RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 NISCHQ9Y2I1 1504 aa35.86■■■■□ 3.33
HIF3A-213ENST00000529542 CCDC180Q9P1Z9 1646 aa32.2■■■□□ 2.75
HIF3A-213ENST00000529542 ABCC9O60706 1549 aa32.2■■■□□ 2.74
HIF3A-213ENST00000529542 RB1CC1Q8TDY2 1594 aa30.71■■■□□ 2.51
HIF3A-213ENST00000529542 NACADO15069 1562 aa30.51■■■□□ 2.47
HIF3A-213ENST00000529542 DCAF8L2P0C7V8 631 aa30.28■■■□□ 2.44
HIF3A-213ENST00000529542 DNAJC5BQ9UF47 199 aa30.25■■■□□ 2.43
HIF3A-213ENST00000529542 MYO15BQ96JP2 1530 aa30.14■■■□□ 2.42
HIF3A-213ENST00000529542 PABPN1Q86U42 306 aaKnown RBP eCLIP29.98■■■□□ 2.39
HIF3A-213ENST00000529542 UNC13AQ9UPW8 1703 aa29.85■■■□□ 2.37
HIF3A-213ENST00000529542 BICRAQ9NZM4 1560 aa29.73■■■□□ 2.35
HIF3A-213ENST00000529542 DCAF1Q9Y4B6 1507 aa29.7■■■□□ 2.34
HIF3A-213ENST00000529542 ZCCHC6Q5VYS8 1495 aaKnown RBP29.69■■■□□ 2.34
HIF3A-213ENST00000529542 SHROOM4Q9ULL8 1493 aa29.51■■■□□ 2.31
HIF3A-213ENST00000529542 SCRIBQ14160 1630 aa29.23■■■□□ 2.27
HIF3A-213ENST00000529542 CC2D2AQ9P2K1 1620 aa29.09■■■□□ 2.25
HIF3A-213ENST00000529542 CECR2Q9BXF3 1484 aa29.07■■■□□ 2.24
HIF3A-213ENST00000529542 EIF4G1Q04637 1599 aaKnown RBP29.04■■■□□ 2.24
HIF3A-213ENST00000529542 NCAPD3P42695 1498 aa28.18■■■□□ 2.1
HIF3A-213ENST00000529542 ATAD2BQ9ULI0 1458 aa28.03■■■□□ 2.08
HIF3A-213ENST00000529542 SMARCA2P51531 1590 aa27.99■■■□□ 2.07
HIF3A-213ENST00000529542 DNAJC5Q9H3Z4 198 aa27.95■■■□□ 2.06
HIF3A-213ENST00000529542 SMARCA4P51532 1647 aa27.95■■■□□ 2.06
HIF3A-213ENST00000529542 HMGXB3Q12766 1538 aa27.93■■■□□ 2.06
HIF3A-213ENST00000529542 CUX2O14529 1486 aa27.89■■■□□ 2.06
HIF3A-213ENST00000529542 ERCC6Q03468 1493 aa27.87■■■□□ 2.05
HIF3A-213ENST00000529542 BAZ1AQ9NRL2 1556 aaPredicted RBP27.86■■■□□ 2.05
HIF3A-213ENST00000529542 BAZ1BQ9UIG0 1483 aaKnown RBP27.76■■■□□ 2.03
HIF3A-213ENST00000529542 PEG3Q9GZU2 1588 aa27.74■■■□□ 2.03
HIF3A-213ENST00000529542 NESP48681 1621 aa27.61■■■□□ 2.01
HIF3A-213ENST00000529542 MROH2BQ7Z745 1585 aa27.57■■■□□ 2
HIF3A-213ENST00000529542 LAMC3Q9Y6N6 1575 aa27.52■■■□□ 2
HIF3A-213ENST00000529542 PDS5BQ9NTI5 1447 aa27.41■■□□□ 1.98
HIF3A-213ENST00000529542 THOC2Q8NI27 1593 aaKnown RBP27.36■■□□□ 1.97
HIF3A-213ENST00000529542 CADPSQ9ULU8 1353 aa27.32■■□□□ 1.96
HIF3A-213ENST00000529542 KIF21AQ7Z4S6 1674 aa27.24■■□□□ 1.95
HIF3A-213ENST00000529542 WIZO95785 1651 aa27.2■■□□□ 1.94
HIF3A-213ENST00000529542 MRC2Q9UBG0 1479 aa27.12■■□□□ 1.93
HIF3A-213ENST00000529542 WDR62O43379 1518 aa27.04■■□□□ 1.92
HIF3A-213ENST00000529542 RSF1Q96T23 1441 aaPredicted RBP27.03■■□□□ 1.92
HIF3A-213ENST00000529542 CEP164Q9UPV0 1460 aa27■■□□□ 1.91
HIF3A-213ENST00000529542 CFTRP13569 1480 aa26.98■■□□□ 1.91
HIF3A-213ENST00000529542 FANCD2Q9BXW9 1451 aa26.96■■□□□ 1.91
HIF3A-213ENST00000529542 TOP2AP11388 1531 aaKnown RBP26.93■■□□□ 1.9
HIF3A-213ENST00000529542 URB2Q14146 1524 aaKnown RBP26.7■■□□□ 1.86
HIF3A-213ENST00000529542 OSCARQ8IYS5 282 aa26.64■■□□□ 1.86
HIF3A-213ENST00000529542 CCDC88BA6NC98 1476 aa26.62■■□□□ 1.85
HIF3A-213ENST00000529542 PRDM2Q13029 1718 aa26.6■■□□□ 1.85
HIF3A-213ENST00000529542 TRIM41Q8WV44 630 aa26.59■■□□□ 1.85
HIF3A-213ENST00000529542 IFT140Q96RY7 1462 aa26.49■■□□□ 1.83
HIF3A-213ENST00000529542 ABCC8Q09428 1581 aa26.49■■□□□ 1.83
HIF3A-213ENST00000529542 TOPBP1Q92547 1522 aa26.43■■□□□ 1.82
HIF3A-213ENST00000529542 ZNF608Q9ULD9 1512 aaPredicted RBP26.35■■□□□ 1.81
HIF3A-213ENST00000529542 DNMBPQ6XZF7 1577 aa26.33■■□□□ 1.8
HIF3A-213ENST00000529542 EIF4G3O43432 1585 aaKnown RBP26.2■■□□□ 1.79
HIF3A-213ENST00000529542 TARBP1Q13395 1621 aaKnown RBP26.17■■□□□ 1.78
HIF3A-213ENST00000529542 RIMBP3CA6NJZ7 1639 aa26.15■■□□□ 1.78
HIF3A-213ENST00000529542 RIMBP3BA6NNM3 1639 aa26.15■■□□□ 1.78
HIF3A-213ENST00000529542 RIMBP3Q9UFD9 1639 aa26.15■■□□□ 1.78
HIF3A-213ENST00000529542 POLA1P09884 1462 aaPredicted RBP26.15■■□□□ 1.78
HIF3A-213ENST00000529542 AQRO60306 1485 aaKnown RBP eCLIP26.14■■□□□ 1.78
HIF3A-213ENST00000529542 ARHGEF11O15085 1522 aa26.1■■□□□ 1.77
HIF3A-213ENST00000529542 SOGA1O94964 1423 aa26.07■■□□□ 1.76
HIF3A-213ENST00000529542 FBLN2P98095 1184 aa26.02■■□□□ 1.76
HIF3A-213ENST00000529542 WDR97A6NE52 1622 aa26.01■■□□□ 1.75
HIF3A-213ENST00000529542 RAD54L2Q9Y4B4 1467 aa26.01■■□□□ 1.75
HIF3A-213ENST00000529542 TDRD9Q8NDG6 1382 aaKnown RBP25.99■■□□□ 1.75
HIF3A-213ENST00000529542 CHD1O14646 1710 aa25.99■■□□□ 1.75
HIF3A-213ENST00000529542 FGD5Q6ZNL6 1462 aa25.97■■□□□ 1.75
HIF3A-213ENST00000529542 CYB5RLQ6IPT4 315 aa25.95■■□□□ 1.74
HIF3A-213ENST00000529542 CUX1P39880 1505 aa25.91■■□□□ 1.74
HIF3A-213ENST00000529542 MAGI1Q96QZ7 1491 aaPredicted RBP25.88■■□□□ 1.73
HIF3A-213ENST00000529542 CHMP7Q8WUX9 453 aaPredicted RBP25.87■■□□□ 1.73
HIF3A-213ENST00000529542 GRIN2BQ13224 1484 aa25.86■■□□□ 1.73
HIF3A-213ENST00000529542 SNAPC4Q5SXM2 1469 aa25.86■■□□□ 1.73
HIF3A-213ENST00000529542 ARAP1Q96P48 1450 aa25.83■■□□□ 1.73
HIF3A-213ENST00000529542 SYNJ1O43426 1573 aa25.78■■□□□ 1.72
HIF3A-213ENST00000529542 SYNJ2O15056 1496 aa25.78■■□□□ 1.72
HIF3A-213ENST00000529542 SUPT5HO00267 1087 aaKnown RBP25.76■■□□□ 1.71
HIF3A-213ENST00000529542 CLASP1Q7Z460 1538 aa25.76■■□□□ 1.71
HIF3A-213ENST00000529542 GAPVD1Q14C86 1478 aa25.74■■□□□ 1.71
HIF3A-213ENST00000529542 ABCA10Q8WWZ4 1543 aa25.72■■□□□ 1.71
HIF3A-213ENST00000529542 TRHP20396 242 aaPredicted RBP25.69■■□□□ 1.7
HIF3A-213ENST00000529542 WRNQ14191 1432 aaPredicted RBP eCLIP25.64■■□□□ 1.7
HIF3A-213ENST00000529542 PBRM1Q86U86 1689 aa25.64■■□□□ 1.69
HIF3A-213ENST00000529542 ABCA5Q8WWZ7 1642 aa25.62■■□□□ 1.69
HIF3A-213ENST00000529542 TOP2BQ02880 1626 aa25.52■■□□□ 1.68
HIF3A-213ENST00000529542 BIVM-ERCC5R4GMW8 1640 aa25.49■■□□□ 1.67
HIF3A-213ENST00000529542 GRIN2AQ12879 1464 aa25.49■■□□□ 1.67
HIF3A-213ENST00000529542 FHAD1B1AJZ9 1412 aa25.45■■□□□ 1.66
HIF3A-213ENST00000529542 NUP160Q12769 1436 aa25.43■■□□□ 1.66
HIF3A-213ENST00000529542 ADAMTS12P58397 1594 aa25.43■■□□□ 1.66
HIF3A-213ENST00000529542 ERICH3Q5RHP9 1530 aa25.41■■□□□ 1.66
HIF3A-213ENST00000529542 CEP170Q5SW79 1584 aa25.35■■□□□ 1.65
HIF3A-213ENST00000529542 SHROOM2Q13796 1616 aa25.29■■□□□ 1.64
HIF3A-213ENST00000529542 ERCC6L2Q5T890 1561 aa25.27■■□□□ 1.64
HIF3A-213ENST00000529542 JPH4Q96JJ6 628 aa25.21■■□□□ 1.63
HIF3A-213ENST00000529542 PRG4Q92954 1404 aaPredicted RBP25.19■■□□□ 1.62
HIF3A-213ENST00000529542 KIF27Q86VH2 1401 aa25.08■■□□□ 1.61
HIF3A-213ENST00000529542 RUSC2Q8N2Y8 1516 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms