RNA–Protein interactions for RNA: ENST00000528910.5

USP35-202, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 1,209 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-202ENST00000528910 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
USP35-202ENST00000528910 CCDC180Q9P1Z9 1646 aa38.15■■■■□ 3.7
USP35-202ENST00000528910 ABCC9O60706 1549 aa37.18■■■■□ 3.54
USP35-202ENST00000528910 RB1CC1Q8TDY2 1594 aa35.84■■■■□ 3.33
USP35-202ENST00000528910 NACADO15069 1562 aa35.79■■■■□ 3.32
USP35-202ENST00000528910 MYO15BQ96JP2 1530 aa35.59■■■■□ 3.29
USP35-202ENST00000528910 ZCCHC6Q5VYS8 1495 aaKnown RBP35.59■■■■□ 3.29
USP35-202ENST00000528910 DCAF1Q9Y4B6 1507 aa35.39■■■■□ 3.26
USP35-202ENST00000528910 DCAF8L2P0C7V8 631 aa35.35■■■■□ 3.25
USP35-202ENST00000528910 UNC13AQ9UPW8 1703 aa35.15■■■■□ 3.22
USP35-202ENST00000528910 BICRAQ9NZM4 1560 aa34.79■■■■□ 3.16
USP35-202ENST00000528910 SCRIBQ14160 1630 aa34.66■■■■□ 3.14
USP35-202ENST00000528910 PABPN1Q86U42 306 aaKnown RBP eCLIP34.59■■■■□ 3.13
USP35-202ENST00000528910 SHROOM4Q9ULL8 1493 aa34.48■■■■□ 3.11
USP35-202ENST00000528910 DNAJC5BQ9UF47 199 aa34.29■■■■□ 3.08
USP35-202ENST00000528910 EIF4G1Q04637 1599 aaKnown RBP33.85■■■■□ 3.01
USP35-202ENST00000528910 CC2D2AQ9P2K1 1620 aa33.73■■■□□ 2.99
USP35-202ENST00000528910 CECR2Q9BXF3 1484 aa33.44■■■□□ 2.94
USP35-202ENST00000528910 SMARCA4P51532 1647 aa33.2■■■□□ 2.9
USP35-202ENST00000528910 BAZ1AQ9NRL2 1556 aaPredicted RBP33.12■■■□□ 2.89
USP35-202ENST00000528910 NCAPD3P42695 1498 aa32.97■■■□□ 2.87
USP35-202ENST00000528910 SMARCA2P51531 1590 aa32.96■■■□□ 2.87
USP35-202ENST00000528910 ATAD2BQ9ULI0 1458 aa32.96■■■□□ 2.87
USP35-202ENST00000528910 PEG3Q9GZU2 1588 aa32.92■■■□□ 2.86
USP35-202ENST00000528910 HMGXB3Q12766 1538 aa32.89■■■□□ 2.86
USP35-202ENST00000528910 MROH2BQ7Z745 1585 aa32.87■■■□□ 2.85
USP35-202ENST00000528910 BAZ1BQ9UIG0 1483 aaKnown RBP32.67■■■□□ 2.82
USP35-202ENST00000528910 WIZO95785 1651 aa32.55■■■□□ 2.8
USP35-202ENST00000528910 RSF1Q96T23 1441 aaPredicted RBP32.42■■■□□ 2.78
USP35-202ENST00000528910 TOP2AP11388 1531 aaKnown RBP32.22■■■□□ 2.75
USP35-202ENST00000528910 LAMC3Q9Y6N6 1575 aa32.18■■■□□ 2.74
USP35-202ENST00000528910 NESP48681 1621 aa32.17■■■□□ 2.74
USP35-202ENST00000528910 ERCC6Q03468 1493 aa32.05■■■□□ 2.72
USP35-202ENST00000528910 CADPSQ9ULU8 1353 aa31.94■■■□□ 2.7
USP35-202ENST00000528910 KIF21AQ7Z4S6 1674 aa31.92■■■□□ 2.7
USP35-202ENST00000528910 THOC2Q8NI27 1593 aaKnown RBP31.86■■■□□ 2.69
USP35-202ENST00000528910 CUX2O14529 1486 aa31.85■■■□□ 2.69
USP35-202ENST00000528910 PDS5BQ9NTI5 1447 aa31.85■■■□□ 2.69
USP35-202ENST00000528910 CFTRP13569 1480 aa31.79■■■□□ 2.68
USP35-202ENST00000528910 PRDM2Q13029 1718 aa31.75■■■□□ 2.67
USP35-202ENST00000528910 CCDC88BA6NC98 1476 aa31.74■■■□□ 2.67
USP35-202ENST00000528910 FANCD2Q9BXW9 1451 aa31.61■■■□□ 2.65
USP35-202ENST00000528910 CEP164Q9UPV0 1460 aa31.6■■■□□ 2.65
USP35-202ENST00000528910 MRC2Q9UBG0 1479 aa31.59■■■□□ 2.65
USP35-202ENST00000528910 WDR62O43379 1518 aa31.56■■■□□ 2.64
USP35-202ENST00000528910 URB2Q14146 1524 aaKnown RBP31.34■■■□□ 2.61
USP35-202ENST00000528910 SUPT5HO00267 1087 aaKnown RBP31.3■■■□□ 2.6
USP35-202ENST00000528910 TOPBP1Q92547 1522 aa31.13■■■□□ 2.57
USP35-202ENST00000528910 DNMBPQ6XZF7 1577 aa31.13■■■□□ 2.57
USP35-202ENST00000528910 ABCC8Q09428 1581 aa31.11■■■□□ 2.57
USP35-202ENST00000528910 DNAJC5Q9H3Z4 198 aa31.05■■■□□ 2.56
USP35-202ENST00000528910 IFT140Q96RY7 1462 aa30.95■■■□□ 2.54
USP35-202ENST00000528910 CUX1P39880 1505 aa30.87■■■□□ 2.53
USP35-202ENST00000528910 TARBP1Q13395 1621 aaKnown RBP30.86■■■□□ 2.53
USP35-202ENST00000528910 POLA1P09884 1462 aaPredicted RBP30.85■■■□□ 2.53
USP35-202ENST00000528910 ZNF608Q9ULD9 1512 aaPredicted RBP30.78■■■□□ 2.52
USP35-202ENST00000528910 EIF4G3O43432 1585 aaKnown RBP30.77■■■□□ 2.52
USP35-202ENST00000528910 FGD5Q6ZNL6 1462 aa30.76■■■□□ 2.51
USP35-202ENST00000528910 WDR97A6NE52 1622 aa30.67■■■□□ 2.5
USP35-202ENST00000528910 BIVM-ERCC5R4GMW8 1640 aa30.66■■■□□ 2.5
USP35-202ENST00000528910 RAD54L2Q9Y4B4 1467 aa30.65■■■□□ 2.5
USP35-202ENST00000528910 SOGA1O94964 1423 aa30.63■■■□□ 2.49
USP35-202ENST00000528910 TOP2BQ02880 1626 aa30.62■■■□□ 2.49
USP35-202ENST00000528910 SYNJ1O43426 1573 aa30.58■■■□□ 2.49
USP35-202ENST00000528910 WRNQ14191 1432 aaPredicted RBP eCLIP30.57■■■□□ 2.48
USP35-202ENST00000528910 AQRO60306 1485 aaKnown RBP eCLIP30.54■■■□□ 2.486e-7■■■■■ 32.3
USP35-202ENST00000528910 ABCA10Q8WWZ4 1543 aa30.48■■■□□ 2.47
USP35-202ENST00000528910 ABCA5Q8WWZ7 1642 aa30.45■■■□□ 2.47
USP35-202ENST00000528910 TDRD9Q8NDG6 1382 aaKnown RBP30.43■■■□□ 2.46
USP35-202ENST00000528910 PBRM1Q86U86 1689 aa30.42■■■□□ 2.46
USP35-202ENST00000528910 CHD1O14646 1710 aa30.42■■■□□ 2.46
USP35-202ENST00000528910 GRIN2BQ13224 1484 aa30.35■■■□□ 2.45
USP35-202ENST00000528910 GAPVD1Q14C86 1478 aa30.33■■■□□ 2.45
USP35-202ENST00000528910 SNAPC4Q5SXM2 1469 aa30.33■■■□□ 2.45
USP35-202ENST00000528910 MAGI1Q96QZ7 1491 aaPredicted RBP30.33■■■□□ 2.45
USP35-202ENST00000528910 OSCARQ8IYS5 282 aa30.31■■■□□ 2.44
USP35-202ENST00000528910 SYNJ2O15056 1496 aa30.19■■■□□ 2.42
USP35-202ENST00000528910 ADAMTS12P58397 1594 aa30.15■■■□□ 2.42
USP35-202ENST00000528910 ERICH3Q5RHP9 1530 aa30.13■■■□□ 2.41
USP35-202ENST00000528910 CLASP1Q7Z460 1538 aa30.07■■■□□ 2.4
USP35-202ENST00000528910 FBLN2P98095 1184 aa30.05■■■□□ 2.4
USP35-202ENST00000528910 RIMBP3CA6NJZ7 1639 aa30.04■■■□□ 2.4
USP35-202ENST00000528910 RIMBP3BA6NNM3 1639 aa30.04■■■□□ 2.4
USP35-202ENST00000528910 RIMBP3Q9UFD9 1639 aa30.04■■■□□ 2.4
USP35-202ENST00000528910 ARHGEF11O15085 1522 aa30.01■■■□□ 2.39
USP35-202ENST00000528910 CHMP7Q8WUX9 453 aaPredicted RBP30■■■□□ 2.39
USP35-202ENST00000528910 GRIN2AQ12879 1464 aa29.99■■■□□ 2.39
USP35-202ENST00000528910 FHAD1B1AJZ9 1412 aa29.97■■■□□ 2.39
USP35-202ENST00000528910 KIF27Q86VH2 1401 aa29.92■■■□□ 2.38
USP35-202ENST00000528910 TRIM41Q8WV44 630 aa29.91■■■□□ 2.38
USP35-202ENST00000528910 CUL7Q14999 1698 aa29.89■■■□□ 2.38
USP35-202ENST00000528910 CEP170Q5SW79 1584 aa29.88■■■□□ 2.37
USP35-202ENST00000528910 NUP160Q12769 1436 aa29.88■■■□□ 2.37
USP35-202ENST00000528910 IGF1RP08069 1367 aa29.77■■■□□ 2.36
USP35-202ENST00000528910 ARAP1Q96P48 1450 aa29.75■■■□□ 2.35
USP35-202ENST00000528910 SHROOM2Q13796 1616 aa29.75■■■□□ 2.35
USP35-202ENST00000528910 RUSC2Q8N2Y8 1516 aa29.72■■■□□ 2.35
USP35-202ENST00000528910 CARMIL1Q5VZK9 1371 aa29.59■■■□□ 2.33
USP35-202ENST00000528910 ERCC6L2Q5T890 1561 aa29.59■■■□□ 2.33
USP35-202ENST00000528910 KIAA0586Q9BVV6 1533 aa29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms