RNA–Protein interactions for RNA: ENST00000530521.1

USP35-205, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 2

Gene USP35, Length 598 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-205ENST00000530521 NISCHQ9Y2I1 1504 aa21.9■■□□□ 1.1
USP35-205ENST00000530521 ABCC9O60706 1549 aa20.12■□□□□ 0.81
USP35-205ENST00000530521 CCDC180Q9P1Z9 1646 aa19.69■□□□□ 0.74
USP35-205ENST00000530521 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
USP35-205ENST00000530521 RB1CC1Q8TDY2 1594 aa18.91■□□□□ 0.62
USP35-205ENST00000530521 DCAF8L2P0C7V8 631 aa18.85■□□□□ 0.61
USP35-205ENST00000530521 PABPN1Q86U42 306 aaKnown RBP eCLIP18.78■□□□□ 0.6
USP35-205ENST00000530521 NACADO15069 1562 aa18.69■□□□□ 0.58
USP35-205ENST00000530521 UNC13AQ9UPW8 1703 aa18.62■□□□□ 0.57
USP35-205ENST00000530521 BICRAQ9NZM4 1560 aa18.43■□□□□ 0.54
USP35-205ENST00000530521 MYO15BQ96JP2 1530 aa18.28■□□□□ 0.52
USP35-205ENST00000530521 CC2D2AQ9P2K1 1620 aa18.12■□□□□ 0.49
USP35-205ENST00000530521 CECR2Q9BXF3 1484 aa18.08■□□□□ 0.49
USP35-205ENST00000530521 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
USP35-205ENST00000530521 ZCCHC6Q5VYS8 1495 aaKnown RBP18.05■□□□□ 0.48
USP35-205ENST00000530521 SHROOM4Q9ULL8 1493 aa18.03■□□□□ 0.48
USP35-205ENST00000530521 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
USP35-205ENST00000530521 DCAF1Q9Y4B6 1507 aa17.97■□□□□ 0.47
USP35-205ENST00000530521 DNAJC5Q9H3Z4 198 aa17.73■□□□□ 0.43
USP35-205ENST00000530521 ERCC6Q03468 1493 aa17.32■□□□□ 0.36
USP35-205ENST00000530521 CUX2O14529 1486 aa17.3■□□□□ 0.36
USP35-205ENST00000530521 NCAPD3P42695 1498 aa17.29■□□□□ 0.36
USP35-205ENST00000530521 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
USP35-205ENST00000530521 NESP48681 1621 aa17.23■□□□□ 0.35
USP35-205ENST00000530521 SMARCA4P51532 1647 aa17.14■□□□□ 0.33
USP35-205ENST00000530521 SMARCA2P51531 1590 aa17.11■□□□□ 0.33
USP35-205ENST00000530521 HMGXB3Q12766 1538 aa17.07■□□□□ 0.32
USP35-205ENST00000530521 BAZ1BQ9UIG0 1483 aaKnown RBP17.04■□□□□ 0.32
USP35-205ENST00000530521 THOC2Q8NI27 1593 aaKnown RBP16.99■□□□□ 0.31
USP35-205ENST00000530521 BAZ1AQ9NRL2 1556 aaPredicted RBP16.98■□□□□ 0.31
USP35-205ENST00000530521 KIF21AQ7Z4S6 1674 aa16.97■□□□□ 0.31
USP35-205ENST00000530521 TRIM41Q8WV44 630 aa16.94■□□□□ 0.3
USP35-205ENST00000530521 MROH2BQ7Z745 1585 aa16.94■□□□□ 0.3
USP35-205ENST00000530521 LAMC3Q9Y6N6 1575 aa16.92■□□□□ 0.3
USP35-205ENST00000530521 PEG3Q9GZU2 1588 aa16.9■□□□□ 0.3
USP35-205ENST00000530521 PDS5BQ9NTI5 1447 aa16.85■□□□□ 0.29
USP35-205ENST00000530521 CADPSQ9ULU8 1353 aa16.78■□□□□ 0.28
USP35-205ENST00000530521 WIZO95785 1651 aa16.76■□□□□ 0.27
USP35-205ENST00000530521 MRC2Q9UBG0 1479 aa16.73■□□□□ 0.27
USP35-205ENST00000530521 WDR62O43379 1518 aa16.67■□□□□ 0.26
USP35-205ENST00000530521 CEP164Q9UPV0 1460 aa16.61■□□□□ 0.25
USP35-205ENST00000530521 OSCARQ8IYS5 282 aa16.6■□□□□ 0.25
USP35-205ENST00000530521 FANCD2Q9BXW9 1451 aa16.6■□□□□ 0.25
USP35-205ENST00000530521 URB2Q14146 1524 aaKnown RBP16.5■□□□□ 0.23
USP35-205ENST00000530521 CFTRP13569 1480 aa16.5■□□□□ 0.23
USP35-205ENST00000530521 RSF1Q96T23 1441 aaPredicted RBP16.46■□□□□ 0.23
USP35-205ENST00000530521 TOP2AP11388 1531 aaKnown RBP16.4■□□□□ 0.22
USP35-205ENST00000530521 RIMBP3CA6NJZ7 1639 aa16.39■□□□□ 0.21
USP35-205ENST00000530521 RIMBP3BA6NNM3 1639 aa16.39■□□□□ 0.21
USP35-205ENST00000530521 RIMBP3Q9UFD9 1639 aa16.39■□□□□ 0.21
USP35-205ENST00000530521 ZNF608Q9ULD9 1512 aaPredicted RBP16.38■□□□□ 0.21
USP35-205ENST00000530521 PRDM2Q13029 1718 aa16.34■□□□□ 0.21
USP35-205ENST00000530521 CCDC88BA6NC98 1476 aa16.31■□□□□ 0.2
USP35-205ENST00000530521 CYB5RLQ6IPT4 315 aa16.3■□□□□ 0.2
USP35-205ENST00000530521 ARHGEF11O15085 1522 aa16.27■□□□□ 0.2
USP35-205ENST00000530521 IFT140Q96RY7 1462 aa16.27■□□□□ 0.19
USP35-205ENST00000530521 TOPBP1Q92547 1522 aa16.25■□□□□ 0.19
USP35-205ENST00000530521 FBLN2P98095 1184 aa16.22■□□□□ 0.19
USP35-205ENST00000530521 AQRO60306 1485 aaKnown RBP eCLIP16.22■□□□□ 0.19
USP35-205ENST00000530521 CHD1O14646 1710 aa16.2■□□□□ 0.18
USP35-205ENST00000530521 TRHP20396 242 aaPredicted RBP16.2■□□□□ 0.18
USP35-205ENST00000530521 EIF4G3O43432 1585 aaKnown RBP16.2■□□□□ 0.18
USP35-205ENST00000530521 TARBP1Q13395 1621 aaKnown RBP16.14■□□□□ 0.17
USP35-205ENST00000530521 DNMBPQ6XZF7 1577 aa16.13■□□□□ 0.17
USP35-205ENST00000530521 ABCC8Q09428 1581 aa16.13■□□□□ 0.17
USP35-205ENST00000530521 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
USP35-205ENST00000530521 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
USP35-205ENST00000530521 TDRD9Q8NDG6 1382 aaKnown RBP16.08■□□□□ 0.16
USP35-205ENST00000530521 POLA1P09884 1462 aaPredicted RBP16.07■□□□□ 0.16
USP35-205ENST00000530521 SOGA1O94964 1423 aa16.03■□□□□ 0.16
USP35-205ENST00000530521 CHMP7Q8WUX9 453 aaPredicted RBP15.99■□□□□ 0.15
USP35-205ENST00000530521 SNAPC4Q5SXM2 1469 aa15.97■□□□□ 0.15
USP35-205ENST00000530521 FGD5Q6ZNL6 1462 aa15.95■□□□□ 0.14
USP35-205ENST00000530521 CLASP1Q7Z460 1538 aa15.92■□□□□ 0.14
USP35-205ENST00000530521 CUX1P39880 1505 aa15.9■□□□□ 0.14
USP35-205ENST00000530521 AEBP2Q6ZN18 517 aaPredicted RBP15.9■□□□□ 0.14
USP35-205ENST00000530521 SYNJ1O43426 1573 aa15.87■□□□□ 0.13
USP35-205ENST00000530521 GRIN2BQ13224 1484 aa15.85■□□□□ 0.13
USP35-205ENST00000530521 MAGI1Q96QZ7 1491 aaPredicted RBP15.84■□□□□ 0.13
USP35-205ENST00000530521 PBRM1Q86U86 1689 aa15.83■□□□□ 0.13
USP35-205ENST00000530521 SYNJ2O15056 1496 aa15.83■□□□□ 0.12
USP35-205ENST00000530521 WDR97A6NE52 1622 aa15.83■□□□□ 0.12
USP35-205ENST00000530521 GAPVD1Q14C86 1478 aa15.8■□□□□ 0.12
USP35-205ENST00000530521 ERCC6L2Q5T890 1561 aa15.78■□□□□ 0.12
USP35-205ENST00000530521 SUPT5HO00267 1087 aaKnown RBP15.71■□□□□ 0.11
USP35-205ENST00000530521 ABCA5Q8WWZ7 1642 aa15.71■□□□□ 0.11
USP35-205ENST00000530521 ABCA10Q8WWZ4 1543 aa15.7■□□□□ 0.1
USP35-205ENST00000530521 GRIN2AQ12879 1464 aa15.66■□□□□ 0.1
USP35-205ENST00000530521 CEP170Q5SW79 1584 aa15.66■□□□□ 0.1
USP35-205ENST00000530521 WRNQ14191 1432 aaPredicted RBP eCLIP15.6■□□□□ 0.09
USP35-205ENST00000530521 KIF13AQ9H1H9 1805 aa15.6■□□□□ 0.09
USP35-205ENST00000530521 ADAMTS12P58397 1594 aa15.6■□□□□ 0.09
USP35-205ENST00000530521 NUP160Q12769 1436 aa15.6■□□□□ 0.09
USP35-205ENST00000530521 SHROOM2Q13796 1616 aa15.57■□□□□ 0.08
USP35-205ENST00000530521 JPH4Q96JJ6 628 aa15.56■□□□□ 0.08
USP35-205ENST00000530521 FHAD1B1AJZ9 1412 aa15.56■□□□□ 0.08
USP35-205ENST00000530521 PRG4Q92954 1404 aaPredicted RBP15.54■□□□□ 0.08
USP35-205ENST00000530521 TOP2BQ02880 1626 aa15.54■□□□□ 0.08
USP35-205ENST00000530521 BIVM-ERCC5R4GMW8 1640 aa15.54■□□□□ 0.08
USP35-205ENST00000530521 FAM69CQ0P6D2 419 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms