RNA–Protein interactions for RNA: ENST00000528730.1

PDZD3-209, Transcript of PDZ domain containing 3, humanhuman

TSL 3

Gene PDZD3, Length 584 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZD3-209ENST00000528730 NISCHQ9Y2I1 1504 aa31.72■■■□□ 2.67
PDZD3-209ENST00000528730 CCDC180Q9P1Z9 1646 aa28.29■■■□□ 2.12
PDZD3-209ENST00000528730 ABCC9O60706 1549 aa27.87■■■□□ 2.05
PDZD3-209ENST00000528730 DCAF8L2P0C7V8 631 aa26.77■■□□□ 1.88
PDZD3-209ENST00000528730 RB1CC1Q8TDY2 1594 aa26.71■■□□□ 1.87
PDZD3-209ENST00000528730 NACADO15069 1562 aa26.6■■□□□ 1.85
PDZD3-209ENST00000528730 ZCCHC6Q5VYS8 1495 aaKnown RBP26.38■■□□□ 1.81
PDZD3-209ENST00000528730 MYO15BQ96JP2 1530 aa26.3■■□□□ 1.8
PDZD3-209ENST00000528730 DCAF1Q9Y4B6 1507 aa26.16■■□□□ 1.78
PDZD3-209ENST00000528730 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
PDZD3-209ENST00000528730 PABPN1Q86U42 306 aaKnown RBP eCLIP26.01■■□□□ 1.75
PDZD3-209ENST00000528730 SCRIBQ14160 1630 aa25.9■■□□□ 1.74
PDZD3-209ENST00000528730 BICRAQ9NZM4 1560 aa25.82■■□□□ 1.72
PDZD3-209ENST00000528730 DNAJC5BQ9UF47 199 aa25.55■■□□□ 1.68
PDZD3-209ENST00000528730 SHROOM4Q9ULL8 1493 aa25.52■■□□□ 1.68
PDZD3-209ENST00000528730 EIF4G1Q04637 1599 aaKnown RBP25.21■■□□□ 1.63
PDZD3-209ENST00000528730 CC2D2AQ9P2K1 1620 aa25.16■■□□□ 1.62
PDZD3-209ENST00000528730 CECR2Q9BXF3 1484 aa25.02■■□□□ 1.6
PDZD3-209ENST00000528730 SMARCA4P51532 1647 aa24.68■■□□□ 1.54
PDZD3-209ENST00000528730 BAZ1AQ9NRL2 1556 aaPredicted RBP24.63■■□□□ 1.53
PDZD3-209ENST00000528730 SMARCA2P51531 1590 aa24.54■■□□□ 1.52
PDZD3-209ENST00000528730 ATAD2BQ9ULI0 1458 aa24.53■■□□□ 1.52
PDZD3-209ENST00000528730 NCAPD3P42695 1498 aa24.49■■□□□ 1.51
PDZD3-209ENST00000528730 MROH2BQ7Z745 1585 aa24.46■■□□□ 1.51
PDZD3-209ENST00000528730 HMGXB3Q12766 1538 aa24.41■■□□□ 1.5
PDZD3-209ENST00000528730 BAZ1BQ9UIG0 1483 aaKnown RBP24.4■■□□□ 1.5
PDZD3-209ENST00000528730 PEG3Q9GZU2 1588 aa24.34■■□□□ 1.49
PDZD3-209ENST00000528730 WIZO95785 1651 aa24.24■■□□□ 1.47
PDZD3-209ENST00000528730 RSF1Q96T23 1441 aaPredicted RBP24.1■■□□□ 1.45
PDZD3-209ENST00000528730 ERCC6Q03468 1493 aa24.08■■□□□ 1.45
PDZD3-209ENST00000528730 NESP48681 1621 aa24.04■■□□□ 1.44
PDZD3-209ENST00000528730 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.42
PDZD3-209ENST00000528730 TOP2AP11388 1531 aaKnown RBP23.94■■□□□ 1.42
PDZD3-209ENST00000528730 CADPSQ9ULU8 1353 aa23.81■■□□□ 1.4
PDZD3-209ENST00000528730 KIF21AQ7Z4S6 1674 aa23.8■■□□□ 1.4
PDZD3-209ENST00000528730 PDS5BQ9NTI5 1447 aa23.8■■□□□ 1.4
PDZD3-209ENST00000528730 CUX2O14529 1486 aa23.75■■□□□ 1.39
PDZD3-209ENST00000528730 THOC2Q8NI27 1593 aaKnown RBP23.68■■□□□ 1.38
PDZD3-209ENST00000528730 CCDC88BA6NC98 1476 aa23.65■■□□□ 1.38
PDZD3-209ENST00000528730 CFTRP13569 1480 aa23.63■■□□□ 1.37
PDZD3-209ENST00000528730 CEP164Q9UPV0 1460 aa23.61■■□□□ 1.37
PDZD3-209ENST00000528730 SUPT5HO00267 1087 aaKnown RBP23.6■■□□□ 1.37
PDZD3-209ENST00000528730 FANCD2Q9BXW9 1451 aa23.6■■□□□ 1.37
PDZD3-209ENST00000528730 MRC2Q9UBG0 1479 aa23.57■■□□□ 1.36
PDZD3-209ENST00000528730 PRDM2Q13029 1718 aa23.56■■□□□ 1.36
PDZD3-209ENST00000528730 WDR62O43379 1518 aa23.46■■□□□ 1.35
PDZD3-209ENST00000528730 URB2Q14146 1524 aaKnown RBP23.33■■□□□ 1.33
PDZD3-209ENST00000528730 TOPBP1Q92547 1522 aa23.19■■□□□ 1.3
PDZD3-209ENST00000528730 ABCC8Q09428 1581 aa23.18■■□□□ 1.3
PDZD3-209ENST00000528730 DNMBPQ6XZF7 1577 aa23.18■■□□□ 1.3
PDZD3-209ENST00000528730 DNAJC5Q9H3Z4 198 aa23.12■■□□□ 1.29
PDZD3-209ENST00000528730 IFT140Q96RY7 1462 aa23.07■■□□□ 1.28
PDZD3-209ENST00000528730 ZNF608Q9ULD9 1512 aaPredicted RBP22.98■■□□□ 1.27
PDZD3-209ENST00000528730 POLA1P09884 1462 aaPredicted RBP22.98■■□□□ 1.27
PDZD3-209ENST00000528730 CUX1P39880 1505 aa22.97■■□□□ 1.27
PDZD3-209ENST00000528730 FGD5Q6ZNL6 1462 aa22.94■■□□□ 1.26
PDZD3-209ENST00000528730 EIF4G3O43432 1585 aaKnown RBP22.93■■□□□ 1.26
PDZD3-209ENST00000528730 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
PDZD3-209ENST00000528730 RAD54L2Q9Y4B4 1467 aa22.91■■□□□ 1.26
PDZD3-209ENST00000528730 SOGA1O94964 1423 aa22.91■■□□□ 1.26
PDZD3-209ENST00000528730 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.25
PDZD3-209ENST00000528730 WRNQ14191 1432 aaPredicted RBP eCLIP22.81■■□□□ 1.24
PDZD3-209ENST00000528730 TDRD9Q8NDG6 1382 aaKnown RBP22.8■■□□□ 1.24
PDZD3-209ENST00000528730 OSCARQ8IYS5 282 aa22.78■■□□□ 1.24
PDZD3-209ENST00000528730 SYNJ1O43426 1573 aa22.75■■□□□ 1.23
PDZD3-209ENST00000528730 BIVM-ERCC5R4GMW8 1640 aa22.75■■□□□ 1.23
PDZD3-209ENST00000528730 FBLN2P98095 1184 aa22.74■■□□□ 1.23
PDZD3-209ENST00000528730 TOP2BQ02880 1626 aa22.74■■□□□ 1.23
PDZD3-209ENST00000528730 WDR97A6NE52 1622 aa22.73■■□□□ 1.23
PDZD3-209ENST00000528730 CHD1O14646 1710 aa22.71■■□□□ 1.23
PDZD3-209ENST00000528730 PBRM1Q86U86 1689 aa22.66■■□□□ 1.22
PDZD3-209ENST00000528730 ABCA10Q8WWZ4 1543 aa22.66■■□□□ 1.22
PDZD3-209ENST00000528730 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
PDZD3-209ENST00000528730 GRIN2BQ13224 1484 aa22.65■■□□□ 1.22
PDZD3-209ENST00000528730 GAPVD1Q14C86 1478 aa22.65■■□□□ 1.22
PDZD3-209ENST00000528730 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
PDZD3-209ENST00000528730 MAGI1Q96QZ7 1491 aaPredicted RBP22.59■■□□□ 1.21
PDZD3-209ENST00000528730 CHMP7Q8WUX9 453 aaPredicted RBP22.58■■□□□ 1.21
PDZD3-209ENST00000528730 TRIM41Q8WV44 630 aa22.51■■□□□ 1.19
PDZD3-209ENST00000528730 SYNJ2O15056 1496 aa22.51■■□□□ 1.19
PDZD3-209ENST00000528730 RIMBP3CA6NJZ7 1639 aa22.44■■□□□ 1.18
PDZD3-209ENST00000528730 RIMBP3BA6NNM3 1639 aa22.44■■□□□ 1.18
PDZD3-209ENST00000528730 RIMBP3Q9UFD9 1639 aa22.44■■□□□ 1.18
PDZD3-209ENST00000528730 ADAMTS12P58397 1594 aa22.42■■□□□ 1.18
PDZD3-209ENST00000528730 ARHGEF11O15085 1522 aa22.41■■□□□ 1.18
PDZD3-209ENST00000528730 ERICH3Q5RHP9 1530 aa22.4■■□□□ 1.18
PDZD3-209ENST00000528730 FHAD1B1AJZ9 1412 aa22.36■■□□□ 1.17
PDZD3-209ENST00000528730 GRIN2AQ12879 1464 aa22.35■■□□□ 1.17
PDZD3-209ENST00000528730 KIF27Q86VH2 1401 aa22.35■■□□□ 1.17
PDZD3-209ENST00000528730 CLASP1Q7Z460 1538 aa22.35■■□□□ 1.17
PDZD3-209ENST00000528730 CYB5RLQ6IPT4 315 aa22.26■■□□□ 1.15
PDZD3-209ENST00000528730 CEP170Q5SW79 1584 aa22.25■■□□□ 1.15
PDZD3-209ENST00000528730 CUL7Q14999 1698 aa22.23■■□□□ 1.15
PDZD3-209ENST00000528730 NUP160Q12769 1436 aa22.2■■□□□ 1.14
PDZD3-209ENST00000528730 ARAP1Q96P48 1450 aa22.2■■□□□ 1.14
PDZD3-209ENST00000528730 IGF1RP08069 1367 aa22.18■■□□□ 1.14
PDZD3-209ENST00000528730 CARMIL1Q5VZK9 1371 aa22.12■■□□□ 1.13
PDZD3-209ENST00000528730 RUSC2Q8N2Y8 1516 aa22.1■■□□□ 1.13
PDZD3-209ENST00000528730 SHROOM2Q13796 1616 aa22.06■■□□□ 1.12
PDZD3-209ENST00000528730 ERCC6L2Q5T890 1561 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms