RNA–Protein interactions for RNA: ENST00000528441.1

CMTM1-210, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 979 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-210ENST00000528441 NISCHQ9Y2I1 1504 aa21.96■■□□□ 1.11
CMTM1-210ENST00000528441 AEBP2Q6ZN18 517 aaPredicted RBP21.82■■□□□ 1.08
CMTM1-210ENST00000528441 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
CMTM1-210ENST00000528441 CCDC180Q9P1Z9 1646 aa19.63■□□□□ 0.73
CMTM1-210ENST00000528441 ABCC9O60706 1549 aa19.46■□□□□ 0.71
CMTM1-210ENST00000528441 DCAF8L2P0C7V8 631 aa18.69■□□□□ 0.58
CMTM1-210ENST00000528441 RB1CC1Q8TDY2 1594 aa18.6■□□□□ 0.57
CMTM1-210ENST00000528441 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
CMTM1-210ENST00000528441 PHF23Q9BUL5 403 aaPredicted RBP18.5■□□□□ 0.55
CMTM1-210ENST00000528441 NACADO15069 1562 aa18.48■□□□□ 0.55
CMTM1-210ENST00000528441 ZCCHC6Q5VYS8 1495 aaKnown RBP18.26■□□□□ 0.51
CMTM1-210ENST00000528441 MYO15BQ96JP2 1530 aa18.21■□□□□ 0.51
CMTM1-210ENST00000528441 PABPN1Q86U42 306 aaKnown RBP eCLIP18.15■□□□□ 0.5
CMTM1-210ENST00000528441 UNC13AQ9UPW8 1703 aa18.14■□□□□ 0.49
CMTM1-210ENST00000528441 DCAF1Q9Y4B6 1507 aa18.09■□□□□ 0.49
CMTM1-210ENST00000528441 SCRIBQ14160 1630 aa18.01■□□□□ 0.47
CMTM1-210ENST00000528441 BICRAQ9NZM4 1560 aa17.92■□□□□ 0.46
CMTM1-210ENST00000528441 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
CMTM1-210ENST00000528441 SHROOM4Q9ULL8 1493 aa17.74■□□□□ 0.43
CMTM1-210ENST00000528441 EIF4G1Q04637 1599 aaKnown RBP17.55■□□□□ 0.4
CMTM1-210ENST00000528441 CC2D2AQ9P2K1 1620 aa17.54■□□□□ 0.4
CMTM1-210ENST00000528441 CECR2Q9BXF3 1484 aa17.46■□□□□ 0.39
CMTM1-210ENST00000528441 FOXD1Q16676 465 aa17.25■□□□□ 0.35
CMTM1-210ENST00000528441 SMARCA4P51532 1647 aa17.12■□□□□ 0.33
CMTM1-210ENST00000528441 BAZ1AQ9NRL2 1556 aaPredicted RBP17.09■□□□□ 0.33
CMTM1-210ENST00000528441 SMARCA2P51531 1590 aa17.06■□□□□ 0.32
CMTM1-210ENST00000528441 ATAD2BQ9ULI0 1458 aa17.03■□□□□ 0.32
CMTM1-210ENST00000528441 NCAPD3P42695 1498 aa16.99■□□□□ 0.31
CMTM1-210ENST00000528441 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
CMTM1-210ENST00000528441 BAZ1BQ9UIG0 1483 aaKnown RBP16.98■□□□□ 0.31
CMTM1-210ENST00000528441 HMGXB3Q12766 1538 aa16.95■□□□□ 0.3
CMTM1-210ENST00000528441 MROH2BQ7Z745 1585 aa16.94■□□□□ 0.3
CMTM1-210ENST00000528441 ERCC6Q03468 1493 aa16.86■□□□□ 0.29
CMTM1-210ENST00000528441 PEG3Q9GZU2 1588 aa16.85■□□□□ 0.29
CMTM1-210ENST00000528441 WIZO95785 1651 aa16.81■□□□□ 0.28
CMTM1-210ENST00000528441 NESP48681 1621 aa16.73■□□□□ 0.27
CMTM1-210ENST00000528441 RSF1Q96T23 1441 aaPredicted RBP16.67■□□□□ 0.26
CMTM1-210ENST00000528441 LAMC3Q9Y6N6 1575 aa16.66■□□□□ 0.26
CMTM1-210ENST00000528441 CUX2O14529 1486 aa16.6■□□□□ 0.25
CMTM1-210ENST00000528441 TOP2AP11388 1531 aaKnown RBP16.6■□□□□ 0.25
CMTM1-210ENST00000528441 PDS5BQ9NTI5 1447 aa16.59■□□□□ 0.25
CMTM1-210ENST00000528441 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
CMTM1-210ENST00000528441 CADPSQ9ULU8 1353 aa16.55■□□□□ 0.24
CMTM1-210ENST00000528441 THOC2Q8NI27 1593 aaKnown RBP16.48■□□□□ 0.23
CMTM1-210ENST00000528441 CEP164Q9UPV0 1460 aa16.44■□□□□ 0.22
CMTM1-210ENST00000528441 FANCD2Q9BXW9 1451 aa16.42■□□□□ 0.22
CMTM1-210ENST00000528441 MRC2Q9UBG0 1479 aa16.42■□□□□ 0.22
CMTM1-210ENST00000528441 PPP6R1Q9UPN7 881 aa16.41■□□□□ 0.22
CMTM1-210ENST00000528441 CFTRP13569 1480 aa16.39■□□□□ 0.21
CMTM1-210ENST00000528441 CCDC88BA6NC98 1476 aa16.38■□□□□ 0.21
CMTM1-210ENST00000528441 ADRA2BP18089 450 aa16.37■□□□□ 0.21
CMTM1-210ENST00000528441 SUPT5HO00267 1087 aaKnown RBP16.35■□□□□ 0.21
CMTM1-210ENST00000528441 PRDM2Q13029 1718 aa16.34■□□□□ 0.21
CMTM1-210ENST00000528441 WDR62O43379 1518 aa16.32■□□□□ 0.2
CMTM1-210ENST00000528441 DNAJC5Q9H3Z4 198 aa16.23■□□□□ 0.19
CMTM1-210ENST00000528441 URB2Q14146 1524 aaKnown RBP16.21■□□□□ 0.19
CMTM1-210ENST00000528441 PIAS4Q8N2W9 510 aaPredicted RBP16.19■□□□□ 0.18
CMTM1-210ENST00000528441 TOPBP1Q92547 1522 aa16.11■□□□□ 0.17
CMTM1-210ENST00000528441 ABCC8Q09428 1581 aa16.11■□□□□ 0.17
CMTM1-210ENST00000528441 DNMBPQ6XZF7 1577 aa16.09■□□□□ 0.17
CMTM1-210ENST00000528441 IFT140Q96RY7 1462 aa16.06■□□□□ 0.16
CMTM1-210ENST00000528441 MSH5O43196 834 aa16.02■□□□□ 0.16
CMTM1-210ENST00000528441 ZNF608Q9ULD9 1512 aaPredicted RBP15.99■□□□□ 0.15
CMTM1-210ENST00000528441 EIF4G3O43432 1585 aaKnown RBP15.96■□□□□ 0.15
CMTM1-210ENST00000528441 POLA1P09884 1462 aaPredicted RBP15.96■□□□□ 0.14
CMTM1-210ENST00000528441 FGD5Q6ZNL6 1462 aa15.93■□□□□ 0.14
CMTM1-210ENST00000528441 OSCARQ8IYS5 282 aa15.93■□□□□ 0.14
CMTM1-210ENST00000528441 SOGA1O94964 1423 aa15.93■□□□□ 0.14
CMTM1-210ENST00000528441 RAD54L2Q9Y4B4 1467 aa15.92■□□□□ 0.14
CMTM1-210ENST00000528441 CUX1P39880 1505 aa15.91■□□□□ 0.14
CMTM1-210ENST00000528441 FBLN2P98095 1184 aa15.91■□□□□ 0.14
CMTM1-210ENST00000528441 AQRO60306 1485 aaKnown RBP eCLIP15.9■□□□□ 0.14
CMTM1-210ENST00000528441 TARBP1Q13395 1621 aaKnown RBP15.9■□□□□ 0.14
CMTM1-210ENST00000528441 POTEDQ86YR6 584 aa15.88■□□□□ 0.13
CMTM1-210ENST00000528441 TRIM41Q8WV44 630 aa15.86■□□□□ 0.13
CMTM1-210ENST00000528441 TDRD9Q8NDG6 1382 aaKnown RBP15.86■□□□□ 0.13
CMTM1-210ENST00000528441 CHD1O14646 1710 aa15.82■□□□□ 0.12
CMTM1-210ENST00000528441 WRNQ14191 1432 aaPredicted RBP eCLIP15.8■□□□□ 0.12
CMTM1-210ENST00000528441 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
CMTM1-210ENST00000528441 SNAPC4Q5SXM2 1469 aa15.78■□□□□ 0.12
CMTM1-210ENST00000528441 CHMP7Q8WUX9 453 aaPredicted RBP15.77■□□□□ 0.12
CMTM1-210ENST00000528441 PBRM1Q86U86 1689 aa15.76■□□□□ 0.11
CMTM1-210ENST00000528441 GRIN2BQ13224 1484 aa15.75■□□□□ 0.11
CMTM1-210ENST00000528441 SYNJ1O43426 1573 aa15.75■□□□□ 0.11
CMTM1-210ENST00000528441 GAPVD1Q14C86 1478 aa15.74■□□□□ 0.11
CMTM1-210ENST00000528441 TOP2BQ02880 1626 aa15.74■□□□□ 0.11
CMTM1-210ENST00000528441 BIVM-ERCC5R4GMW8 1640 aa15.74■□□□□ 0.11
CMTM1-210ENST00000528441 MAGI1Q96QZ7 1491 aaPredicted RBP15.71■□□□□ 0.11
CMTM1-210ENST00000528441 ABCA10Q8WWZ4 1543 aa15.71■□□□□ 0.11
CMTM1-210ENST00000528441 RIMBP3CA6NJZ7 1639 aa15.68■□□□□ 0.1
CMTM1-210ENST00000528441 RIMBP3BA6NNM3 1639 aa15.68■□□□□ 0.1
CMTM1-210ENST00000528441 RIMBP3Q9UFD9 1639 aa15.68■□□□□ 0.1
CMTM1-210ENST00000528441 ABCA5Q8WWZ7 1642 aa15.67■□□□□ 0.1
CMTM1-210ENST00000528441 SYNJ2O15056 1496 aa15.65■□□□□ 0.1
CMTM1-210ENST00000528441 ARHGEF11O15085 1522 aa15.64■□□□□ 0.09
CMTM1-210ENST00000528441 CYB5RLQ6IPT4 315 aa15.58■□□□□ 0.08
CMTM1-210ENST00000528441 ADAMTS12P58397 1594 aa15.58■□□□□ 0.08
CMTM1-210ENST00000528441 ERICH3Q5RHP9 1530 aa15.54■□□□□ 0.08
CMTM1-210ENST00000528441 GRIN2AQ12879 1464 aa15.54■□□□□ 0.08
CMTM1-210ENST00000528441 CLASP1Q7Z460 1538 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms