RNA–Protein interactions for RNA: ENST00000528787.1

SSBP3-211, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-211ENST00000528787 NISCHQ9Y2I1 1504 aa18.58■□□□□ 0.56
SSBP3-211ENST00000528787 CCDC180Q9P1Z9 1646 aa16.52■□□□□ 0.24
SSBP3-211ENST00000528787 ABCC9O60706 1549 aa15.73■□□□□ 0.11
SSBP3-211ENST00000528787 ZCCHC6Q5VYS8 1495 aaKnown RBP15.52■□□□□ 0.08
SSBP3-211ENST00000528787 MYO15BQ96JP2 1530 aa15.49■□□□□ 0.07
SSBP3-211ENST00000528787 DCAF1Q9Y4B6 1507 aa15.48■□□□□ 0.07
SSBP3-211ENST00000528787 NACADO15069 1562 aa15.46■□□□□ 0.07
SSBP3-211ENST00000528787 RB1CC1Q8TDY2 1594 aa15.41■□□□□ 0.06
SSBP3-211ENST00000528787 DCAF8L2P0C7V8 631 aa15.38■□□□□ 0.05
SSBP3-211ENST00000528787 UNC13AQ9UPW8 1703 aa14.95□□□□□ -0.02
SSBP3-211ENST00000528787 SCRIBQ14160 1630 aa14.94□□□□□ -0.02
SSBP3-211ENST00000528787 SHROOM4Q9ULL8 1493 aa14.9□□□□□ -0.02
SSBP3-211ENST00000528787 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.05
SSBP3-211ENST00000528787 PABPN1Q86U42 306 aaKnown RBP eCLIP14.68□□□□□ -0.06
SSBP3-211ENST00000528787 BAZ1AQ9NRL2 1556 aaPredicted RBP14.46□□□□□ -0.09
SSBP3-211ENST00000528787 EIF4G1Q04637 1599 aaKnown RBP14.43□□□□□ -0.1
SSBP3-211ENST00000528787 SMARCA4P51532 1647 aa14.37□□□□□ -0.11
SSBP3-211ENST00000528787 CECR2Q9BXF3 1484 aa14.31□□□□□ -0.12
SSBP3-211ENST00000528787 SMARCA2P51531 1590 aa14.31□□□□□ -0.12
SSBP3-211ENST00000528787 CC2D2AQ9P2K1 1620 aa14.3□□□□□ -0.12
SSBP3-211ENST00000528787 PEG3Q9GZU2 1588 aa14.26□□□□□ -0.13
SSBP3-211ENST00000528787 MROH2BQ7Z745 1585 aa14.24□□□□□ -0.13
SSBP3-211ENST00000528787 NCAPD3P42695 1498 aa14.2□□□□□ -0.14
SSBP3-211ENST00000528787 ATAD2BQ9ULI0 1458 aa14.2□□□□□ -0.14
SSBP3-211ENST00000528787 RSF1Q96T23 1441 aaPredicted RBP14.2□□□□□ -0.14
SSBP3-211ENST00000528787 HMGXB3Q12766 1538 aa14.2□□□□□ -0.14
SSBP3-211ENST00000528787 BAZ1BQ9UIG0 1483 aaKnown RBP14.16□□□□□ -0.14
SSBP3-211ENST00000528787 WIZO95785 1651 aa14.12□□□□□ -0.15
SSBP3-211ENST00000528787 TOP2AP11388 1531 aaKnown RBP14.07□□□□□ -0.16
SSBP3-211ENST00000528787 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
SSBP3-211ENST00000528787 SUPT5HO00267 1087 aaKnown RBP14.01□□□□□ -0.17
SSBP3-211ENST00000528787 LAMC3Q9Y6N6 1575 aa13.85□□□□□ -0.19
SSBP3-211ENST00000528787 CCDC88BA6NC98 1476 aa13.83□□□□□ -0.2
SSBP3-211ENST00000528787 CADPSQ9ULU8 1353 aa13.8□□□□□ -0.2
SSBP3-211ENST00000528787 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
SSBP3-211ENST00000528787 CFTRP13569 1480 aa13.76□□□□□ -0.21
SSBP3-211ENST00000528787 PDS5BQ9NTI5 1447 aa13.76□□□□□ -0.21
SSBP3-211ENST00000528787 ERCC6Q03468 1493 aa13.67□□□□□ -0.22
SSBP3-211ENST00000528787 NESP48681 1621 aa13.63□□□□□ -0.23
SSBP3-211ENST00000528787 FANCD2Q9BXW9 1451 aa13.62□□□□□ -0.23
SSBP3-211ENST00000528787 CEP164Q9UPV0 1460 aa13.62□□□□□ -0.23
SSBP3-211ENST00000528787 ABCC8Q09428 1581 aa13.61□□□□□ -0.23
SSBP3-211ENST00000528787 KIF21AQ7Z4S6 1674 aa13.57□□□□□ -0.24
SSBP3-211ENST00000528787 MRC2Q9UBG0 1479 aa13.54□□□□□ -0.24
SSBP3-211ENST00000528787 DNMBPQ6XZF7 1577 aa13.48□□□□□ -0.25
SSBP3-211ENST00000528787 WDR62O43379 1518 aa13.48□□□□□ -0.25
SSBP3-211ENST00000528787 THOC2Q8NI27 1593 aaKnown RBP13.46□□□□□ -0.25
SSBP3-211ENST00000528787 CUX2O14529 1486 aa13.46□□□□□ -0.25
SSBP3-211ENST00000528787 WRNQ14191 1432 aaPredicted RBP eCLIP13.46□□□□□ -0.26
SSBP3-211ENST00000528787 TOPBP1Q92547 1522 aa13.42□□□□□ -0.26
SSBP3-211ENST00000528787 TOP2BQ02880 1626 aa13.41□□□□□ -0.26
SSBP3-211ENST00000528787 BIVM-ERCC5R4GMW8 1640 aa13.4□□□□□ -0.26
SSBP3-211ENST00000528787 URB2Q14146 1524 aaKnown RBP13.39□□□□□ -0.27
SSBP3-211ENST00000528787 CUX1P39880 1505 aa13.36□□□□□ -0.27
SSBP3-211ENST00000528787 IFT140Q96RY7 1462 aa13.35□□□□□ -0.27
SSBP3-211ENST00000528787 WDR97A6NE52 1622 aa13.35□□□□□ -0.27
SSBP3-211ENST00000528787 TRIM41Q8WV44 630 aa13.33□□□□□ -0.28
SSBP3-211ENST00000528787 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
SSBP3-211ENST00000528787 FGD5Q6ZNL6 1462 aa13.31□□□□□ -0.28
SSBP3-211ENST00000528787 POLA1P09884 1462 aaPredicted RBP13.3□□□□□ -0.28
SSBP3-211ENST00000528787 SOGA1O94964 1423 aa13.3□□□□□ -0.28
SSBP3-211ENST00000528787 ABCA10Q8WWZ4 1543 aa13.25□□□□□ -0.29
SSBP3-211ENST00000528787 TARBP1Q13395 1621 aaKnown RBP13.24□□□□□ -0.29
SSBP3-211ENST00000528787 CHIC1Q5VXU3 224 aa13.22□□□□□ -0.29
SSBP3-211ENST00000528787 KIF27Q86VH2 1401 aa13.21□□□□□ -0.3
SSBP3-211ENST00000528787 EEA1Q15075 1411 aa13.2□□□□□ -0.3
SSBP3-211ENST00000528787 RAD54L2Q9Y4B4 1467 aa13.17□□□□□ -0.3
SSBP3-211ENST00000528787 GAPVD1Q14C86 1478 aa13.16□□□□□ -0.3
SSBP3-211ENST00000528787 EIF4G3O43432 1585 aaKnown RBP13.15□□□□□ -0.3
SSBP3-211ENST00000528787 ABCA5Q8WWZ7 1642 aa13.15□□□□□ -0.3
SSBP3-211ENST00000528787 ERICH3Q5RHP9 1530 aa13.14□□□□□ -0.31
SSBP3-211ENST00000528787 GRIN2BQ13224 1484 aa13.14□□□□□ -0.31
SSBP3-211ENST00000528787 PBRM1Q86U86 1689 aa13.12□□□□□ -0.31
SSBP3-211ENST00000528787 MAGI1Q96QZ7 1491 aaPredicted RBP13.11□□□□□ -0.31
SSBP3-211ENST00000528787 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
SSBP3-211ENST00000528787 CUL7Q14999 1698 aa13.11□□□□□ -0.31
SSBP3-211ENST00000528787 ZNF608Q9ULD9 1512 aaPredicted RBP13.1□□□□□ -0.31
SSBP3-211ENST00000528787 AQRO60306 1485 aaKnown RBP eCLIP13.09□□□□□ -0.311e-7■■■■□ 24
SSBP3-211ENST00000528787 FHAD1B1AJZ9 1412 aa13.04□□□□□ -0.32
SSBP3-211ENST00000528787 SYNJ2O15056 1496 aa13.03□□□□□ -0.32
SSBP3-211ENST00000528787 CSRNP3Q8WYN3 585 aa13.02□□□□□ -0.33
SSBP3-211ENST00000528787 SNAPC4Q5SXM2 1469 aa13.02□□□□□ -0.33
SSBP3-211ENST00000528787 CHMP7Q8WUX9 453 aaPredicted RBP13.01□□□□□ -0.33
SSBP3-211ENST00000528787 IGF1RP08069 1367 aa13.01□□□□□ -0.33
SSBP3-211ENST00000528787 ADAMTS12P58397 1594 aa13.01□□□□□ -0.33
SSBP3-211ENST00000528787 CARMIL1Q5VZK9 1371 aa12.99□□□□□ -0.33
SSBP3-211ENST00000528787 RAPGEF2Q9Y4G8 1499 aa12.97□□□□□ -0.33
SSBP3-211ENST00000528787 KIF21BO75037 1637 aa12.95□□□□□ -0.34
SSBP3-211ENST00000528787 FBLN2P98095 1184 aa12.95□□□□□ -0.34
SSBP3-211ENST00000528787 CHD1O14646 1710 aa12.95□□□□□ -0.34
SSBP3-211ENST00000528787 GRIN2AQ12879 1464 aa12.94□□□□□ -0.34
SSBP3-211ENST00000528787 RUSC2Q8N2Y8 1516 aa12.93□□□□□ -0.34
SSBP3-211ENST00000528787 PRXQ9BXM0 1461 aa12.93□□□□□ -0.34
SSBP3-211ENST00000528787 OSCARQ8IYS5 282 aa12.93□□□□□ -0.34
SSBP3-211ENST00000528787 FAM9AQ8IZU1 332 aaPredicted RBP12.9□□□□□ -0.34
SSBP3-211ENST00000528787 GOLGA3Q08378 1498 aa12.9□□□□□ -0.34
SSBP3-211ENST00000528787 CTTNBP2Q8WZ74 1663 aa12.86□□□□□ -0.35
SSBP3-211ENST00000528787 NUP160Q12769 1436 aa12.86□□□□□ -0.35
SSBP3-211ENST00000528787 KIAA0586Q9BVV6 1533 aa12.85□□□□□ -0.35
SSBP3-211ENST00000528787 UBTFP17480 764 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms