RNA–Protein interactions for RNA: ENST00000529540.5

NR1H3-231, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 2

Gene NR1H3, Length 1,673 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-231ENST00000529540 NISCHQ9Y2I1 1504 aa33.54■■■□□ 2.96
NR1H3-231ENST00000529540 CCDC180Q9P1Z9 1646 aa29.6■■■□□ 2.33
NR1H3-231ENST00000529540 ABCC9O60706 1549 aa28.24■■■□□ 2.11
NR1H3-231ENST00000529540 ZCCHC6Q5VYS8 1495 aaKnown RBP28.09■■■□□ 2.09
NR1H3-231ENST00000529540 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
NR1H3-231ENST00000529540 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
NR1H3-231ENST00000529540 DCAF8L2P0C7V8 631 aa27.71■■■□□ 2.03
NR1H3-231ENST00000529540 NACADO15069 1562 aa27.69■■■□□ 2.02
NR1H3-231ENST00000529540 RB1CC1Q8TDY2 1594 aa27.55■■■□□ 2
NR1H3-231ENST00000529540 SCRIBQ14160 1630 aa26.96■■□□□ 1.91
NR1H3-231ENST00000529540 UNC13AQ9UPW8 1703 aa26.8■■□□□ 1.88
NR1H3-231ENST00000529540 SHROOM4Q9ULL8 1493 aa26.77■■□□□ 1.88
NR1H3-231ENST00000529540 BICRAQ9NZM4 1560 aa26.59■■□□□ 1.85
NR1H3-231ENST00000529540 PABPN1Q86U42 306 aaKnown RBP eCLIP26.45■■□□□ 1.82
NR1H3-231ENST00000529540 BAZ1AQ9NRL2 1556 aaPredicted RBP26■■□□□ 1.75
NR1H3-231ENST00000529540 CECR2Q9BXF3 1484 aa25.97■■□□□ 1.75
NR1H3-231ENST00000529540 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.73
NR1H3-231ENST00000529540 SMARCA4P51532 1647 aa25.88■■□□□ 1.73
NR1H3-231ENST00000529540 MROH2BQ7Z745 1585 aa25.81■■□□□ 1.72
NR1H3-231ENST00000529540 RSF1Q96T23 1441 aaPredicted RBP25.77■■□□□ 1.72
NR1H3-231ENST00000529540 PEG3Q9GZU2 1588 aa25.67■■□□□ 1.7
NR1H3-231ENST00000529540 SMARCA2P51531 1590 aa25.65■■□□□ 1.7
NR1H3-231ENST00000529540 CC2D2AQ9P2K1 1620 aa25.6■■□□□ 1.69
NR1H3-231ENST00000529540 ATAD2BQ9ULI0 1458 aa25.58■■□□□ 1.69
NR1H3-231ENST00000529540 SUPT5HO00267 1087 aaKnown RBP25.55■■□□□ 1.68
NR1H3-231ENST00000529540 WIZO95785 1651 aa25.55■■□□□ 1.68
NR1H3-231ENST00000529540 NCAPD3P42695 1498 aa25.51■■□□□ 1.67
NR1H3-231ENST00000529540 HMGXB3Q12766 1538 aa25.47■■□□□ 1.67
NR1H3-231ENST00000529540 BAZ1BQ9UIG0 1483 aaKnown RBP25.44■■□□□ 1.66
NR1H3-231ENST00000529540 TOP2AP11388 1531 aaKnown RBP25.4■■□□□ 1.66
NR1H3-231ENST00000529540 DNAJC5BQ9UF47 199 aa25.24■■□□□ 1.63
NR1H3-231ENST00000529540 CCDC88BA6NC98 1476 aa25.05■■□□□ 1.6
NR1H3-231ENST00000529540 CADPSQ9ULU8 1353 aa24.8■■□□□ 1.56
NR1H3-231ENST00000529540 CFTRP13569 1480 aa24.78■■□□□ 1.56
NR1H3-231ENST00000529540 LAMC3Q9Y6N6 1575 aa24.76■■□□□ 1.55
NR1H3-231ENST00000529540 PRDM2Q13029 1718 aa24.65■■□□□ 1.54
NR1H3-231ENST00000529540 NESP48681 1621 aa24.59■■□□□ 1.53
NR1H3-231ENST00000529540 PDS5BQ9NTI5 1447 aa24.59■■□□□ 1.53
NR1H3-231ENST00000529540 FANCD2Q9BXW9 1451 aa24.5■■□□□ 1.51
NR1H3-231ENST00000529540 CEP164Q9UPV0 1460 aa24.43■■□□□ 1.5
NR1H3-231ENST00000529540 ERCC6Q03468 1493 aa24.37■■□□□ 1.49
NR1H3-231ENST00000529540 KIF21AQ7Z4S6 1674 aa24.35■■□□□ 1.49
NR1H3-231ENST00000529540 WRNQ14191 1432 aaPredicted RBP eCLIP24.33■■□□□ 1.49
NR1H3-231ENST00000529540 ABCC8Q09428 1581 aa24.31■■□□□ 1.48
NR1H3-231ENST00000529540 MRC2Q9UBG0 1479 aa24.25■■□□□ 1.47
NR1H3-231ENST00000529540 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
NR1H3-231ENST00000529540 DNMBPQ6XZF7 1577 aa24.22■■□□□ 1.47
NR1H3-231ENST00000529540 TOP2BQ02880 1626 aa24.19■■□□□ 1.46
NR1H3-231ENST00000529540 CUX1P39880 1505 aa24.18■■□□□ 1.46
NR1H3-231ENST00000529540 TRIM41Q8WV44 630 aa24.18■■□□□ 1.46
NR1H3-231ENST00000529540 BIVM-ERCC5R4GMW8 1640 aa24.18■■□□□ 1.46
NR1H3-231ENST00000529540 URB2Q14146 1524 aaKnown RBP24.16■■□□□ 1.46
NR1H3-231ENST00000529540 TOPBP1Q92547 1522 aa24.16■■□□□ 1.46
NR1H3-231ENST00000529540 SYNJ1O43426 1573 aa24.16■■□□□ 1.46
NR1H3-231ENST00000529540 WDR62O43379 1518 aa24.15■■□□□ 1.46
NR1H3-231ENST00000529540 THOC2Q8NI27 1593 aaKnown RBP24.14■■□□□ 1.46
NR1H3-231ENST00000529540 FGD5Q6ZNL6 1462 aa24.03■■□□□ 1.44
NR1H3-231ENST00000529540 POLA1P09884 1462 aaPredicted RBP24■■□□□ 1.43
NR1H3-231ENST00000529540 SOGA1O94964 1423 aa23.93■■□□□ 1.42
NR1H3-231ENST00000529540 CUX2O14529 1486 aa23.92■■□□□ 1.42
NR1H3-231ENST00000529540 IFT140Q96RY7 1462 aa23.9■■□□□ 1.42
NR1H3-231ENST00000529540 ABCA10Q8WWZ4 1543 aa23.87■■□□□ 1.41
NR1H3-231ENST00000529540 RAD54L2Q9Y4B4 1467 aa23.83■■□□□ 1.41
NR1H3-231ENST00000529540 TARBP1Q13395 1621 aaKnown RBP23.83■■□□□ 1.41
NR1H3-231ENST00000529540 EEA1Q15075 1411 aa23.82■■□□□ 1.4
NR1H3-231ENST00000529540 WDR97A6NE52 1622 aa23.82■■□□□ 1.4
NR1H3-231ENST00000529540 KIF27Q86VH2 1401 aa23.8■■□□□ 1.4
NR1H3-231ENST00000529540 ABCA5Q8WWZ7 1642 aa23.69■■□□□ 1.38
NR1H3-231ENST00000529540 GAPVD1Q14C86 1478 aa23.67■■□□□ 1.38
NR1H3-231ENST00000529540 TDRD9Q8NDG6 1382 aaKnown RBP23.67■■□□□ 1.38
NR1H3-231ENST00000529540 ZNF608Q9ULD9 1512 aaPredicted RBP23.63■■□□□ 1.37
NR1H3-231ENST00000529540 EIF4G3O43432 1585 aaKnown RBP23.63■■□□□ 1.37
NR1H3-231ENST00000529540 ERICH3Q5RHP9 1530 aa23.62■■□□□ 1.37
NR1H3-231ENST00000529540 RUSC2Q8N2Y8 1516 aa23.62■■□□□ 1.37
NR1H3-231ENST00000529540 GRIN2BQ13224 1484 aa23.6■■□□□ 1.37
NR1H3-231ENST00000529540 CSRNP3Q8WYN3 585 aa23.6■■□□□ 1.37
NR1H3-231ENST00000529540 AQRO60306 1485 aaKnown RBP eCLIP23.6■■□□□ 1.379e-8■■■■□ 21.2
NR1H3-231ENST00000529540 FAM9AQ8IZU1 332 aaPredicted RBP23.56■■□□□ 1.36
NR1H3-231ENST00000529540 IGF1RP08069 1367 aa23.55■■□□□ 1.36
NR1H3-231ENST00000529540 PBRM1Q86U86 1689 aa23.55■■□□□ 1.36
NR1H3-231ENST00000529540 HRCP23327 699 aa23.54■■□□□ 1.36
NR1H3-231ENST00000529540 CUL7Q14999 1698 aa23.53■■□□□ 1.36
NR1H3-231ENST00000529540 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
NR1H3-231ENST00000529540 PRXQ9BXM0 1461 aa23.46■■□□□ 1.35
NR1H3-231ENST00000529540 CARMIL1Q5VZK9 1371 aa23.45■■□□□ 1.35
NR1H3-231ENST00000529540 KIF21BO75037 1637 aa23.45■■□□□ 1.35
NR1H3-231ENST00000529540 FHAD1B1AJZ9 1412 aa23.44■■□□□ 1.34
NR1H3-231ENST00000529540 SNAPC4Q5SXM2 1469 aa23.43■■□□□ 1.34
NR1H3-231ENST00000529540 ADAMTS12P58397 1594 aa23.42■■□□□ 1.34
NR1H3-231ENST00000529540 RAPGEF2Q9Y4G8 1499 aa23.41■■□□□ 1.34
NR1H3-231ENST00000529540 GOLGA3Q08378 1498 aa23.38■■□□□ 1.33
NR1H3-231ENST00000529540 SYNJ2O15056 1496 aa23.37■■□□□ 1.33
NR1H3-231ENST00000529540 CHMP7Q8WUX9 453 aaPredicted RBP23.3■■□□□ 1.32
NR1H3-231ENST00000529540 GRIN2AQ12879 1464 aa23.28■■□□□ 1.32
NR1H3-231ENST00000529540 UBTFP17480 764 aaKnown RBP23.22■■□□□ 1.31
NR1H3-231ENST00000529540 FBLN2P98095 1184 aa23.22■■□□□ 1.31
NR1H3-231ENST00000529540 TNIKQ9UKE5 1360 aa23.19■■□□□ 1.3
NR1H3-231ENST00000529540 CHD1O14646 1710 aa23.17■■□□□ 1.3
NR1H3-231ENST00000529540 LOC105371045A0A1W2PR82 267 aa23.16■■□□□ 1.3
NR1H3-231ENST00000529540 NUP160Q12769 1436 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms