RNA–Protein interactions for RNA: ENST00000528699.1

SIPA1-204, Transcript of signal-induced proliferation-associated 1, humanhuman

TSL 2

Gene SIPA1, Length 548 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIPA1-204ENST00000528699 NISCHQ9Y2I1 1504 aa26.87■■□□□ 1.89
SIPA1-204ENST00000528699 CCDC180Q9P1Z9 1646 aa24.07■■□□□ 1.44
SIPA1-204ENST00000528699 ABCC9O60706 1549 aa23.8■■□□□ 1.4
SIPA1-204ENST00000528699 RB1CC1Q8TDY2 1594 aa22.78■■□□□ 1.24
SIPA1-204ENST00000528699 NACADO15069 1562 aa22.68■■□□□ 1.22
SIPA1-204ENST00000528699 MYO15BQ96JP2 1530 aa22.47■■□□□ 1.19
SIPA1-204ENST00000528699 DCAF8L2P0C7V8 631 aa22.44■■□□□ 1.18
SIPA1-204ENST00000528699 ZCCHC6Q5VYS8 1495 aaKnown RBP22.34■■□□□ 1.17
SIPA1-204ENST00000528699 UNC13AQ9UPW8 1703 aa22.28■■□□□ 1.16
SIPA1-204ENST00000528699 DCAF1Q9Y4B6 1507 aa22.25■■□□□ 1.15
SIPA1-204ENST00000528699 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
SIPA1-204ENST00000528699 BICRAQ9NZM4 1560 aa22.14■■□□□ 1.13
SIPA1-204ENST00000528699 DNAJC5BQ9UF47 199 aa22.14■■□□□ 1.13
SIPA1-204ENST00000528699 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
SIPA1-204ENST00000528699 SCRIBQ14160 1630 aa21.89■■□□□ 1.09
SIPA1-204ENST00000528699 EIF4G1Q04637 1599 aaKnown RBP21.57■■□□□ 1.04
SIPA1-204ENST00000528699 CC2D2AQ9P2K1 1620 aa21.55■■□□□ 1.04
SIPA1-204ENST00000528699 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.02
SIPA1-204ENST00000528699 NCAPD3P42695 1498 aa20.94■□□□□ 0.94
SIPA1-204ENST00000528699 SMARCA4P51532 1647 aa20.93■□□□□ 0.94
SIPA1-204ENST00000528699 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.94
SIPA1-204ENST00000528699 BAZ1AQ9NRL2 1556 aaPredicted RBP20.85■□□□□ 0.93
SIPA1-204ENST00000528699 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
SIPA1-204ENST00000528699 HMGXB3Q12766 1538 aa20.83■□□□□ 0.92
SIPA1-204ENST00000528699 PEG3Q9GZU2 1588 aa20.76■□□□□ 0.91
SIPA1-204ENST00000528699 MROH2BQ7Z745 1585 aa20.7■□□□□ 0.9
SIPA1-204ENST00000528699 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
SIPA1-204ENST00000528699 ERCC6Q03468 1493 aa20.53■□□□□ 0.88
SIPA1-204ENST00000528699 NESP48681 1621 aa20.53■□□□□ 0.88
SIPA1-204ENST00000528699 CUX2O14529 1486 aa20.48■□□□□ 0.87
SIPA1-204ENST00000528699 WIZO95785 1651 aa20.45■□□□□ 0.86
SIPA1-204ENST00000528699 LAMC3Q9Y6N6 1575 aa20.43■□□□□ 0.86
SIPA1-204ENST00000528699 RSF1Q96T23 1441 aaPredicted RBP20.34■□□□□ 0.85
SIPA1-204ENST00000528699 THOC2Q8NI27 1593 aaKnown RBP20.33■□□□□ 0.84
SIPA1-204ENST00000528699 KIF21AQ7Z4S6 1674 aa20.29■□□□□ 0.84
SIPA1-204ENST00000528699 CADPSQ9ULU8 1353 aa20.28■□□□□ 0.84
SIPA1-204ENST00000528699 PDS5BQ9NTI5 1447 aa20.27■□□□□ 0.84
SIPA1-204ENST00000528699 TOP2AP11388 1531 aaKnown RBP20.24■□□□□ 0.83
SIPA1-204ENST00000528699 DNAJC5Q9H3Z4 198 aa20.19■□□□□ 0.82
SIPA1-204ENST00000528699 CFTRP13569 1480 aa20.12■□□□□ 0.81
SIPA1-204ENST00000528699 MRC2Q9UBG0 1479 aa20.11■□□□□ 0.81
SIPA1-204ENST00000528699 WDR62O43379 1518 aa20.09■□□□□ 0.81
SIPA1-204ENST00000528699 FANCD2Q9BXW9 1451 aa20.05■□□□□ 0.8
SIPA1-204ENST00000528699 CEP164Q9UPV0 1460 aa20.05■□□□□ 0.8
SIPA1-204ENST00000528699 CCDC88BA6NC98 1476 aa19.97■□□□□ 0.79
SIPA1-204ENST00000528699 PRDM2Q13029 1718 aa19.95■□□□□ 0.78
SIPA1-204ENST00000528699 URB2Q14146 1524 aaKnown RBP19.9■□□□□ 0.78
SIPA1-204ENST00000528699 TOPBP1Q92547 1522 aa19.71■□□□□ 0.75
SIPA1-204ENST00000528699 DNMBPQ6XZF7 1577 aa19.67■□□□□ 0.74
SIPA1-204ENST00000528699 IFT140Q96RY7 1462 aa19.67■□□□□ 0.74
SIPA1-204ENST00000528699 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
SIPA1-204ENST00000528699 ZNF608Q9ULD9 1512 aaPredicted RBP19.61■□□□□ 0.73
SIPA1-204ENST00000528699 TARBP1Q13395 1621 aaKnown RBP19.54■□□□□ 0.72
SIPA1-204ENST00000528699 EIF4G3O43432 1585 aaKnown RBP19.54■□□□□ 0.72
SIPA1-204ENST00000528699 POLA1P09884 1462 aaPredicted RBP19.53■□□□□ 0.72
SIPA1-204ENST00000528699 OSCARQ8IYS5 282 aa19.49■□□□□ 0.71
SIPA1-204ENST00000528699 SUPT5HO00267 1087 aaKnown RBP19.46■□□□□ 0.71
SIPA1-204ENST00000528699 CUX1P39880 1505 aa19.44■□□□□ 0.7
SIPA1-204ENST00000528699 AQRO60306 1485 aaKnown RBP eCLIP19.43■□□□□ 0.7
SIPA1-204ENST00000528699 FGD5Q6ZNL6 1462 aa19.42■□□□□ 0.7
SIPA1-204ENST00000528699 RAD54L2Q9Y4B4 1467 aa19.42■□□□□ 0.7
SIPA1-204ENST00000528699 SOGA1O94964 1423 aa19.39■□□□□ 0.69
SIPA1-204ENST00000528699 WDR97A6NE52 1622 aa19.38■□□□□ 0.69
SIPA1-204ENST00000528699 CHD1O14646 1710 aa19.34■□□□□ 0.69
SIPA1-204ENST00000528699 TRIM41Q8WV44 630 aa19.33■□□□□ 0.68
SIPA1-204ENST00000528699 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
SIPA1-204ENST00000528699 RIMBP3CA6NJZ7 1639 aa19.29■□□□□ 0.68
SIPA1-204ENST00000528699 RIMBP3BA6NNM3 1639 aa19.29■□□□□ 0.68
SIPA1-204ENST00000528699 RIMBP3Q9UFD9 1639 aa19.29■□□□□ 0.68
SIPA1-204ENST00000528699 SNAPC4Q5SXM2 1469 aa19.26■□□□□ 0.67
SIPA1-204ENST00000528699 ARHGEF11O15085 1522 aa19.25■□□□□ 0.67
SIPA1-204ENST00000528699 GRIN2BQ13224 1484 aa19.23■□□□□ 0.67
SIPA1-204ENST00000528699 MAGI1Q96QZ7 1491 aaPredicted RBP19.23■□□□□ 0.67
SIPA1-204ENST00000528699 ABCA10Q8WWZ4 1543 aa19.22■□□□□ 0.67
SIPA1-204ENST00000528699 ABCA5Q8WWZ7 1642 aa19.21■□□□□ 0.67
SIPA1-204ENST00000528699 BIVM-ERCC5R4GMW8 1640 aa19.21■□□□□ 0.67
SIPA1-204ENST00000528699 TOP2BQ02880 1626 aa19.2■□□□□ 0.66
SIPA1-204ENST00000528699 PBRM1Q86U86 1689 aa19.19■□□□□ 0.66
SIPA1-204ENST00000528699 GAPVD1Q14C86 1478 aa19.18■□□□□ 0.66
SIPA1-204ENST00000528699 FBLN2P98095 1184 aa19.18■□□□□ 0.66
SIPA1-204ENST00000528699 SYNJ1O43426 1573 aa19.18■□□□□ 0.66
SIPA1-204ENST00000528699 WRNQ14191 1432 aaPredicted RBP eCLIP19.17■□□□□ 0.66
SIPA1-204ENST00000528699 SYNJ2O15056 1496 aa19.16■□□□□ 0.66
SIPA1-204ENST00000528699 CLASP1Q7Z460 1538 aa19.15■□□□□ 0.66
SIPA1-204ENST00000528699 CHMP7Q8WUX9 453 aaPredicted RBP19.1■□□□□ 0.65
SIPA1-204ENST00000528699 ARAP1Q96P48 1450 aa19.08■□□□□ 0.64
SIPA1-204ENST00000528699 ADAMTS12P58397 1594 aa19.04■□□□□ 0.64
SIPA1-204ENST00000528699 CYB5RLQ6IPT4 315 aa19■□□□□ 0.63
SIPA1-204ENST00000528699 GRIN2AQ12879 1464 aa19■□□□□ 0.63
SIPA1-204ENST00000528699 ERICH3Q5RHP9 1530 aa18.99■□□□□ 0.63
SIPA1-204ENST00000528699 FHAD1B1AJZ9 1412 aa18.95■□□□□ 0.62
SIPA1-204ENST00000528699 NUP160Q12769 1436 aa18.94■□□□□ 0.62
SIPA1-204ENST00000528699 CEP170Q5SW79 1584 aa18.93■□□□□ 0.62
SIPA1-204ENST00000528699 SHROOM2Q13796 1616 aa18.85■□□□□ 0.61
SIPA1-204ENST00000528699 ERCC6L2Q5T890 1561 aa18.84■□□□□ 0.61
SIPA1-204ENST00000528699 KIF27Q86VH2 1401 aa18.78■□□□□ 0.6
SIPA1-204ENST00000528699 RUSC2Q8N2Y8 1516 aa18.78■□□□□ 0.6
SIPA1-204ENST00000528699 CUL7Q14999 1698 aa18.76■□□□□ 0.59
SIPA1-204ENST00000528699 IGF1RP08069 1367 aa18.75■□□□□ 0.59
SIPA1-204ENST00000528699 TRHP20396 242 aaPredicted RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms