RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 NISCHQ9Y2I1 1504 aa26.58■■□□□ 1.85
CPSF1-203ENST00000527916 ABCC9O60706 1549 aa24.46■■□□□ 1.51
CPSF1-203ENST00000527916 CCDC180Q9P1Z9 1646 aa24.03■■□□□ 1.44
CPSF1-203ENST00000527916 DNAJC5BQ9UF47 199 aa23.31■■□□□ 1.32
CPSF1-203ENST00000527916 RB1CC1Q8TDY2 1594 aa23.12■■□□□ 1.29
CPSF1-203ENST00000527916 NACADO15069 1562 aa22.86■■□□□ 1.25
CPSF1-203ENST00000527916 PABPN1Q86U42 306 aaKnown RBP eCLIP22.73■■□□□ 1.23
CPSF1-203ENST00000527916 DCAF8L2P0C7V8 631 aa22.7■■□□□ 1.22
CPSF1-203ENST00000527916 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
CPSF1-203ENST00000527916 MYO15BQ96JP2 1530 aa22.4■■□□□ 1.18
CPSF1-203ENST00000527916 BICRAQ9NZM4 1560 aa22.39■■□□□ 1.18
CPSF1-203ENST00000527916 SHROOM4Q9ULL8 1493 aa22.14■■□□□ 1.13
CPSF1-203ENST00000527916 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
CPSF1-203ENST00000527916 CC2D2AQ9P2K1 1620 aa22.07■■□□□ 1.12
CPSF1-203ENST00000527916 DCAF1Q9Y4B6 1507 aa21.94■■□□□ 1.1
CPSF1-203ENST00000527916 EIF4G1Q04637 1599 aaKnown RBP21.91■■□□□ 1.1
CPSF1-203ENST00000527916 ZCCHC6Q5VYS8 1495 aaKnown RBP21.91■■□□□ 1.1
CPSF1-203ENST00000527916 SCRIBQ14160 1630 aa21.86■■□□□ 1.09
CPSF1-203ENST00000527916 DNAJC5Q9H3Z4 198 aa21.79■■□□□ 1.08
CPSF1-203ENST00000527916 CUX2O14529 1486 aa21.3■■□□□ 1
CPSF1-203ENST00000527916 ERCC6Q03468 1493 aa21.2■□□□□ 0.98
CPSF1-203ENST00000527916 NCAPD3P42695 1498 aa21.11■□□□□ 0.97
CPSF1-203ENST00000527916 ATAD2BQ9ULI0 1458 aa20.96■□□□□ 0.95
CPSF1-203ENST00000527916 SMARCA2P51531 1590 aa20.91■□□□□ 0.94
CPSF1-203ENST00000527916 HMGXB3Q12766 1538 aa20.89■□□□□ 0.94
CPSF1-203ENST00000527916 NESP48681 1621 aa20.86■□□□□ 0.93
CPSF1-203ENST00000527916 SMARCA4P51532 1647 aa20.82■□□□□ 0.92
CPSF1-203ENST00000527916 BAZ1BQ9UIG0 1483 aaKnown RBP20.76■□□□□ 0.91
CPSF1-203ENST00000527916 THOC2Q8NI27 1593 aaKnown RBP20.73■□□□□ 0.91
CPSF1-203ENST00000527916 LAMC3Q9Y6N6 1575 aa20.7■□□□□ 0.9
CPSF1-203ENST00000527916 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
CPSF1-203ENST00000527916 TRIM41Q8WV44 630 aa20.67■□□□□ 0.9
CPSF1-203ENST00000527916 PDS5BQ9NTI5 1447 aa20.64■□□□□ 0.89
CPSF1-203ENST00000527916 PEG3Q9GZU2 1588 aa20.62■□□□□ 0.89
CPSF1-203ENST00000527916 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.88
CPSF1-203ENST00000527916 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
CPSF1-203ENST00000527916 MROH2BQ7Z745 1585 aa20.45■□□□□ 0.86
CPSF1-203ENST00000527916 MRC2Q9UBG0 1479 aa20.44■□□□□ 0.86
CPSF1-203ENST00000527916 WDR62O43379 1518 aa20.38■□□□□ 0.85
CPSF1-203ENST00000527916 OSCARQ8IYS5 282 aa20.3■□□□□ 0.84
CPSF1-203ENST00000527916 CEP164Q9UPV0 1460 aa20.28■□□□□ 0.84
CPSF1-203ENST00000527916 FANCD2Q9BXW9 1451 aa20.21■□□□□ 0.83
CPSF1-203ENST00000527916 WIZO95785 1651 aa20.17■□□□□ 0.82
CPSF1-203ENST00000527916 CFTRP13569 1480 aa20.11■□□□□ 0.81
CPSF1-203ENST00000527916 URB2Q14146 1524 aaKnown RBP20.03■□□□□ 0.8
CPSF1-203ENST00000527916 RIMBP3CA6NJZ7 1639 aa19.99■□□□□ 0.79
CPSF1-203ENST00000527916 RIMBP3BA6NNM3 1639 aa19.99■□□□□ 0.79
CPSF1-203ENST00000527916 RIMBP3Q9UFD9 1639 aa19.99■□□□□ 0.79
CPSF1-203ENST00000527916 TOP2AP11388 1531 aaKnown RBP19.92■□□□□ 0.78
CPSF1-203ENST00000527916 IFT140Q96RY7 1462 aa19.9■□□□□ 0.78
CPSF1-203ENST00000527916 ARHGEF11O15085 1522 aa19.9■□□□□ 0.78
CPSF1-203ENST00000527916 RSF1Q96T23 1441 aaPredicted RBP19.89■□□□□ 0.77
CPSF1-203ENST00000527916 ZNF608Q9ULD9 1512 aaPredicted RBP19.86■□□□□ 0.77
CPSF1-203ENST00000527916 PRDM2Q13029 1718 aa19.85■□□□□ 0.77
CPSF1-203ENST00000527916 CYB5RLQ6IPT4 315 aa19.84■□□□□ 0.77
CPSF1-203ENST00000527916 TRHP20396 242 aaPredicted RBP19.78■□□□□ 0.76
CPSF1-203ENST00000527916 TOPBP1Q92547 1522 aa19.76■□□□□ 0.75
CPSF1-203ENST00000527916 ABCC8Q09428 1581 aa19.75■□□□□ 0.75
CPSF1-203ENST00000527916 EIF4G3O43432 1585 aaKnown RBP19.73■□□□□ 0.75
CPSF1-203ENST00000527916 CCDC88BA6NC98 1476 aa19.7■□□□□ 0.74
CPSF1-203ENST00000527916 FBLN2P98095 1184 aa19.67■□□□□ 0.74
CPSF1-203ENST00000527916 ARAP1Q96P48 1450 aa19.67■□□□□ 0.74
CPSF1-203ENST00000527916 DNMBPQ6XZF7 1577 aa19.66■□□□□ 0.74
CPSF1-203ENST00000527916 CHD1O14646 1710 aa19.65■□□□□ 0.74
CPSF1-203ENST00000527916 AQRO60306 1485 aaKnown RBP eCLIP19.65■□□□□ 0.74
CPSF1-203ENST00000527916 TARBP1Q13395 1621 aaKnown RBP19.6■□□□□ 0.73
CPSF1-203ENST00000527916 AEBP2Q6ZN18 517 aaPredicted RBP19.56■□□□□ 0.72
CPSF1-203ENST00000527916 POLA1P09884 1462 aaPredicted RBP19.53■□□□□ 0.72
CPSF1-203ENST00000527916 TDRD9Q8NDG6 1382 aaKnown RBP19.47■□□□□ 0.71
CPSF1-203ENST00000527916 CHMP7Q8WUX9 453 aaPredicted RBP19.47■□□□□ 0.71
CPSF1-203ENST00000527916 SOGA1O94964 1423 aa19.47■□□□□ 0.71
CPSF1-203ENST00000527916 RAD54L2Q9Y4B4 1467 aa19.46■□□□□ 0.71
CPSF1-203ENST00000527916 SNAPC4Q5SXM2 1469 aa19.43■□□□□ 0.7
CPSF1-203ENST00000527916 CLASP1Q7Z460 1538 aa19.42■□□□□ 0.7
CPSF1-203ENST00000527916 SYNJ1O43426 1573 aa19.42■□□□□ 0.7
CPSF1-203ENST00000527916 WDR97A6NE52 1622 aa19.42■□□□□ 0.7
CPSF1-203ENST00000527916 MAGI1Q96QZ7 1491 aaPredicted RBP19.4■□□□□ 0.7
CPSF1-203ENST00000527916 GRIN2BQ13224 1484 aa19.35■□□□□ 0.69
CPSF1-203ENST00000527916 FGD5Q6ZNL6 1462 aa19.35■□□□□ 0.69
CPSF1-203ENST00000527916 SYNJ2O15056 1496 aa19.34■□□□□ 0.69
CPSF1-203ENST00000527916 GAPVD1Q14C86 1478 aa19.29■□□□□ 0.68
CPSF1-203ENST00000527916 CUX1P39880 1505 aa19.24■□□□□ 0.67
CPSF1-203ENST00000527916 PBRM1Q86U86 1689 aa19.19■□□□□ 0.66
CPSF1-203ENST00000527916 ABCA10Q8WWZ4 1543 aa19.11■□□□□ 0.65
CPSF1-203ENST00000527916 ABCA5Q8WWZ7 1642 aa19.09■□□□□ 0.65
CPSF1-203ENST00000527916 GRIN2AQ12879 1464 aa19.08■□□□□ 0.64
CPSF1-203ENST00000527916 ERCC6L2Q5T890 1561 aa19.06■□□□□ 0.64
CPSF1-203ENST00000527916 CEP170Q5SW79 1584 aa19.04■□□□□ 0.64
CPSF1-203ENST00000527916 NUP160Q12769 1436 aa19.03■□□□□ 0.64
CPSF1-203ENST00000527916 WRNQ14191 1432 aaPredicted RBP eCLIP19■□□□□ 0.63
CPSF1-203ENST00000527916 ADAMTS12P58397 1594 aa18.99■□□□□ 0.63
CPSF1-203ENST00000527916 FHAD1B1AJZ9 1412 aa18.97■□□□□ 0.63
CPSF1-203ENST00000527916 SHROOM2Q13796 1616 aa18.96■□□□□ 0.63
CPSF1-203ENST00000527916 KIF13AQ9H1H9 1805 aa18.95■□□□□ 0.62
CPSF1-203ENST00000527916 NPM1P06748 294 aaKnown RBP eCLIP18.91■□□□□ 0.62
CPSF1-203ENST00000527916 PRG4Q92954 1404 aaPredicted RBP18.91■□□□□ 0.62
CPSF1-203ENST00000527916 FAM69CQ0P6D2 419 aa18.89■□□□□ 0.61
CPSF1-203ENST00000527916 JPH4Q96JJ6 628 aa18.88■□□□□ 0.61
CPSF1-203ENST00000527916 ERICH3Q5RHP9 1530 aa18.88■□□□□ 0.61
CPSF1-203ENST00000527916 ABCC10Q5T3U5 1492 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms