RNA–Protein interactions for RNA: ENST00000527836.5

SCN3B-204, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

TSL 4

Gene SCN3B, Length 566 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-204ENST00000527836 NISCHQ9Y2I1 1504 aa30.52■■■□□ 2.48
SCN3B-204ENST00000527836 CCDC180Q9P1Z9 1646 aa27.33■■□□□ 1.97
SCN3B-204ENST00000527836 ABCC9O60706 1549 aa27.16■■□□□ 1.94
SCN3B-204ENST00000527836 RB1CC1Q8TDY2 1594 aa25.95■■□□□ 1.74
SCN3B-204ENST00000527836 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
SCN3B-204ENST00000527836 NACADO15069 1562 aa25.79■■□□□ 1.72
SCN3B-204ENST00000527836 MYO15BQ96JP2 1530 aa25.43■■□□□ 1.66
SCN3B-204ENST00000527836 UNC13AQ9UPW8 1703 aa25.34■■□□□ 1.65
SCN3B-204ENST00000527836 PABPN1Q86U42 306 aaKnown RBP eCLIP25.33■■□□□ 1.65
SCN3B-204ENST00000527836 ZCCHC6Q5VYS8 1495 aaKnown RBP25.31■■□□□ 1.64
SCN3B-204ENST00000527836 DNAJC5BQ9UF47 199 aa25.22■■□□□ 1.63
SCN3B-204ENST00000527836 DCAF1Q9Y4B6 1507 aa25.18■■□□□ 1.62
SCN3B-204ENST00000527836 BICRAQ9NZM4 1560 aa25.09■■□□□ 1.61
SCN3B-204ENST00000527836 SCRIBQ14160 1630 aa24.95■■□□□ 1.58
SCN3B-204ENST00000527836 SHROOM4Q9ULL8 1493 aa24.81■■□□□ 1.56
SCN3B-204ENST00000527836 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
SCN3B-204ENST00000527836 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
SCN3B-204ENST00000527836 CECR2Q9BXF3 1484 aa24.44■■□□□ 1.5
SCN3B-204ENST00000527836 SMARCA4P51532 1647 aa23.78■■□□□ 1.4
SCN3B-204ENST00000527836 NCAPD3P42695 1498 aa23.77■■□□□ 1.4
SCN3B-204ENST00000527836 ATAD2BQ9ULI0 1458 aa23.73■■□□□ 1.39
SCN3B-204ENST00000527836 SMARCA2P51531 1590 aa23.73■■□□□ 1.39
SCN3B-204ENST00000527836 BAZ1AQ9NRL2 1556 aaPredicted RBP23.71■■□□□ 1.39
SCN3B-204ENST00000527836 HMGXB3Q12766 1538 aa23.63■■□□□ 1.37
SCN3B-204ENST00000527836 BAZ1BQ9UIG0 1483 aaKnown RBP23.58■■□□□ 1.37
SCN3B-204ENST00000527836 MROH2BQ7Z745 1585 aa23.51■■□□□ 1.35
SCN3B-204ENST00000527836 ERCC6Q03468 1493 aa23.5■■□□□ 1.35
SCN3B-204ENST00000527836 PEG3Q9GZU2 1588 aa23.5■■□□□ 1.35
SCN3B-204ENST00000527836 NESP48681 1621 aa23.36■■□□□ 1.33
SCN3B-204ENST00000527836 CUX2O14529 1486 aa23.31■■□□□ 1.32
SCN3B-204ENST00000527836 WIZO95785 1651 aa23.28■■□□□ 1.32
SCN3B-204ENST00000527836 LAMC3Q9Y6N6 1575 aa23.25■■□□□ 1.31
SCN3B-204ENST00000527836 PDS5BQ9NTI5 1447 aa23.14■■□□□ 1.29
SCN3B-204ENST00000527836 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
SCN3B-204ENST00000527836 RSF1Q96T23 1441 aaPredicted RBP23.09■■□□□ 1.29
SCN3B-204ENST00000527836 CADPSQ9ULU8 1353 aa23.09■■□□□ 1.29
SCN3B-204ENST00000527836 DNAJC5Q9H3Z4 198 aa23.07■■□□□ 1.28
SCN3B-204ENST00000527836 THOC2Q8NI27 1593 aaKnown RBP23.06■■□□□ 1.28
SCN3B-204ENST00000527836 TOP2AP11388 1531 aaKnown RBP22.98■■□□□ 1.27
SCN3B-204ENST00000527836 MRC2Q9UBG0 1479 aa22.9■■□□□ 1.26
SCN3B-204ENST00000527836 CEP164Q9UPV0 1460 aa22.87■■□□□ 1.25
SCN3B-204ENST00000527836 CFTRP13569 1480 aa22.84■■□□□ 1.25
SCN3B-204ENST00000527836 FANCD2Q9BXW9 1451 aa22.84■■□□□ 1.25
SCN3B-204ENST00000527836 WDR62O43379 1518 aa22.8■■□□□ 1.24
SCN3B-204ENST00000527836 CCDC88BA6NC98 1476 aa22.72■■□□□ 1.23
SCN3B-204ENST00000527836 PRDM2Q13029 1718 aa22.71■■□□□ 1.23
SCN3B-204ENST00000527836 URB2Q14146 1524 aaKnown RBP22.6■■□□□ 1.21
SCN3B-204ENST00000527836 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
SCN3B-204ENST00000527836 TOPBP1Q92547 1522 aa22.41■■□□□ 1.18
SCN3B-204ENST00000527836 IFT140Q96RY7 1462 aa22.39■■□□□ 1.17
SCN3B-204ENST00000527836 SUPT5HO00267 1087 aaKnown RBP22.36■■□□□ 1.17
SCN3B-204ENST00000527836 DNMBPQ6XZF7 1577 aa22.36■■□□□ 1.17
SCN3B-204ENST00000527836 OSCARQ8IYS5 282 aa22.34■■□□□ 1.17
SCN3B-204ENST00000527836 ZNF608Q9ULD9 1512 aaPredicted RBP22.29■■□□□ 1.16
SCN3B-204ENST00000527836 TRIM41Q8WV44 630 aa22.25■■□□□ 1.15
SCN3B-204ENST00000527836 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
SCN3B-204ENST00000527836 POLA1P09884 1462 aaPredicted RBP22.19■■□□□ 1.14
SCN3B-204ENST00000527836 TARBP1Q13395 1621 aaKnown RBP22.17■■□□□ 1.14
SCN3B-204ENST00000527836 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.14
SCN3B-204ENST00000527836 SOGA1O94964 1423 aa22.14■■□□□ 1.13
SCN3B-204ENST00000527836 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
SCN3B-204ENST00000527836 FGD5Q6ZNL6 1462 aa22.1■■□□□ 1.13
SCN3B-204ENST00000527836 CUX1P39880 1505 aa22.08■■□□□ 1.13
SCN3B-204ENST00000527836 FBLN2P98095 1184 aa22.08■■□□□ 1.13
SCN3B-204ENST00000527836 TDRD9Q8NDG6 1382 aaKnown RBP22.06■■□□□ 1.12
SCN3B-204ENST00000527836 CHD1O14646 1710 aa22.05■■□□□ 1.12
SCN3B-204ENST00000527836 WDR97A6NE52 1622 aa21.99■■□□□ 1.11
SCN3B-204ENST00000527836 RIMBP3CA6NJZ7 1639 aa21.98■■□□□ 1.11
SCN3B-204ENST00000527836 RIMBP3BA6NNM3 1639 aa21.98■■□□□ 1.11
SCN3B-204ENST00000527836 RIMBP3Q9UFD9 1639 aa21.98■■□□□ 1.11
SCN3B-204ENST00000527836 SNAPC4Q5SXM2 1469 aa21.94■■□□□ 1.1
SCN3B-204ENST00000527836 CHMP7Q8WUX9 453 aaPredicted RBP21.92■■□□□ 1.1
SCN3B-204ENST00000527836 ARHGEF11O15085 1522 aa21.91■■□□□ 1.1
SCN3B-204ENST00000527836 GRIN2BQ13224 1484 aa21.91■■□□□ 1.1
SCN3B-204ENST00000527836 MAGI1Q96QZ7 1491 aaPredicted RBP21.89■■□□□ 1.09
SCN3B-204ENST00000527836 GAPVD1Q14C86 1478 aa21.87■■□□□ 1.09
SCN3B-204ENST00000527836 PBRM1Q86U86 1689 aa21.86■■□□□ 1.09
SCN3B-204ENST00000527836 WRNQ14191 1432 aaPredicted RBP eCLIP21.84■■□□□ 1.09
SCN3B-204ENST00000527836 ABCA10Q8WWZ4 1543 aa21.84■■□□□ 1.09
SCN3B-204ENST00000527836 CYB5RLQ6IPT4 315 aa21.82■■□□□ 1.08
SCN3B-204ENST00000527836 SYNJ2O15056 1496 aa21.81■■□□□ 1.08
SCN3B-204ENST00000527836 SYNJ1O43426 1573 aa21.81■■□□□ 1.08
SCN3B-204ENST00000527836 TOP2BQ02880 1626 aa21.8■■□□□ 1.08
SCN3B-204ENST00000527836 BIVM-ERCC5R4GMW8 1640 aa21.8■■□□□ 1.08
SCN3B-204ENST00000527836 ABCA5Q8WWZ7 1642 aa21.79■■□□□ 1.08
SCN3B-204ENST00000527836 CLASP1Q7Z460 1538 aa21.72■■□□□ 1.07
SCN3B-204ENST00000527836 ARAP1Q96P48 1450 aa21.7■■□□□ 1.06
SCN3B-204ENST00000527836 ADAMTS12P58397 1594 aa21.62■■□□□ 1.05
SCN3B-204ENST00000527836 GRIN2AQ12879 1464 aa21.62■■□□□ 1.05
SCN3B-204ENST00000527836 FHAD1B1AJZ9 1412 aa21.59■■□□□ 1.05
SCN3B-204ENST00000527836 ERICH3Q5RHP9 1530 aa21.59■■□□□ 1.05
SCN3B-204ENST00000527836 TRHP20396 242 aaPredicted RBP21.58■■□□□ 1.05
SCN3B-204ENST00000527836 CEP170Q5SW79 1584 aa21.52■■□□□ 1.04
SCN3B-204ENST00000527836 NUP160Q12769 1436 aa21.5■■□□□ 1.03
SCN3B-204ENST00000527836 KIF27Q86VH2 1401 aa21.44■■□□□ 1.02
SCN3B-204ENST00000527836 ERCC6L2Q5T890 1561 aa21.4■■□□□ 1.02
SCN3B-204ENST00000527836 SHROOM2Q13796 1616 aa21.39■■□□□ 1.01
SCN3B-204ENST00000527836 CUL7Q14999 1698 aa21.35■■□□□ 1.01
SCN3B-204ENST00000527836 JPH4Q96JJ6 628 aa21.35■■□□□ 1.01
SCN3B-204ENST00000527836 PRG4Q92954 1404 aaPredicted RBP21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms