RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 NISCHQ9Y2I1 1504 aa38.05■■■■□ 3.68
CAPN1-213ENST00000527897 CCDC180Q9P1Z9 1646 aa33.93■■■■□ 3.02
CAPN1-213ENST00000527897 ABCC9O60706 1549 aa33.6■■■□□ 2.97
CAPN1-213ENST00000527897 RB1CC1Q8TDY2 1594 aa32.12■■■□□ 2.73
CAPN1-213ENST00000527897 DCAF8L2P0C7V8 631 aa32.12■■■□□ 2.73
CAPN1-213ENST00000527897 NACADO15069 1562 aa31.98■■■□□ 2.71
CAPN1-213ENST00000527897 ZCCHC6Q5VYS8 1495 aaKnown RBP31.62■■■□□ 2.65
CAPN1-213ENST00000527897 MYO15BQ96JP2 1530 aa31.59■■■□□ 2.65
CAPN1-213ENST00000527897 UNC13AQ9UPW8 1703 aa31.43■■■□□ 2.62
CAPN1-213ENST00000527897 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.61
CAPN1-213ENST00000527897 PABPN1Q86U42 306 aaKnown RBP eCLIP31.38■■■□□ 2.61
CAPN1-213ENST00000527897 BICRAQ9NZM4 1560 aa31.13■■■□□ 2.57
CAPN1-213ENST00000527897 SCRIBQ14160 1630 aa31.07■■■□□ 2.56
CAPN1-213ENST00000527897 DNAJC5BQ9UF47 199 aa31.05■■■□□ 2.56
CAPN1-213ENST00000527897 SHROOM4Q9ULL8 1493 aa30.7■■■□□ 2.5
CAPN1-213ENST00000527897 EIF4G1Q04637 1599 aaKnown RBP30.37■■■□□ 2.45
CAPN1-213ENST00000527897 CC2D2AQ9P2K1 1620 aa30.33■■■□□ 2.45
CAPN1-213ENST00000527897 CECR2Q9BXF3 1484 aa30.18■■■□□ 2.42
CAPN1-213ENST00000527897 SMARCA4P51532 1647 aa29.61■■■□□ 2.33
CAPN1-213ENST00000527897 BAZ1AQ9NRL2 1556 aaPredicted RBP29.52■■■□□ 2.32
CAPN1-213ENST00000527897 ATAD2BQ9ULI0 1458 aa29.5■■■□□ 2.31
CAPN1-213ENST00000527897 NCAPD3P42695 1498 aa29.48■■■□□ 2.31
CAPN1-213ENST00000527897 SMARCA2P51531 1590 aa29.45■■■□□ 2.31
CAPN1-213ENST00000527897 MROH2BQ7Z745 1585 aa29.36■■■□□ 2.29
CAPN1-213ENST00000527897 HMGXB3Q12766 1538 aa29.33■■■□□ 2.29
CAPN1-213ENST00000527897 BAZ1BQ9UIG0 1483 aaKnown RBP29.29■■■□□ 2.28
CAPN1-213ENST00000527897 PEG3Q9GZU2 1588 aa29.24■■■□□ 2.27
CAPN1-213ENST00000527897 WIZO95785 1651 aa29.06■■■□□ 2.24
CAPN1-213ENST00000527897 ERCC6Q03468 1493 aa29■■■□□ 2.23
CAPN1-213ENST00000527897 NESP48681 1621 aa28.98■■■□□ 2.23
CAPN1-213ENST00000527897 RSF1Q96T23 1441 aaPredicted RBP28.9■■■□□ 2.22
CAPN1-213ENST00000527897 LAMC3Q9Y6N6 1575 aa28.79■■■□□ 2.2
CAPN1-213ENST00000527897 CUX2O14529 1486 aa28.69■■■□□ 2.18
CAPN1-213ENST00000527897 TOP2AP11388 1531 aaKnown RBP28.68■■■□□ 2.18
CAPN1-213ENST00000527897 CADPSQ9ULU8 1353 aa28.65■■■□□ 2.18
CAPN1-213ENST00000527897 PDS5BQ9NTI5 1447 aa28.63■■■□□ 2.17
CAPN1-213ENST00000527897 KIF21AQ7Z4S6 1674 aa28.63■■■□□ 2.17
CAPN1-213ENST00000527897 THOC2Q8NI27 1593 aaKnown RBP28.54■■■□□ 2.16
CAPN1-213ENST00000527897 CFTRP13569 1480 aa28.4■■■□□ 2.14
CAPN1-213ENST00000527897 CCDC88BA6NC98 1476 aa28.36■■■□□ 2.13
CAPN1-213ENST00000527897 FANCD2Q9BXW9 1451 aa28.36■■■□□ 2.13
CAPN1-213ENST00000527897 MRC2Q9UBG0 1479 aa28.36■■■□□ 2.13
CAPN1-213ENST00000527897 CEP164Q9UPV0 1460 aa28.36■■■□□ 2.13
CAPN1-213ENST00000527897 WDR62O43379 1518 aa28.24■■■□□ 2.11
CAPN1-213ENST00000527897 PRDM2Q13029 1718 aa28.21■■■□□ 2.11
CAPN1-213ENST00000527897 DNAJC5Q9H3Z4 198 aa28.16■■■□□ 2.1
CAPN1-213ENST00000527897 SUPT5HO00267 1087 aaKnown RBP28.11■■■□□ 2.09
CAPN1-213ENST00000527897 URB2Q14146 1524 aaKnown RBP28.09■■■□□ 2.09
CAPN1-213ENST00000527897 TOPBP1Q92547 1522 aa27.87■■■□□ 2.05
CAPN1-213ENST00000527897 DNMBPQ6XZF7 1577 aa27.81■■■□□ 2.04
CAPN1-213ENST00000527897 ABCC8Q09428 1581 aa27.8■■■□□ 2.04
CAPN1-213ENST00000527897 IFT140Q96RY7 1462 aa27.74■■■□□ 2.03
CAPN1-213ENST00000527897 ZNF608Q9ULD9 1512 aaPredicted RBP27.69■■■□□ 2.02
CAPN1-213ENST00000527897 POLA1P09884 1462 aaPredicted RBP27.61■■■□□ 2.01
CAPN1-213ENST00000527897 EIF4G3O43432 1585 aaKnown RBP27.56■■■□□ 2
CAPN1-213ENST00000527897 TARBP1Q13395 1621 aaKnown RBP27.56■■■□□ 2
CAPN1-213ENST00000527897 CUX1P39880 1505 aa27.56■■■□□ 2
CAPN1-213ENST00000527897 RAD54L2Q9Y4B4 1467 aa27.54■■■□□ 2
CAPN1-213ENST00000527897 FGD5Q6ZNL6 1462 aa27.52■■■□□ 2
CAPN1-213ENST00000527897 SOGA1O94964 1423 aa27.51■■□□□ 1.99
CAPN1-213ENST00000527897 OSCARQ8IYS5 282 aa27.51■■□□□ 1.99
CAPN1-213ENST00000527897 AQRO60306 1485 aaKnown RBP eCLIP27.51■■□□□ 1.992e-6■■□□□ 13.9
CAPN1-213ENST00000527897 TDRD9Q8NDG6 1382 aaKnown RBP27.42■■□□□ 1.98
CAPN1-213ENST00000527897 FBLN2P98095 1184 aa27.33■■□□□ 1.97
CAPN1-213ENST00000527897 CHD1O14646 1710 aa27.3■■□□□ 1.96
CAPN1-213ENST00000527897 WRNQ14191 1432 aaPredicted RBP eCLIP27.28■■□□□ 1.96
CAPN1-213ENST00000527897 WDR97A6NE52 1622 aa27.27■■□□□ 1.96
CAPN1-213ENST00000527897 TRIM41Q8WV44 630 aa27.27■■□□□ 1.96
CAPN1-213ENST00000527897 SNAPC4Q5SXM2 1469 aa27.25■■□□□ 1.95
CAPN1-213ENST00000527897 SYNJ1O43426 1573 aa27.24■■□□□ 1.95
CAPN1-213ENST00000527897 TOP2BQ02880 1626 aa27.23■■□□□ 1.95
CAPN1-213ENST00000527897 BIVM-ERCC5R4GMW8 1640 aa27.23■■□□□ 1.95
CAPN1-213ENST00000527897 GRIN2BQ13224 1484 aa27.2■■□□□ 1.95
CAPN1-213ENST00000527897 ABCA10Q8WWZ4 1543 aa27.19■■□□□ 1.94
CAPN1-213ENST00000527897 GAPVD1Q14C86 1478 aa27.19■■□□□ 1.94
CAPN1-213ENST00000527897 PBRM1Q86U86 1689 aa27.17■■□□□ 1.94
CAPN1-213ENST00000527897 MAGI1Q96QZ7 1491 aaPredicted RBP27.14■■□□□ 1.94
CAPN1-213ENST00000527897 CHMP7Q8WUX9 453 aaPredicted RBP27.14■■□□□ 1.94
CAPN1-213ENST00000527897 ABCA5Q8WWZ7 1642 aa27.12■■□□□ 1.93
CAPN1-213ENST00000527897 RIMBP3CA6NJZ7 1639 aa27.11■■□□□ 1.93
CAPN1-213ENST00000527897 RIMBP3BA6NNM3 1639 aa27.11■■□□□ 1.93
CAPN1-213ENST00000527897 RIMBP3Q9UFD9 1639 aa27.11■■□□□ 1.93
CAPN1-213ENST00000527897 SYNJ2O15056 1496 aa27.06■■□□□ 1.92
CAPN1-213ENST00000527897 ARHGEF11O15085 1522 aa27.05■■□□□ 1.92
CAPN1-213ENST00000527897 CLASP1Q7Z460 1538 aa26.92■■□□□ 1.9
CAPN1-213ENST00000527897 ADAMTS12P58397 1594 aa26.91■■□□□ 1.9
CAPN1-213ENST00000527897 CYB5RLQ6IPT4 315 aa26.88■■□□□ 1.89
CAPN1-213ENST00000527897 ERICH3Q5RHP9 1530 aa26.86■■□□□ 1.89
CAPN1-213ENST00000527897 GRIN2AQ12879 1464 aa26.86■■□□□ 1.89
CAPN1-213ENST00000527897 FHAD1B1AJZ9 1412 aa26.83■■□□□ 1.89
CAPN1-213ENST00000527897 ARAP1Q96P48 1450 aa26.81■■□□□ 1.88
CAPN1-213ENST00000527897 CEP170Q5SW79 1584 aa26.75■■□□□ 1.87
CAPN1-213ENST00000527897 KIF27Q86VH2 1401 aa26.73■■□□□ 1.87
CAPN1-213ENST00000527897 NUP160Q12769 1436 aa26.71■■□□□ 1.87
CAPN1-213ENST00000527897 IGF1RP08069 1367 aa26.63■■□□□ 1.85
CAPN1-213ENST00000527897 CUL7Q14999 1698 aa26.6■■□□□ 1.85
CAPN1-213ENST00000527897 ERCC6L2Q5T890 1561 aa26.59■■□□□ 1.85
CAPN1-213ENST00000527897 SHROOM2Q13796 1616 aa26.54■■□□□ 1.84
CAPN1-213ENST00000527897 RUSC2Q8N2Y8 1516 aa26.51■■□□□ 1.83
CAPN1-213ENST00000527897 CARMIL1Q5VZK9 1371 aa26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms