RNA–Protein interactions for RNA: ENST00000529216.1

PABPC4-223, Transcript of poly(A) binding protein cytoplasmic 4, humanhuman

TSL 5

Gene PABPC4, Length 317 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC4-223ENST00000529216 NISCHQ9Y2I1 1504 aa19.31■□□□□ 0.68
PABPC4-223ENST00000529216 CCDC180Q9P1Z9 1646 aa17.02■□□□□ 0.31
PABPC4-223ENST00000529216 ABCC9O60706 1549 aa16.29■□□□□ 0.2
PABPC4-223ENST00000529216 ZCCHC6Q5VYS8 1495 aaKnown RBP16.19■□□□□ 0.18
PABPC4-223ENST00000529216 DCAF1Q9Y4B6 1507 aa16.04■□□□□ 0.16
PABPC4-223ENST00000529216 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
PABPC4-223ENST00000529216 NACADO15069 1562 aa15.92■□□□□ 0.14
PABPC4-223ENST00000529216 DCAF8L2P0C7V8 631 aa15.9■□□□□ 0.14
PABPC4-223ENST00000529216 RB1CC1Q8TDY2 1594 aa15.85■□□□□ 0.13
PABPC4-223ENST00000529216 SCRIBQ14160 1630 aa15.53■□□□□ 0.08
PABPC4-223ENST00000529216 AEBP2Q6ZN18 517 aaPredicted RBP15.5■□□□□ 0.07
PABPC4-223ENST00000529216 SHROOM4Q9ULL8 1493 aa15.41■□□□□ 0.06
PABPC4-223ENST00000529216 UNC13AQ9UPW8 1703 aa15.4■□□□□ 0.06
PABPC4-223ENST00000529216 BICRAQ9NZM4 1560 aa15.34■□□□□ 0.05
PABPC4-223ENST00000529216 PABPN1Q86U42 306 aaKnown RBP eCLIP15.25■□□□□ 0.03
PABPC4-223ENST00000529216 CECR2Q9BXF3 1484 aa14.98□□□□□ -0.01
PABPC4-223ENST00000529216 BAZ1AQ9NRL2 1556 aaPredicted RBP14.95□□□□□ -0.02
PABPC4-223ENST00000529216 EIF4G1Q04637 1599 aaKnown RBP14.92□□□□□ -0.02
PABPC4-223ENST00000529216 SMARCA4P51532 1647 aa14.9□□□□□ -0.02
PABPC4-223ENST00000529216 MROH2BQ7Z745 1585 aa14.88□□□□□ -0.03
PABPC4-223ENST00000529216 RSF1Q96T23 1441 aaPredicted RBP14.84□□□□□ -0.03
PABPC4-223ENST00000529216 PEG3Q9GZU2 1588 aa14.79□□□□□ -0.04
PABPC4-223ENST00000529216 SMARCA2P51531 1590 aa14.76□□□□□ -0.05
PABPC4-223ENST00000529216 ATAD2BQ9ULI0 1458 aa14.75□□□□□ -0.05
PABPC4-223ENST00000529216 CC2D2AQ9P2K1 1620 aa14.74□□□□□ -0.05
PABPC4-223ENST00000529216 CHIC1Q5VXU3 224 aa14.73□□□□□ -0.05
PABPC4-223ENST00000529216 WIZO95785 1651 aa14.7□□□□□ -0.06
PABPC4-223ENST00000529216 NCAPD3P42695 1498 aa14.69□□□□□ -0.06
PABPC4-223ENST00000529216 HMGXB3Q12766 1538 aa14.67□□□□□ -0.06
PABPC4-223ENST00000529216 SUPT5HO00267 1087 aaKnown RBP14.67□□□□□ -0.06
PABPC4-223ENST00000529216 BAZ1BQ9UIG0 1483 aaKnown RBP14.64□□□□□ -0.07
PABPC4-223ENST00000529216 TOP2AP11388 1531 aaKnown RBP14.62□□□□□ -0.07
PABPC4-223ENST00000529216 DNAJC5BQ9UF47 199 aa14.6□□□□□ -0.07
PABPC4-223ENST00000529216 CCDC88BA6NC98 1476 aa14.43□□□□□ -0.1
PABPC4-223ENST00000529216 CFTRP13569 1480 aa14.28□□□□□ -0.12
PABPC4-223ENST00000529216 CADPSQ9ULU8 1353 aa14.27□□□□□ -0.12
PABPC4-223ENST00000529216 LAMC3Q9Y6N6 1575 aa14.25□□□□□ -0.13
PABPC4-223ENST00000529216 NESP48681 1621 aa14.19□□□□□ -0.14
PABPC4-223ENST00000529216 PDS5BQ9NTI5 1447 aa14.14□□□□□ -0.15
PABPC4-223ENST00000529216 PRDM2Q13029 1718 aa14.12□□□□□ -0.15
PABPC4-223ENST00000529216 FANCD2Q9BXW9 1451 aa14.11□□□□□ -0.15
PABPC4-223ENST00000529216 CEP164Q9UPV0 1460 aa14.06□□□□□ -0.16
PABPC4-223ENST00000529216 ERCC6Q03468 1493 aa14.03□□□□□ -0.16
PABPC4-223ENST00000529216 KIF21AQ7Z4S6 1674 aa14.01□□□□□ -0.17
PABPC4-223ENST00000529216 WRNQ14191 1432 aaPredicted RBP eCLIP13.99□□□□□ -0.17
PABPC4-223ENST00000529216 ABCC8Q09428 1581 aa13.98□□□□□ -0.17
PABPC4-223ENST00000529216 MRC2Q9UBG0 1479 aa13.98□□□□□ -0.17
PABPC4-223ENST00000529216 URB2Q14146 1524 aaKnown RBP13.95□□□□□ -0.18
PABPC4-223ENST00000529216 DNMBPQ6XZF7 1577 aa13.94□□□□□ -0.18
PABPC4-223ENST00000529216 CUX1P39880 1505 aa13.94□□□□□ -0.18
PABPC4-223ENST00000529216 THOC2Q8NI27 1593 aaKnown RBP13.93□□□□□ -0.18
PABPC4-223ENST00000529216 SYNJ1O43426 1573 aa13.92□□□□□ -0.18
PABPC4-223ENST00000529216 WDR62O43379 1518 aa13.92□□□□□ -0.18
PABPC4-223ENST00000529216 TOPBP1Q92547 1522 aa13.92□□□□□ -0.18
PABPC4-223ENST00000529216 TOP2BQ02880 1626 aa13.92□□□□□ -0.18
PABPC4-223ENST00000529216 BIVM-ERCC5R4GMW8 1640 aa13.9□□□□□ -0.18
PABPC4-223ENST00000529216 TRIM41Q8WV44 630 aa13.86□□□□□ -0.19
PABPC4-223ENST00000529216 FGD5Q6ZNL6 1462 aa13.84□□□□□ -0.19
PABPC4-223ENST00000529216 POLA1P09884 1462 aaPredicted RBP13.83□□□□□ -0.2
PABPC4-223ENST00000529216 CUX2O14529 1486 aa13.78□□□□□ -0.2
PABPC4-223ENST00000529216 IFT140Q96RY7 1462 aa13.76□□□□□ -0.21
PABPC4-223ENST00000529216 SOGA1O94964 1423 aa13.76□□□□□ -0.21
PABPC4-223ENST00000529216 ABCA10Q8WWZ4 1543 aa13.74□□□□□ -0.21
PABPC4-223ENST00000529216 RAD54L2Q9Y4B4 1467 aa13.74□□□□□ -0.21
PABPC4-223ENST00000529216 TARBP1Q13395 1621 aaKnown RBP13.73□□□□□ -0.21
PABPC4-223ENST00000529216 WDR97A6NE52 1622 aa13.7□□□□□ -0.22
PABPC4-223ENST00000529216 EEA1Q15075 1411 aa13.67□□□□□ -0.22
PABPC4-223ENST00000529216 KIF27Q86VH2 1401 aa13.67□□□□□ -0.22
PABPC4-223ENST00000529216 ABCA5Q8WWZ7 1642 aa13.64□□□□□ -0.23
PABPC4-223ENST00000529216 ZNF608Q9ULD9 1512 aaPredicted RBP13.64□□□□□ -0.23
PABPC4-223ENST00000529216 TDRD9Q8NDG6 1382 aaKnown RBP13.63□□□□□ -0.23
PABPC4-223ENST00000529216 EIF4G3O43432 1585 aaKnown RBP13.62□□□□□ -0.23
PABPC4-223ENST00000529216 GAPVD1Q14C86 1478 aa13.61□□□□□ -0.23
PABPC4-223ENST00000529216 RUSC2Q8N2Y8 1516 aa13.61□□□□□ -0.23
PABPC4-223ENST00000529216 AQRO60306 1485 aaKnown RBP eCLIP13.6□□□□□ -0.232e-8■■■■■ 39.8
PABPC4-223ENST00000529216 ERICH3Q5RHP9 1530 aa13.59□□□□□ -0.23
PABPC4-223ENST00000529216 GRIN2BQ13224 1484 aa13.58□□□□□ -0.24
PABPC4-223ENST00000529216 IGF1RP08069 1367 aa13.56□□□□□ -0.24
PABPC4-223ENST00000529216 CSRNP3Q8WYN3 585 aa13.54□□□□□ -0.24
PABPC4-223ENST00000529216 PBRM1Q86U86 1689 aa13.53□□□□□ -0.24
PABPC4-223ENST00000529216 FAM9AQ8IZU1 332 aaPredicted RBP13.52□□□□□ -0.25
PABPC4-223ENST00000529216 MAGI1Q96QZ7 1491 aaPredicted RBP13.52□□□□□ -0.25
PABPC4-223ENST00000529216 CUL7Q14999 1698 aa13.51□□□□□ -0.25
PABPC4-223ENST00000529216 SNAPC4Q5SXM2 1469 aa13.51□□□□□ -0.25
PABPC4-223ENST00000529216 PRXQ9BXM0 1461 aa13.51□□□□□ -0.25
PABPC4-223ENST00000529216 ADAMTS12P58397 1594 aa13.49□□□□□ -0.25
PABPC4-223ENST00000529216 FHAD1B1AJZ9 1412 aa13.49□□□□□ -0.25
PABPC4-223ENST00000529216 CARMIL1Q5VZK9 1371 aa13.48□□□□□ -0.25
PABPC4-223ENST00000529216 KIF21BO75037 1637 aa13.47□□□□□ -0.25
PABPC4-223ENST00000529216 SYNJ2O15056 1496 aa13.46□□□□□ -0.25
PABPC4-223ENST00000529216 RAPGEF2Q9Y4G8 1499 aa13.46□□□□□ -0.25
PABPC4-223ENST00000529216 GOLGA3Q08378 1498 aa13.43□□□□□ -0.26
PABPC4-223ENST00000529216 GRIN2AQ12879 1464 aa13.41□□□□□ -0.26
PABPC4-223ENST00000529216 CHMP7Q8WUX9 453 aaPredicted RBP13.38□□□□□ -0.27
PABPC4-223ENST00000529216 NUP160Q12769 1436 aa13.35□□□□□ -0.27
PABPC4-223ENST00000529216 FBLN2P98095 1184 aa13.34□□□□□ -0.27
PABPC4-223ENST00000529216 TNIKQ9UKE5 1360 aa13.32□□□□□ -0.28
PABPC4-223ENST00000529216 CHD1O14646 1710 aa13.32□□□□□ -0.28
PABPC4-223ENST00000529216 LOC105371045A0A1W2PR82 267 aa13.31□□□□□ -0.28
PABPC4-223ENST00000529216 CEP170Q5SW79 1584 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms