RNA–Protein interactions for RNA: ENST00000529714.5

SMCO4-205, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

TSL 3

Gene SMCO4, Length 355 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-205ENST00000529714 NISCHQ9Y2I1 1504 aa32.35■■■□□ 2.77
SMCO4-205ENST00000529714 CCDC180Q9P1Z9 1646 aa28.61■■■□□ 2.17
SMCO4-205ENST00000529714 ABCC9O60706 1549 aa27.41■■□□□ 1.98
SMCO4-205ENST00000529714 ZCCHC6Q5VYS8 1495 aaKnown RBP27.06■■□□□ 1.92
SMCO4-205ENST00000529714 DCAF1Q9Y4B6 1507 aa26.85■■□□□ 1.89
SMCO4-205ENST00000529714 MYO15BQ96JP2 1530 aa26.8■■□□□ 1.88
SMCO4-205ENST00000529714 NACADO15069 1562 aa26.75■■□□□ 1.87
SMCO4-205ENST00000529714 DCAF8L2P0C7V8 631 aa26.69■■□□□ 1.86
SMCO4-205ENST00000529714 RB1CC1Q8TDY2 1594 aa26.66■■□□□ 1.86
SMCO4-205ENST00000529714 SCRIBQ14160 1630 aa26.05■■□□□ 1.76
SMCO4-205ENST00000529714 UNC13AQ9UPW8 1703 aa26.05■■□□□ 1.76
SMCO4-205ENST00000529714 BICRAQ9NZM4 1560 aa25.82■■□□□ 1.72
SMCO4-205ENST00000529714 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
SMCO4-205ENST00000529714 PABPN1Q86U42 306 aaKnown RBP eCLIP25.64■■□□□ 1.7
SMCO4-205ENST00000529714 EIF4G1Q04637 1599 aaKnown RBP25.1■■□□□ 1.61
SMCO4-205ENST00000529714 CECR2Q9BXF3 1484 aa25.09■■□□□ 1.61
SMCO4-205ENST00000529714 BAZ1AQ9NRL2 1556 aaPredicted RBP25.05■■□□□ 1.6
SMCO4-205ENST00000529714 SMARCA4P51532 1647 aa25.01■■□□□ 1.59
SMCO4-205ENST00000529714 MROH2BQ7Z745 1585 aa24.91■■□□□ 1.58
SMCO4-205ENST00000529714 CC2D2AQ9P2K1 1620 aa24.86■■□□□ 1.57
SMCO4-205ENST00000529714 RSF1Q96T23 1441 aaPredicted RBP24.8■■□□□ 1.56
SMCO4-205ENST00000529714 PEG3Q9GZU2 1588 aa24.8■■□□□ 1.56
SMCO4-205ENST00000529714 SMARCA2P51531 1590 aa24.76■■□□□ 1.55
SMCO4-205ENST00000529714 ATAD2BQ9ULI0 1458 aa24.73■■□□□ 1.55
SMCO4-205ENST00000529714 DNAJC5BQ9UF47 199 aa24.68■■□□□ 1.54
SMCO4-205ENST00000529714 NCAPD3P42695 1498 aa24.67■■□□□ 1.54
SMCO4-205ENST00000529714 WIZO95785 1651 aa24.66■■□□□ 1.54
SMCO4-205ENST00000529714 HMGXB3Q12766 1538 aa24.61■■□□□ 1.53
SMCO4-205ENST00000529714 BAZ1BQ9UIG0 1483 aaKnown RBP24.55■■□□□ 1.52
SMCO4-205ENST00000529714 TOP2AP11388 1531 aaKnown RBP24.47■■□□□ 1.51
SMCO4-205ENST00000529714 SUPT5HO00267 1087 aaKnown RBP24.44■■□□□ 1.5
SMCO4-205ENST00000529714 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.46
SMCO4-205ENST00000529714 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.43
SMCO4-205ENST00000529714 CADPSQ9ULU8 1353 aa23.95■■□□□ 1.42
SMCO4-205ENST00000529714 CFTRP13569 1480 aa23.93■■□□□ 1.42
SMCO4-205ENST00000529714 NESP48681 1621 aa23.85■■□□□ 1.41
SMCO4-205ENST00000529714 PRDM2Q13029 1718 aa23.84■■□□□ 1.41
SMCO4-205ENST00000529714 PDS5BQ9NTI5 1447 aa23.76■■□□□ 1.39
SMCO4-205ENST00000529714 FANCD2Q9BXW9 1451 aa23.67■■□□□ 1.38
SMCO4-205ENST00000529714 KIF21AQ7Z4S6 1674 aa23.64■■□□□ 1.37
SMCO4-205ENST00000529714 ERCC6Q03468 1493 aa23.61■■□□□ 1.37
SMCO4-205ENST00000529714 CEP164Q9UPV0 1460 aa23.61■■□□□ 1.37
SMCO4-205ENST00000529714 MRC2Q9UBG0 1479 aa23.48■■□□□ 1.35
SMCO4-205ENST00000529714 THOC2Q8NI27 1593 aaKnown RBP23.46■■□□□ 1.35
SMCO4-205ENST00000529714 ABCC8Q09428 1581 aa23.43■■□□□ 1.34
SMCO4-205ENST00000529714 WDR62O43379 1518 aa23.4■■□□□ 1.34
SMCO4-205ENST00000529714 URB2Q14146 1524 aaKnown RBP23.39■■□□□ 1.34
SMCO4-205ENST00000529714 DNMBPQ6XZF7 1577 aa23.39■■□□□ 1.33
SMCO4-205ENST00000529714 WRNQ14191 1432 aaPredicted RBP eCLIP23.38■■□□□ 1.33
SMCO4-205ENST00000529714 TOPBP1Q92547 1522 aa23.35■■□□□ 1.33
SMCO4-205ENST00000529714 CUX1P39880 1505 aa23.34■■□□□ 1.33
SMCO4-205ENST00000529714 BIVM-ERCC5R4GMW8 1640 aa23.31■■□□□ 1.32
SMCO4-205ENST00000529714 TOP2BQ02880 1626 aa23.3■■□□□ 1.32
SMCO4-205ENST00000529714 SYNJ1O43426 1573 aa23.29■■□□□ 1.32
SMCO4-205ENST00000529714 CUX2O14529 1486 aa23.24■■□□□ 1.31
SMCO4-205ENST00000529714 FGD5Q6ZNL6 1462 aa23.19■■□□□ 1.3
SMCO4-205ENST00000529714 POLA1P09884 1462 aaPredicted RBP23.18■■□□□ 1.3
SMCO4-205ENST00000529714 CHIC1Q5VXU3 224 aa23.13■■□□□ 1.29
SMCO4-205ENST00000529714 TRIM41Q8WV44 630 aa23.11■■□□□ 1.29
SMCO4-205ENST00000529714 IFT140Q96RY7 1462 aa23.1■■□□□ 1.29
SMCO4-205ENST00000529714 SOGA1O94964 1423 aa23.08■■□□□ 1.29
SMCO4-205ENST00000529714 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
SMCO4-205ENST00000529714 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
SMCO4-205ENST00000529714 WDR97A6NE52 1622 aa23.02■■□□□ 1.28
SMCO4-205ENST00000529714 ABCA10Q8WWZ4 1543 aa23.02■■□□□ 1.28
SMCO4-205ENST00000529714 ZNF608Q9ULD9 1512 aaPredicted RBP22.9■■□□□ 1.26
SMCO4-205ENST00000529714 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
SMCO4-205ENST00000529714 EIF4G3O43432 1585 aaKnown RBP22.89■■□□□ 1.25
SMCO4-205ENST00000529714 KIF27Q86VH2 1401 aa22.86■■□□□ 1.25
SMCO4-205ENST00000529714 TDRD9Q8NDG6 1382 aaKnown RBP22.86■■□□□ 1.25
SMCO4-205ENST00000529714 GAPVD1Q14C86 1478 aa22.84■■□□□ 1.25
SMCO4-205ENST00000529714 AQRO60306 1485 aaKnown RBP eCLIP22.83■■□□□ 1.25
SMCO4-205ENST00000529714 EEA1Q15075 1411 aa22.79■■□□□ 1.24
SMCO4-205ENST00000529714 PBRM1Q86U86 1689 aa22.78■■□□□ 1.24
SMCO4-205ENST00000529714 GRIN2BQ13224 1484 aa22.78■■□□□ 1.24
SMCO4-205ENST00000529714 ERICH3Q5RHP9 1530 aa22.77■■□□□ 1.24
SMCO4-205ENST00000529714 RUSC2Q8N2Y8 1516 aa22.74■■□□□ 1.23
SMCO4-205ENST00000529714 MAGI1Q96QZ7 1491 aaPredicted RBP22.7■■□□□ 1.22
SMCO4-205ENST00000529714 IGF1RP08069 1367 aa22.68■■□□□ 1.22
SMCO4-205ENST00000529714 CUL7Q14999 1698 aa22.67■■□□□ 1.22
SMCO4-205ENST00000529714 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
SMCO4-205ENST00000529714 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
SMCO4-205ENST00000529714 CSRNP3Q8WYN3 585 aa22.61■■□□□ 1.21
SMCO4-205ENST00000529714 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
SMCO4-205ENST00000529714 SYNJ2O15056 1496 aa22.58■■□□□ 1.2
SMCO4-205ENST00000529714 CARMIL1Q5VZK9 1371 aa22.56■■□□□ 1.2
SMCO4-205ENST00000529714 PRXQ9BXM0 1461 aa22.55■■□□□ 1.2
SMCO4-205ENST00000529714 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
SMCO4-205ENST00000529714 KIF21BO75037 1637 aa22.5■■□□□ 1.19
SMCO4-205ENST00000529714 RAPGEF2Q9Y4G8 1499 aa22.5■■□□□ 1.19
SMCO4-205ENST00000529714 CHD1O14646 1710 aa22.49■■□□□ 1.19
SMCO4-205ENST00000529714 GRIN2AQ12879 1464 aa22.48■■□□□ 1.19
SMCO4-205ENST00000529714 CHMP7Q8WUX9 453 aaPredicted RBP22.48■■□□□ 1.19
SMCO4-205ENST00000529714 FBLN2P98095 1184 aa22.42■■□□□ 1.18
SMCO4-205ENST00000529714 GOLGA3Q08378 1498 aa22.38■■□□□ 1.17
SMCO4-205ENST00000529714 NUP160Q12769 1436 aa22.38■■□□□ 1.17
SMCO4-205ENST00000529714 CEP170Q5SW79 1584 aa22.35■■□□□ 1.17
SMCO4-205ENST00000529714 OSCARQ8IYS5 282 aa22.3■■□□□ 1.16
SMCO4-205ENST00000529714 CTTNBP2Q8WZ74 1663 aa22.3■■□□□ 1.16
SMCO4-205ENST00000529714 CLASP1Q7Z460 1538 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms