RNA–Protein interactions for RNA: ENST00000527698.1

LRRK1-206, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 2

Gene LRRK1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-206ENST00000527698 NISCHQ9Y2I1 1504 aa55.62■■■■■ 6.49
LRRK1-206ENST00000527698 CCDC180Q9P1Z9 1646 aa49.4■■■■■ 5.5
LRRK1-206ENST00000527698 ABCC9O60706 1549 aa49.33■■■■■ 5.49
LRRK1-206ENST00000527698 RB1CC1Q8TDY2 1594 aa47.01■■■■■ 5.12
LRRK1-206ENST00000527698 NACADO15069 1562 aa46.65■■■■■ 5.06
LRRK1-206ENST00000527698 DNAJC5BQ9UF47 199 aa46.39■■■■■ 5.02
LRRK1-206ENST00000527698 ZCCHC6Q5VYS8 1495 aaKnown RBP46.38■■■■■ 5.02
LRRK1-206ENST00000527698 DCAF8L2P0C7V8 631 aa46.28■■■■■ 5
LRRK1-206ENST00000527698 MYO15BQ96JP2 1530 aa46.26■■■■■ 5
LRRK1-206ENST00000527698 DCAF1Q9Y4B6 1507 aa46.16■■■■■ 4.98
LRRK1-206ENST00000527698 UNC13AQ9UPW8 1703 aa45.97■■■■■ 4.95
LRRK1-206ENST00000527698 PABPN1Q86U42 306 aaKnown RBP eCLIP45.83■■■■■ 4.93
LRRK1-206ENST00000527698 BICRAQ9NZM4 1560 aa45.62■■■■■ 4.89
LRRK1-206ENST00000527698 SHROOM4Q9ULL8 1493 aa45.1■■■■■ 4.81
LRRK1-206ENST00000527698 SCRIBQ14160 1630 aa44.91■■■■■ 4.78
LRRK1-206ENST00000527698 CC2D2AQ9P2K1 1620 aa44.64■■■■■ 4.74
LRRK1-206ENST00000527698 EIF4G1Q04637 1599 aaKnown RBP44.51■■■■■ 4.72
LRRK1-206ENST00000527698 CECR2Q9BXF3 1484 aa44.5■■■■■ 4.71
LRRK1-206ENST00000527698 BAZ1AQ9NRL2 1556 aaPredicted RBP43.15■■■■■ 4.5
LRRK1-206ENST00000527698 SMARCA4P51532 1647 aa43.08■■■■■ 4.49
LRRK1-206ENST00000527698 NCAPD3P42695 1498 aa43.05■■■■■ 4.48
LRRK1-206ENST00000527698 ATAD2BQ9ULI0 1458 aa42.85■■■■■ 4.45
LRRK1-206ENST00000527698 SMARCA2P51531 1590 aa42.82■■■■■ 4.44
LRRK1-206ENST00000527698 DNAJC5Q9H3Z4 198 aa42.81■■■■■ 4.44
LRRK1-206ENST00000527698 MROH2BQ7Z745 1585 aa42.78■■■■■ 4.44
LRRK1-206ENST00000527698 HMGXB3Q12766 1538 aa42.75■■■■■ 4.43
LRRK1-206ENST00000527698 PEG3Q9GZU2 1588 aa42.73■■■■■ 4.43
LRRK1-206ENST00000527698 CUX2O14529 1486 aa42.71■■■■■ 4.43
LRRK1-206ENST00000527698 ERCC6Q03468 1493 aa42.63■■■■■ 4.42
LRRK1-206ENST00000527698 RSF1Q96T23 1441 aaPredicted RBP42.46■■■■■ 4.39
LRRK1-206ENST00000527698 BAZ1BQ9UIG0 1483 aaKnown RBP42.44■■■■■ 4.38
LRRK1-206ENST00000527698 WIZO95785 1651 aa42.36■■■■■ 4.37
LRRK1-206ENST00000527698 NESP48681 1621 aa42.33■■■■■ 4.37
LRRK1-206ENST00000527698 LAMC3Q9Y6N6 1575 aa42.14■■■■■ 4.34
LRRK1-206ENST00000527698 THOC2Q8NI27 1593 aaKnown RBP42.04■■■■■ 4.32
LRRK1-206ENST00000527698 TOP2AP11388 1531 aaKnown RBP42■■■■■ 4.31
LRRK1-206ENST00000527698 KIF21AQ7Z4S6 1674 aa41.87■■■■■ 4.29
LRRK1-206ENST00000527698 PDS5BQ9NTI5 1447 aa41.85■■■■■ 4.29
LRRK1-206ENST00000527698 CADPSQ9ULU8 1353 aa41.69■■■■■ 4.26
LRRK1-206ENST00000527698 SUPT5HO00267 1087 aaKnown RBP41.6■■■■■ 4.25
LRRK1-206ENST00000527698 MRC2Q9UBG0 1479 aa41.49■■■■■ 4.23
LRRK1-206ENST00000527698 CCDC88BA6NC98 1476 aa41.47■■■■■ 4.23
LRRK1-206ENST00000527698 WDR62O43379 1518 aa41.43■■■■■ 4.22
LRRK1-206ENST00000527698 CFTRP13569 1480 aa41.32■■■■■ 4.2
LRRK1-206ENST00000527698 CEP164Q9UPV0 1460 aa41.28■■■■■ 4.2
LRRK1-206ENST00000527698 FANCD2Q9BXW9 1451 aa41.21■■■■■ 4.19
LRRK1-206ENST00000527698 PRDM2Q13029 1718 aa41.12■■■■■ 4.17
LRRK1-206ENST00000527698 URB2Q14146 1524 aaKnown RBP40.88■■■■■ 4.13
LRRK1-206ENST00000527698 TRIM41Q8WV44 630 aa40.74■■■■■ 4.11
LRRK1-206ENST00000527698 OSCARQ8IYS5 282 aa40.65■■■■■ 4.1
LRRK1-206ENST00000527698 ABCC8Q09428 1581 aa40.56■■■■■ 4.08
LRRK1-206ENST00000527698 IFT140Q96RY7 1462 aa40.48■■■■■ 4.07
LRRK1-206ENST00000527698 TOPBP1Q92547 1522 aa40.42■■■■■ 4.06
LRRK1-206ENST00000527698 DNMBPQ6XZF7 1577 aa40.38■■■■■ 4.05
LRRK1-206ENST00000527698 ZNF608Q9ULD9 1512 aaPredicted RBP40.37■■■■■ 4.05
LRRK1-206ENST00000527698 EIF4G3O43432 1585 aaKnown RBP40.21■■■■■ 4.03
LRRK1-206ENST00000527698 RIMBP3CA6NJZ7 1639 aa40.18■■■■■ 4.02
LRRK1-206ENST00000527698 RIMBP3BA6NNM3 1639 aa40.18■■■■■ 4.02
LRRK1-206ENST00000527698 RIMBP3Q9UFD9 1639 aa40.18■■■■■ 4.02
LRRK1-206ENST00000527698 CUX1P39880 1505 aa40.14■■■■■ 4.02
LRRK1-206ENST00000527698 TARBP1Q13395 1621 aaKnown RBP40.11■■■■■ 4.01
LRRK1-206ENST00000527698 WRNQ14191 1432 aaPredicted RBP eCLIP40.08■■■■■ 4.01
LRRK1-206ENST00000527698 ARHGEF11O15085 1522 aa40.03■■■■■ 4
LRRK1-206ENST00000527698 POLA1P09884 1462 aaPredicted RBP40.01■■■■■ 4
LRRK1-206ENST00000527698 TOP2BQ02880 1626 aa39.98■■■■□ 3.99
LRRK1-206ENST00000527698 AQRO60306 1485 aaKnown RBP eCLIP39.97■■■■□ 3.99
LRRK1-206ENST00000527698 BIVM-ERCC5R4GMW8 1640 aa39.97■■■■□ 3.99
LRRK1-206ENST00000527698 FGD5Q6ZNL6 1462 aa39.96■■■■□ 3.99
LRRK1-206ENST00000527698 CHD1O14646 1710 aa39.95■■■■□ 3.99
LRRK1-206ENST00000527698 SOGA1O94964 1423 aa39.91■■■■□ 3.98
LRRK1-206ENST00000527698 SYNJ1O43426 1573 aa39.87■■■■□ 3.97
LRRK1-206ENST00000527698 RAD54L2Q9Y4B4 1467 aa39.79■■■■□ 3.96
LRRK1-206ENST00000527698 WDR97A6NE52 1622 aa39.79■■■■□ 3.96
LRRK1-206ENST00000527698 FBLN2P98095 1184 aa39.68■■■■□ 3.94
LRRK1-206ENST00000527698 TDRD9Q8NDG6 1382 aaKnown RBP39.68■■■■□ 3.94
LRRK1-206ENST00000527698 ABCA10Q8WWZ4 1543 aa39.66■■■■□ 3.94
LRRK1-206ENST00000527698 CYB5RLQ6IPT4 315 aa39.64■■■■□ 3.94
LRRK1-206ENST00000527698 ARAP1Q96P48 1450 aa39.6■■■■□ 3.93
LRRK1-206ENST00000527698 SNAPC4Q5SXM2 1469 aa39.59■■■■□ 3.93
LRRK1-206ENST00000527698 MAGI1Q96QZ7 1491 aaPredicted RBP39.55■■■■□ 3.92
LRRK1-206ENST00000527698 CLASP1Q7Z460 1538 aa39.5■■■■□ 3.91
LRRK1-206ENST00000527698 GRIN2BQ13224 1484 aa39.49■■■■□ 3.91
LRRK1-206ENST00000527698 GAPVD1Q14C86 1478 aa39.46■■■■□ 3.91
LRRK1-206ENST00000527698 ABCA5Q8WWZ7 1642 aa39.43■■■■□ 3.9
LRRK1-206ENST00000527698 CHMP7Q8WUX9 453 aaPredicted RBP39.42■■■■□ 3.9
LRRK1-206ENST00000527698 SYNJ2O15056 1496 aa39.4■■■■□ 3.9
LRRK1-206ENST00000527698 PBRM1Q86U86 1689 aa39.37■■■■□ 3.89
LRRK1-206ENST00000527698 KIF27Q86VH2 1401 aa39.27■■■■□ 3.88
LRRK1-206ENST00000527698 TRHP20396 242 aaPredicted RBP39.25■■■■□ 3.87
LRRK1-206ENST00000527698 ERICH3Q5RHP9 1530 aa39.24■■■■□ 3.87
LRRK1-206ENST00000527698 CHIC1Q5VXU3 224 aa39.07■■■■□ 3.85
LRRK1-206ENST00000527698 FHAD1B1AJZ9 1412 aa39.04■■■■□ 3.84
LRRK1-206ENST00000527698 ADAMTS12P58397 1594 aa39.02■■■■□ 3.84
LRRK1-206ENST00000527698 IGF1RP08069 1367 aa39■■■■□ 3.83
LRRK1-206ENST00000527698 GRIN2AQ12879 1464 aa38.98■■■■□ 3.83
LRRK1-206ENST00000527698 CUL7Q14999 1698 aa38.97■■■■□ 3.83
LRRK1-206ENST00000527698 NUP160Q12769 1436 aa38.88■■■■□ 3.81
LRRK1-206ENST00000527698 CEP170Q5SW79 1584 aa38.85■■■■□ 3.81
LRRK1-206ENST00000527698 EEA1Q15075 1411 aa38.82■■■■□ 3.81
LRRK1-206ENST00000527698 CARMIL1Q5VZK9 1371 aa38.81■■■■□ 3.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms