RNA–Protein interactions for RNA: ENST00000528362.1

PSMC3-205, Transcript of proteasome 26S subunit, ATPase 3, human

TSL 2

Gene PSMC3, Length 546 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC3-205	ENST00000528362	NISCH	Q9Y2I1	1504 aa		28.92	■■■□□ 2.22
PSMC3-205	ENST00000528362	CCDC180	Q9P1Z9	1646 aa		25.69	■■□□□ 1.7
PSMC3-205	ENST00000528362	ABCC9	O60706	1549 aa		25.42	■■□□□ 1.66
PSMC3-205	ENST00000528362	RB1CC1	Q8TDY2	1594 aa		24.31	■■□□□ 1.48
PSMC3-205	ENST00000528362	NACAD	O15069	1562 aa		24.25	■■□□□ 1.47
PSMC3-205	ENST00000528362	DCAF8L2	P0C7V8	631 aa		24.23	■■□□□ 1.47
PSMC3-205	ENST00000528362	MYO15B	Q96JP2	1530 aa		24.08	■■□□□ 1.45
PSMC3-205	ENST00000528362	ZCCHC6	Q5VYS8	1495 aa	Known RBP	24.07	■■□□□ 1.44
PSMC3-205	ENST00000528362	DCAF1	Q9Y4B6	1507 aa		23.9	■■□□□ 1.42
PSMC3-205	ENST00000528362	PABPN1	Q86U42	306 aa	Known RBP eCLIP	23.75	■■□□□ 1.39
PSMC3-205	ENST00000528362	DNAJC5B	Q9UF47	199 aa		23.67	■■□□□ 1.38
PSMC3-205	ENST00000528362	UNC13A	Q9UPW8	1703 aa		23.64	■■□□□ 1.38
PSMC3-205	ENST00000528362	BICRA	Q9NZM4	1560 aa		23.61	■■□□□ 1.37
PSMC3-205	ENST00000528362	SCRIB	Q14160	1630 aa		23.49	■■□□□ 1.35
PSMC3-205	ENST00000528362	SHROOM4	Q9ULL8	1493 aa		23.36	■■□□□ 1.33
PSMC3-205	ENST00000528362	EIF4G1	Q04637	1599 aa	Known RBP	23.01	■■□□□ 1.27
PSMC3-205	ENST00000528362	CC2D2A	Q9P2K1	1620 aa		22.93	■■□□□ 1.26
PSMC3-205	ENST00000528362	CECR2	Q9BXF3	1484 aa		22.85	■■□□□ 1.25
PSMC3-205	ENST00000528362	SMARCA4	P51532	1647 aa		22.44	■■□□□ 1.18
PSMC3-205	ENST00000528362	NCAPD3	P42695	1498 aa		22.43	■■□□□ 1.18
PSMC3-205	ENST00000528362	ATAD2B	Q9ULI0	1458 aa		22.42	■■□□□ 1.18
PSMC3-205	ENST00000528362	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	22.4	■■□□□ 1.18
PSMC3-205	ENST00000528362	SMARCA2	P51531	1590 aa		22.33	■■□□□ 1.17
PSMC3-205	ENST00000528362	MROH2B	Q7Z745	1585 aa		22.29	■■□□□ 1.16
PSMC3-205	ENST00000528362	HMGXB3	Q12766	1538 aa		22.27	■■□□□ 1.16
PSMC3-205	ENST00000528362	PEG3	Q9GZU2	1588 aa		22.24	■■□□□ 1.15
PSMC3-205	ENST00000528362	BAZ1B	Q9UIG0	1483 aa	Known RBP	22.21	■■□□□ 1.15
PSMC3-205	ENST00000528362	RSF1	Q96T23	1441 aa	Predicted RBP	22	■■□□□ 1.11
PSMC3-205	ENST00000528362	WIZ	O95785	1651 aa		21.98	■■□□□ 1.11
PSMC3-205	ENST00000528362	NES	P48681	1621 aa		21.95	■■□□□ 1.1
PSMC3-205	ENST00000528362	ERCC6	Q03468	1493 aa		21.9	■■□□□ 1.1
PSMC3-205	ENST00000528362	DNAJC5	Q9H3Z4	198 aa		21.83	■■□□□ 1.09
PSMC3-205	ENST00000528362	LAMC3	Q9Y6N6	1575 aa		21.8	■■□□□ 1.08
PSMC3-205	ENST00000528362	TOP2A	P11388	1531 aa	Known RBP	21.78	■■□□□ 1.08
PSMC3-205	ENST00000528362	CADPS	Q9ULU8	1353 aa		21.77	■■□□□ 1.08
PSMC3-205	ENST00000528362	CUX2	O14529	1486 aa		21.74	■■□□□ 1.07
PSMC3-205	ENST00000528362	PDS5B	Q9NTI5	1447 aa		21.71	■■□□□ 1.07
PSMC3-205	ENST00000528362	THOC2	Q8NI27	1593 aa	Known RBP	21.61	■■□□□ 1.05
PSMC3-205	ENST00000528362	CFTR	P13569	1480 aa		21.6	■■□□□ 1.05
PSMC3-205	ENST00000528362	KIF21A	Q7Z4S6	1674 aa		21.56	■■□□□ 1.04
PSMC3-205	ENST00000528362	CCDC88B	A6NC98	1476 aa		21.55	■■□□□ 1.04
PSMC3-205	ENST00000528362	FANCD2	Q9BXW9	1451 aa		21.52	■■□□□ 1.03
PSMC3-205	ENST00000528362	MRC2	Q9UBG0	1479 aa		21.51	■■□□□ 1.03
PSMC3-205	ENST00000528362	CEP164	Q9UPV0	1460 aa		21.49	■■□□□ 1.03
PSMC3-205	ENST00000528362	WDR62	O43379	1518 aa		21.43	■■□□□ 1.02
PSMC3-205	ENST00000528362	URB2	Q14146	1524 aa	Known RBP	21.32	■■□□□ 1
PSMC3-205	ENST00000528362	SUPT5H	O00267	1087 aa	Known RBP	21.29	■■□□□ 1
PSMC3-205	ENST00000528362	PRDM2	Q13029	1718 aa		21.23	■□□□□ 0.99
PSMC3-205	ENST00000528362	TOPBP1	Q92547	1522 aa		21.14	■□□□□ 0.98
PSMC3-205	ENST00000528362	ABCC8	Q09428	1581 aa		21.09	■□□□□ 0.97
PSMC3-205	ENST00000528362	DNMBP	Q6XZF7	1577 aa		21.07	■□□□□ 0.96
PSMC3-205	ENST00000528362	IFT140	Q96RY7	1462 aa		21.06	■□□□□ 0.96
PSMC3-205	ENST00000528362	ZNF608	Q9ULD9	1512 aa	Predicted RBP	21	■□□□□ 0.95
PSMC3-205	ENST00000528362	POLA1	P09884	1462 aa	Predicted RBP	20.96	■□□□□ 0.95
PSMC3-205	ENST00000528362	CUX1	P39880	1505 aa		20.93	■□□□□ 0.94
PSMC3-205	ENST00000528362	TARBP1	Q13395	1621 aa	Known RBP	20.89	■□□□□ 0.94
PSMC3-205	ENST00000528362	FGD5	Q6ZNL6	1462 aa		20.88	■□□□□ 0.93
PSMC3-205	ENST00000528362	RAD54L2	Q9Y4B4	1467 aa		20.88	■□□□□ 0.93
PSMC3-205	ENST00000528362	SOGA1	O94964	1423 aa		20.87	■□□□□ 0.93
PSMC3-205	ENST00000528362	AQR	O60306	1485 aa	Known RBP eCLIP	20.85	■□□□□ 0.93	3e-7	■■■□□ 16.9
PSMC3-205	ENST00000528362	EIF4G3	O43432	1585 aa	Known RBP	20.85	■□□□□ 0.93
PSMC3-205	ENST00000528362	OSCAR	Q8IYS5	282 aa		20.81	■□□□□ 0.92
PSMC3-205	ENST00000528362	TDRD9	Q8NDG6	1382 aa	Known RBP	20.8	■□□□□ 0.92
PSMC3-205	ENST00000528362	TRIM41	Q8WV44	630 aa		20.75	■□□□□ 0.91
PSMC3-205	ENST00000528362	WRN	Q14191	1432 aa	Predicted RBP eCLIP	20.73	■□□□□ 0.91
PSMC3-205	ENST00000528362	WDR97	A6NE52	1622 aa		20.69	■□□□□ 0.9
PSMC3-205	ENST00000528362	ABCA10	Q8WWZ4	1543 aa		20.67	■□□□□ 0.9
PSMC3-205	ENST00000528362	SYNJ1	O43426	1573 aa		20.66	■□□□□ 0.9
PSMC3-205	ENST00000528362	TOP2B	Q02880	1626 aa		20.65	■□□□□ 0.9
PSMC3-205	ENST00000528362	SNAPC4	Q5SXM2	1469 aa		20.65	■□□□□ 0.9
PSMC3-205	ENST00000528362	GRIN2B	Q13224	1484 aa		20.64	■□□□□ 0.89
PSMC3-205	ENST00000528362	BIVM-ERCC5	R4GMW8	1640 aa		20.63	■□□□□ 0.89
PSMC3-205	ENST00000528362	FBLN2	P98095	1184 aa		20.62	■□□□□ 0.89
PSMC3-205	ENST00000528362	GAPVD1	Q14C86	1478 aa		20.62	■□□□□ 0.89
PSMC3-205	ENST00000528362	MAGI1	Q96QZ7	1491 aa	Predicted RBP	20.6	■□□□□ 0.89
PSMC3-205	ENST00000528362	ABCA5	Q8WWZ7	1642 aa		20.56	■□□□□ 0.88
PSMC3-205	ENST00000528362	CHD1	O14646	1710 aa		20.54	■□□□□ 0.88
PSMC3-205	ENST00000528362	CHMP7	Q8WUX9	453 aa	Predicted RBP	20.54	■□□□□ 0.88
PSMC3-205	ENST00000528362	SYNJ2	O15056	1496 aa		20.53	■□□□□ 0.88
PSMC3-205	ENST00000528362	ARHGEF11	O15085	1522 aa		20.48	■□□□□ 0.87
PSMC3-205	ENST00000528362	PBRM1	Q86U86	1689 aa		20.47	■□□□□ 0.87
PSMC3-205	ENST00000528362	RIMBP3C	A6NJZ7	1639 aa		20.45	■□□□□ 0.87
PSMC3-205	ENST00000528362	RIMBP3B	A6NNM3	1639 aa		20.45	■□□□□ 0.87
PSMC3-205	ENST00000528362	RIMBP3	Q9UFD9	1639 aa		20.45	■□□□□ 0.87
PSMC3-205	ENST00000528362	CLASP1	Q7Z460	1538 aa		20.43	■□□□□ 0.86
PSMC3-205	ENST00000528362	ADAMTS12	P58397	1594 aa		20.4	■□□□□ 0.86
PSMC3-205	ENST00000528362	ERICH3	Q5RHP9	1530 aa		20.4	■□□□□ 0.86
PSMC3-205	ENST00000528362	FHAD1	B1AJZ9	1412 aa		20.39	■□□□□ 0.85
PSMC3-205	ENST00000528362	GRIN2A	Q12879	1464 aa		20.37	■□□□□ 0.85
PSMC3-205	ENST00000528362	ARAP1	Q96P48	1450 aa		20.33	■□□□□ 0.85
PSMC3-205	ENST00000528362	NUP160	Q12769	1436 aa		20.32	■□□□□ 0.84
PSMC3-205	ENST00000528362	CYB5RL	Q6IPT4	315 aa		20.31	■□□□□ 0.84
PSMC3-205	ENST00000528362	KIF27	Q86VH2	1401 aa		20.3	■□□□□ 0.84
PSMC3-205	ENST00000528362	IGF1R	P08069	1367 aa		20.28	■□□□□ 0.84
PSMC3-205	ENST00000528362	CEP170	Q5SW79	1584 aa		20.27	■□□□□ 0.84
PSMC3-205	ENST00000528362	ERCC6L2	Q5T890	1561 aa		20.13	■□□□□ 0.81
PSMC3-205	ENST00000528362	CARMIL1	Q5VZK9	1371 aa		20.13	■□□□□ 0.81
PSMC3-205	ENST00000528362	CUL7	Q14999	1698 aa		20.13	■□□□□ 0.81
PSMC3-205	ENST00000528362	SHROOM2	Q13796	1616 aa		20.11	■□□□□ 0.81
PSMC3-205	ENST00000528362	JPH4	Q96JJ6	628 aa		20.1	■□□□□ 0.81

Retrieved 100 of 20,778 RNA–protein pairs in 29 ms