RNA–Protein interactions for RNA: ENST00000528563.5

HIF3A-211, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2

Gene HIF3A, Length 1,486 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-211ENST00000528563 NISCHQ9Y2I1 1504 aa41.01■■■■■ 4.15
HIF3A-211ENST00000528563 CCDC180Q9P1Z9 1646 aa36.41■■■■□ 3.42
HIF3A-211ENST00000528563 ABCC9O60706 1549 aa35.76■■■■□ 3.32
HIF3A-211ENST00000528563 DCAF8L2P0C7V8 631 aa34.34■■■■□ 3.09
HIF3A-211ENST00000528563 RB1CC1Q8TDY2 1594 aa34.34■■■■□ 3.09
HIF3A-211ENST00000528563 NACADO15069 1562 aa34.3■■■■□ 3.08
HIF3A-211ENST00000528563 ZCCHC6Q5VYS8 1495 aaKnown RBP34.11■■■■□ 3.05
HIF3A-211ENST00000528563 MYO15BQ96JP2 1530 aa34.1■■■■□ 3.05
HIF3A-211ENST00000528563 DCAF1Q9Y4B6 1507 aa33.92■■■■□ 3.02
HIF3A-211ENST00000528563 UNC13AQ9UPW8 1703 aa33.52■■■□□ 2.96
HIF3A-211ENST00000528563 PABPN1Q86U42 306 aaKnown RBP eCLIP33.46■■■□□ 2.95
HIF3A-211ENST00000528563 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
HIF3A-211ENST00000528563 SCRIBQ14160 1630 aa33.21■■■□□ 2.91
HIF3A-211ENST00000528563 DNAJC5BQ9UF47 199 aa33.01■■■□□ 2.88
HIF3A-211ENST00000528563 SHROOM4Q9ULL8 1493 aa32.94■■■□□ 2.86
HIF3A-211ENST00000528563 EIF4G1Q04637 1599 aaKnown RBP32.43■■■□□ 2.78
HIF3A-211ENST00000528563 CC2D2AQ9P2K1 1620 aa32.32■■■□□ 2.77
HIF3A-211ENST00000528563 CECR2Q9BXF3 1484 aa32.14■■■□□ 2.74
HIF3A-211ENST00000528563 SMARCA4P51532 1647 aa31.79■■■□□ 2.68
HIF3A-211ENST00000528563 BAZ1AQ9NRL2 1556 aaPredicted RBP31.75■■■□□ 2.67
HIF3A-211ENST00000528563 NCAPD3P42695 1498 aa31.71■■■□□ 2.67
HIF3A-211ENST00000528563 ATAD2BQ9ULI0 1458 aa31.69■■■□□ 2.66
HIF3A-211ENST00000528563 SMARCA2P51531 1590 aa31.6■■■□□ 2.65
HIF3A-211ENST00000528563 MROH2BQ7Z745 1585 aa31.6■■■□□ 2.65
HIF3A-211ENST00000528563 PEG3Q9GZU2 1588 aa31.51■■■□□ 2.63
HIF3A-211ENST00000528563 HMGXB3Q12766 1538 aa31.47■■■□□ 2.63
HIF3A-211ENST00000528563 BAZ1BQ9UIG0 1483 aaKnown RBP31.38■■■□□ 2.61
HIF3A-211ENST00000528563 RSF1Q96T23 1441 aaPredicted RBP31.25■■■□□ 2.59
HIF3A-211ENST00000528563 WIZO95785 1651 aa31.22■■■□□ 2.59
HIF3A-211ENST00000528563 NESP48681 1621 aa30.93■■■□□ 2.54
HIF3A-211ENST00000528563 TOP2AP11388 1531 aaKnown RBP30.87■■■□□ 2.53
HIF3A-211ENST00000528563 LAMC3Q9Y6N6 1575 aa30.81■■■□□ 2.52
HIF3A-211ENST00000528563 ERCC6Q03468 1493 aa30.79■■■□□ 2.52
HIF3A-211ENST00000528563 CADPSQ9ULU8 1353 aa30.78■■■□□ 2.52
HIF3A-211ENST00000528563 PDS5BQ9NTI5 1447 aa30.64■■■□□ 2.5
HIF3A-211ENST00000528563 CCDC88BA6NC98 1476 aa30.58■■■□□ 2.49
HIF3A-211ENST00000528563 CFTRP13569 1480 aa30.57■■■□□ 2.48
HIF3A-211ENST00000528563 CUX2O14529 1486 aa30.51■■■□□ 2.47
HIF3A-211ENST00000528563 KIF21AQ7Z4S6 1674 aa30.49■■■□□ 2.47
HIF3A-211ENST00000528563 THOC2Q8NI27 1593 aaKnown RBP30.42■■■□□ 2.46
HIF3A-211ENST00000528563 SUPT5HO00267 1087 aaKnown RBP30.41■■■□□ 2.46
HIF3A-211ENST00000528563 FANCD2Q9BXW9 1451 aa30.38■■■□□ 2.45
HIF3A-211ENST00000528563 CEP164Q9UPV0 1460 aa30.31■■■□□ 2.44
HIF3A-211ENST00000528563 MRC2Q9UBG0 1479 aa30.3■■■□□ 2.44
HIF3A-211ENST00000528563 PRDM2Q13029 1718 aa30.19■■■□□ 2.42
HIF3A-211ENST00000528563 WDR62O43379 1518 aa30.19■■■□□ 2.42
HIF3A-211ENST00000528563 URB2Q14146 1524 aaKnown RBP30.09■■■□□ 2.41
HIF3A-211ENST00000528563 TOPBP1Q92547 1522 aa29.89■■■□□ 2.38
HIF3A-211ENST00000528563 ABCC8Q09428 1581 aa29.89■■■□□ 2.37
HIF3A-211ENST00000528563 DNMBPQ6XZF7 1577 aa29.82■■■□□ 2.36
HIF3A-211ENST00000528563 DNAJC5Q9H3Z4 198 aa29.78■■■□□ 2.36
HIF3A-211ENST00000528563 IFT140Q96RY7 1462 aa29.72■■■□□ 2.35
HIF3A-211ENST00000528563 CUX1P39880 1505 aa29.64■■■□□ 2.34
HIF3A-211ENST00000528563 POLA1P09884 1462 aaPredicted RBP29.63■■■□□ 2.33
HIF3A-211ENST00000528563 ZNF608Q9ULD9 1512 aaPredicted RBP29.6■■■□□ 2.33
HIF3A-211ENST00000528563 TARBP1Q13395 1621 aaKnown RBP29.56■■■□□ 2.32
HIF3A-211ENST00000528563 SOGA1O94964 1423 aa29.55■■■□□ 2.32
HIF3A-211ENST00000528563 FGD5Q6ZNL6 1462 aa29.54■■■□□ 2.32
HIF3A-211ENST00000528563 RAD54L2Q9Y4B4 1467 aa29.52■■■□□ 2.32
HIF3A-211ENST00000528563 AQRO60306 1485 aaKnown RBP eCLIP29.45■■■□□ 2.3
HIF3A-211ENST00000528563 WRNQ14191 1432 aaPredicted RBP eCLIP29.43■■■□□ 2.3
HIF3A-211ENST00000528563 EIF4G3O43432 1585 aaKnown RBP29.41■■■□□ 2.3
HIF3A-211ENST00000528563 TDRD9Q8NDG6 1382 aaKnown RBP29.4■■■□□ 2.3
HIF3A-211ENST00000528563 TOP2BQ02880 1626 aa29.35■■■□□ 2.29
HIF3A-211ENST00000528563 OSCARQ8IYS5 282 aa29.33■■■□□ 2.29
HIF3A-211ENST00000528563 SYNJ1O43426 1573 aa29.33■■■□□ 2.29
HIF3A-211ENST00000528563 BIVM-ERCC5R4GMW8 1640 aa29.32■■■□□ 2.28
HIF3A-211ENST00000528563 WDR97A6NE52 1622 aa29.28■■■□□ 2.28
HIF3A-211ENST00000528563 ABCA10Q8WWZ4 1543 aa29.27■■■□□ 2.28
HIF3A-211ENST00000528563 GRIN2BQ13224 1484 aa29.18■■■□□ 2.26
HIF3A-211ENST00000528563 GAPVD1Q14C86 1478 aa29.17■■■□□ 2.26
HIF3A-211ENST00000528563 FBLN2P98095 1184 aa29.11■■■□□ 2.25
HIF3A-211ENST00000528563 SNAPC4Q5SXM2 1469 aa29.11■■■□□ 2.25
HIF3A-211ENST00000528563 ABCA5Q8WWZ7 1642 aa29.11■■■□□ 2.25
HIF3A-211ENST00000528563 MAGI1Q96QZ7 1491 aaPredicted RBP29.1■■■□□ 2.25
HIF3A-211ENST00000528563 CHD1O14646 1710 aa29.04■■■□□ 2.24
HIF3A-211ENST00000528563 CHMP7Q8WUX9 453 aaPredicted RBP29.04■■■□□ 2.24
HIF3A-211ENST00000528563 PBRM1Q86U86 1689 aa29.02■■■□□ 2.24
HIF3A-211ENST00000528563 SYNJ2O15056 1496 aa28.99■■■□□ 2.23
HIF3A-211ENST00000528563 ERICH3Q5RHP9 1530 aa28.9■■■□□ 2.22
HIF3A-211ENST00000528563 FHAD1B1AJZ9 1412 aa28.84■■■□□ 2.21
HIF3A-211ENST00000528563 KIF27Q86VH2 1401 aa28.82■■■□□ 2.2
HIF3A-211ENST00000528563 ADAMTS12P58397 1594 aa28.82■■■□□ 2.2
HIF3A-211ENST00000528563 GRIN2AQ12879 1464 aa28.79■■■□□ 2.2
HIF3A-211ENST00000528563 IGF1RP08069 1367 aa28.78■■■□□ 2.2
HIF3A-211ENST00000528563 CLASP1Q7Z460 1538 aa28.78■■■□□ 2.2
HIF3A-211ENST00000528563 ARHGEF11O15085 1522 aa28.76■■■□□ 2.2
HIF3A-211ENST00000528563 RIMBP3CA6NJZ7 1639 aa28.76■■■□□ 2.19
HIF3A-211ENST00000528563 RIMBP3BA6NNM3 1639 aa28.76■■■□□ 2.19
HIF3A-211ENST00000528563 RIMBP3Q9UFD9 1639 aa28.76■■■□□ 2.19
HIF3A-211ENST00000528563 TRIM41Q8WV44 630 aa28.73■■■□□ 2.19
HIF3A-211ENST00000528563 NUP160Q12769 1436 aa28.69■■■□□ 2.18
HIF3A-211ENST00000528563 CEP170Q5SW79 1584 aa28.63■■■□□ 2.17
HIF3A-211ENST00000528563 CYB5RLQ6IPT4 315 aa28.58■■■□□ 2.17
HIF3A-211ENST00000528563 CARMIL1Q5VZK9 1371 aa28.57■■■□□ 2.16
HIF3A-211ENST00000528563 CUL7Q14999 1698 aa28.57■■■□□ 2.16
HIF3A-211ENST00000528563 RUSC2Q8N2Y8 1516 aa28.57■■■□□ 2.16
HIF3A-211ENST00000528563 ARAP1Q96P48 1450 aa28.54■■■□□ 2.16
HIF3A-211ENST00000528563 JPH4Q96JJ6 628 aa28.46■■■□□ 2.15
HIF3A-211ENST00000528563 SHROOM2Q13796 1616 aa28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms