30.79■■■□□ 2.525e-6■■■□□ 19.2
PKP3-207ENST00000530695 SUPT5HO00267 1087 aaKnown RBP30.76■■■□□ 2.51
PKP3-207ENST00000530695 RAD54L2Q9Y4B4 1467 aa30.74■■■□□ 2.51
PKP3-207ENST00000530695 CHD1O14646 1710 aa30.72■■■□□ 2.51
PKP3-207ENST00000530695 SOGA1O94964 1423 aa30.71■■■□□ 2.51
PKP3-207ENST00000530695 CUX1P39880 1505 aa30.69■■■□□ 2.5
PKP3-207ENST00000530695 FGD5Q6ZNL6 1462 aa30.69■■■□□ 2.5
PKP3-207ENST00000530695 RIMBP3CA6NJZ7 1639 aa30.68■■■□□ 2.5
PKP3-207ENST00000530695 RIMBP3BA6NNM3 1639 aa30.68■■■□□ 2.5
PKP3-207ENST00000530695 RIMBP3Q9UFD9 1639 aa30.68■■■□□ 2.5
PKP3-207ENST00000530695 TDRD9Q8NDG6 1382 aaKnown RBP30.62■■■□□ 2.49
PKP3-207ENST00000530695 WDR97A6NE52 1622 aa30.6■■■□□ 2.49
PKP3-207ENST00000530695 ARHGEF11O15085 1522 aa30.57■■■□□ 2.49
PKP3-207ENST00000530695 FBLN2P98095 1184 aa30.56■■■□□ 2.48
PKP3-207ENST00000530695 SNAPC4Q5SXM2 1469 aa30.49■■■□□ 2.47
PKP3-207ENST00000530695 GRIN2BQ13224 1484 aa30.43■■■□□ 2.46
PKP3-207ENST00000530695 MAGI1Q96QZ7 1491 aaPredicted RBP30.42■■■□□ 2.46
PKP3-207ENST00000530695 PBRM1Q86U86 1689 aa30.41■■■□□ 2.46
PKP3-207ENST00000530695 CHMP7Q8WUX9 453 aaPredicted RBP30.35■■■□□ 2.45
PKP3-207ENST00000530695 GAPVD1Q14C86 1478 aa30.35■■■□□ 2.45
PKP3-207ENST00000530695 ABCA10Q8WWZ4 1543 aa30.35■■■□□ 2.45
PKP3-207ENST00000530695 CYB5RLQ6IPT4 315 aa30.32■■■□□ 2.44
PKP3-207ENST00000530695 ABCA5Q8WWZ7 1642 aa30.32■■■□□ 2.44
PKP3-207ENST00000530695 SYNJ1O43426 1573 aa30.32■■■□□ 2.44
PKP3-207ENST00000530695 SYNJ2O15056 1496 aa30.31■■■□□ 2.44
PKP3-207ENST00000530695 CLASP1Q7Z460 1538 aa30.3■■■□□ 2.44
PKP3-207ENST00000530695 BIVM-ERCC5R4GMW8 1640 aa30.29■■■□□ 2.44
PKP3-207ENST00000530695 ARAP1Q96P48 1450 aa30.26■■■□□ 2.44
PKP3-207ENST00000530695 TOP2BQ02880 1626 aa30.26■■■□□ 2.44
PKP3-207ENST00000530695 WRNQ14191 1432 aaPredicted RBP eCLIP30.25■■■□□ 2.43
PKP3-207ENST00000530695 ADAMTS12P58397 1594 aa30.07■■■□□ 2.4
PKP3-207ENST00000530695 GRIN2AQ12879 1464 aa30.05■■■□□ 2.4
PKP3-207ENST00000530695 ERICH3Q5RHP9 1530 aa29.98■■■□□ 2.39
PKP3-207ENST00000530695 FHAD1B1AJZ9 1412 aa29.96■■■□□ 2.39
PKP3-207ENST00000530695 CEP170Q5SW79 1584 aa29.94■■■□□ 2.38
PKP3-207ENST00000530695 TRHP20396 242 aaPredicted RBP29.94■■■□□ 2.38
PKP3-207ENST00000530695 NUP160Q12769 1436 aa29.92■■■□□ 2.38
PKP3-207ENST00000530695 ERCC6L2Q5T890 1561 aa29.84■■■□□ 2.37
PKP3-207ENST00000530695 SHROOM2Q13796 1616 aa29.82■■■□□ 2.36
PKP3-207ENST00000530695 KIF27Q86VH2 1401 aa29.65■■■□□ 2.34
PKP3-207ENST00000530695 RUSC2Q8N2Y8 1516 aa29.65■■■□□ 2.34
PKP3-207ENST00000530695 PRG4Q92954 1404 aaPredicted RBP29.62■■■□□ 2.33
PKP3-207ENST00000530695 CUL7Q14999 1698 aa29.62■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms